HEADER OXYGEN STORAGE/TRANSPORT 15-FEB-01 1I3D TITLE HUMAN CARBONMONOXY HEMOGLOBIN BART'S (GAMMA4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN GAMMA CHAINS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HBG1; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: GSY112; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRMAE389 KEYWDS OXYGEN TRANSPORT, OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.D.KIDD,H.M.BAKER,A.J.MATHEWS,T.BRITTAIN,E.N.BAKER REVDAT 5 09-AUG-23 1I3D 1 REMARK REVDAT 4 04-OCT-17 1I3D 1 REMARK REVDAT 3 24-FEB-09 1I3D 1 VERSN REVDAT 2 01-APR-03 1I3D 1 JRNL REVDAT 1 12-SEP-01 1I3D 0 JRNL AUTH R.D.KIDD,H.M.BAKER,A.J.MATHEWS,T.BRITTAIN,E.N.BAKER JRNL TITL OLIGOMERIZATION AND LIGAND BINDING IN A HOMOTETRAMERIC JRNL TITL 2 HEMOGLOBIN: TWO HIGH-RESOLUTION CRYSTAL STRUCTURES OF JRNL TITL 3 HEMOGLOBIN BART'S (GAMMA(4)), A MARKER FOR JRNL TITL 4 ALPHA-THALASSEMIA. JRNL REF PROTEIN SCI. V. 10 1739 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11514664 JRNL DOI 10.1110/PS.11701 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 26914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2686 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4101 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 445 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 32.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : HEM_XPLOR_PAR REMARK 3 PARAMETER FILE 3 : CMO_XPLOR_PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : HEM_XPLOR_TOP REMARK 3 TOPOLOGY FILE 3 : CMO_XPLOR_TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : CYCLINDRICALLY BENT TRIANGULAR REMARK 200 SI(111) ASYMMETRIC CUT, REMARK 200 HORIZONTAL FOCUS REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1CBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETIC ACID/KOH, MEPEG 5000, PH 4.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.30800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.41850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.30800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.41850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND GLOBIN DIMER OF THE HOMOTETRAMER IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X, -Y+1, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.83700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 1 O REMARK 480 LYS A 82 CD CE NZ REMARK 480 LYS A 95 CD CE NZ REMARK 480 LYS B 82 CE NZ REMARK 480 LYS B 104 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 101 O HOH A 397 1.49 REMARK 500 NZ LYS B 61 O HOH B 346 1.57 REMARK 500 NE2 GLN B 87 O HOH B 341 1.82 REMARK 500 NH2 ARG A 40 O HOH A 376 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 40 O HOH B 298 2565 1.43 REMARK 500 O HOH B 468 O HOH B 468 2665 1.76 REMARK 500 NH1 ARG A 40 O HOH B 291 2565 1.95 REMARK 500 NE ARG A 40 O HOH B 298 2565 1.98 REMARK 500 CE1 HIS B 117 O HOH B 368 2665 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 1 N GLY A 1 CA 0.168 REMARK 500 GLY A 1 C HIS A 2 N 0.235 REMARK 500 HIS A 2 CG HIS A 2 CD2 0.175 REMARK 500 GLU A 5 CD GLU A 5 OE1 0.146 REMARK 500 GLU A 6 CG GLU A 6 CD 0.198 REMARK 500 GLU A 6 CD GLU A 6 OE1 0.180 REMARK 500 GLU A 6 CD GLU A 6 OE2 -0.160 REMARK 500 VAL A 20 CB VAL A 20 CG1 -0.187 REMARK 500 GLU A 21 CD GLU A 21 OE2 0.165 REMARK 500 GLU A 26 CD GLU A 26 OE1 0.113 REMARK 500 TRP A 37 NE1 TRP A 37 CE2 -0.083 REMARK 500 ARG A 40 CD ARG A 40 NE 0.341 REMARK 500 ARG A 40 NE ARG A 40 CZ -0.183 REMARK 500 ARG A 40 CZ ARG A 40 NH1 -0.079 REMARK 500 ARG A 40 CZ ARG A 40 NH2 0.180 REMARK 500 PHE A 41 CE1 PHE A 41 CZ 0.143 REMARK 500 ASP A 43 CB ASP A 43 CG -0.132 REMARK 500 ASP A 43 CG ASP A 43 OD2 0.182 REMARK 500 PHE A 45 CD1 PHE A 45 CE1 0.123 REMARK 500 GLY A 72 N GLY A 72 CA 0.092 REMARK 500 LEU A 78 CA LEU A 78 C -0.172 REMARK 500 ASP A 79 CA ASP A 79 CB 0.345 REMARK 500 ASP A 80 CB ASP A 80 CG 0.240 REMARK 500 ASP A 80 C ASP A 80 O 0.129 REMARK 500 GLN A 87 CG GLN A 87 CD 0.143 REMARK 500 GLN A 87 CD GLN A 87 NE2 0.171 REMARK 500 GLU A 90 CD GLU A 90 OE2 0.128 REMARK 500 ASP A 94 N ASP A 94 CA 0.131 REMARK 500 HIS A 97 CG HIS A 97 CD2 0.098 REMARK 500 GLU A 101 CG GLU A 101 CD -0.115 REMARK 500 GLU A 101 CD GLU A 101 OE1 0.277 REMARK 500 HIS A 117 CB HIS A 117 CG 0.128 REMARK 500 HIS A 117 CG HIS A 117 CD2 -0.228 REMARK 500 TRP A 130 CZ3 TRP A 130 CH2 0.102 REMARK 500 SER A 143 CA SER A 143 CB 0.106 REMARK 500 ARG A 144 CG ARG A 144 CD 0.152 REMARK 500 ARG A 144 CZ ARG A 144 NH1 -0.096 REMARK 500 ARG A 144 CZ ARG A 144 NH2 0.231 REMARK 500 TYR A 145 CA TYR A 145 CB -0.135 REMARK 500 TYR A 145 CB TYR A 145 CG 0.098 REMARK 500 HIS A 146 CB HIS A 146 CG -0.116 REMARK 500 HIS A 146 CE1 HIS A 146 NE2 0.158 REMARK 500 HIS A 146 NE2 HIS A 146 CD2 -0.101 REMARK 500 HIS B 2 N HIS B 2 CA -0.185 REMARK 500 HIS B 2 CB HIS B 2 CG -0.118 REMARK 500 HIS B 2 CG HIS B 2 CD2 0.158 REMARK 500 GLU B 5 CD GLU B 5 OE1 0.069 REMARK 500 LYS B 17 C VAL B 18 N 0.151 REMARK 500 ASN B 19 CB ASN B 19 CG 0.165 REMARK 500 ASN B 19 CG ASN B 19 OD1 0.169 REMARK 500 REMARK 500 THIS ENTRY HAS 97 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 1 CA - C - O ANGL. DEV. = 11.7 DEGREES REMARK 500 GLY A 1 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 GLU A 5 OE1 - CD - OE2 ANGL. DEV. = -8.9 DEGREES REMARK 500 GLU A 26 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 43 CB - CG - OD1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 79 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 80 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 99 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 GLU A 101 OE1 - CD - OE2 ANGL. DEV. = -13.2 DEGREES REMARK 500 HIS A 117 ND1 - CG - CD2 ANGL. DEV. = 13.2 DEGREES REMARK 500 HIS A 117 CB - CG - ND1 ANGL. DEV. = -8.3 DEGREES REMARK 500 HIS A 117 CG - ND1 - CE1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 HIS A 146 CG - ND1 - CE1 ANGL. DEV. = 6.7 DEGREES REMARK 500 HIS A 146 ND1 - CE1 - NE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 HIS A 146 CA - C - O ANGL. DEV. = 17.0 DEGREES REMARK 500 GLU B 5 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 TRP B 15 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 VAL B 20 CG1 - CB - CG2 ANGL. DEV. = 23.4 DEGREES REMARK 500 GLU B 21 CA - C - O ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP B 22 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 22 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG B 40 NH1 - CZ - NH2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 PHE B 42 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP B 43 OD1 - CG - OD2 ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP B 43 CB - CG - OD1 ANGL. DEV. = 14.2 DEGREES REMARK 500 PHE B 45 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE B 45 CZ - CE2 - CD2 ANGL. DEV. = 13.9 DEGREES REMARK 500 PHE B 85 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE B 85 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 94 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 HIS B 97 CG - ND1 - CE1 ANGL. DEV. = 7.5 DEGREES REMARK 500 HIS B 97 ND1 - CE1 - NE2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 99 OD1 - CG - OD2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ASP B 99 CB - CG - OD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLU B 101 OE1 - CD - OE2 ANGL. DEV. = -18.5 DEGREES REMARK 500 HIS B 146 CA - C - O ANGL. DEV. = -26.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 2 124.65 -172.21 REMARK 500 ASP A 80 55.23 -147.52 REMARK 500 HIS B 2 119.17 -166.07 REMARK 500 VAL B 20 39.74 -84.77 REMARK 500 ASP B 80 55.52 -147.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 1 -15.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 92 NE2 REMARK 620 2 HEM A 147 NA 84.5 REMARK 620 3 HEM A 147 NB 87.6 91.4 REMARK 620 4 HEM A 147 NC 96.3 178.9 87.9 REMARK 620 5 HEM A 147 ND 94.2 90.8 177.3 89.9 REMARK 620 6 CMO A 148 C 174.6 99.4 88.6 79.7 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 147 NA 88.2 REMARK 620 3 HEM B 147 NB 89.6 90.5 REMARK 620 4 HEM B 147 NC 94.8 177.0 89.1 REMARK 620 5 HEM B 147 ND 92.2 90.7 177.9 89.6 REMARK 620 6 CMO B 148 C 172.8 98.5 87.8 78.5 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO B 148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I3E RELATED DB: PDB REMARK 900 HUMAN AZIDO-MET HEMOGLOBIN BART'S (GAMMA4)' DBREF 1I3D A 1 146 UNP P69891 HBG1_HUMAN 1 146 DBREF 1I3D B 1 146 UNP P69891 HBG1_HUMAN 1 146 SEQRES 1 A 146 GLY HIS PHE THR GLU GLU ASP LYS ALA THR ILE THR SER SEQRES 2 A 146 LEU TRP GLY LYS VAL ASN VAL GLU ASP ALA GLY GLY GLU SEQRES 3 A 146 THR LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 A 146 ARG PHE PHE ASP SER PHE GLY ASN LEU SER SER ALA SER SEQRES 5 A 146 ALA ILE MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 A 146 LYS VAL LEU THR SER LEU GLY ASP ALA ILE LYS HIS LEU SEQRES 7 A 146 ASP ASP LEU LYS GLY THR PHE ALA GLN LEU SER GLU LEU SEQRES 8 A 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS SEQRES 9 A 146 LEU LEU GLY ASN VAL LEU VAL THR VAL LEU ALA ILE HIS SEQRES 10 A 146 PHE GLY LYS GLU PHE THR PRO GLU VAL GLN ALA SER TRP SEQRES 11 A 146 GLN LYS MET VAL THR ALA VAL ALA SER ALA LEU SER SER SEQRES 12 A 146 ARG TYR HIS SEQRES 1 B 146 GLY HIS PHE THR GLU GLU ASP LYS ALA THR ILE THR SER SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL GLU ASP ALA GLY GLY GLU SEQRES 3 B 146 THR LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE ASP SER PHE GLY ASN LEU SER SER ALA SER SEQRES 5 B 146 ALA ILE MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU THR SER LEU GLY ASP ALA ILE LYS HIS LEU SEQRES 7 B 146 ASP ASP LEU LYS GLY THR PHE ALA GLN LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL THR VAL LEU ALA ILE HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO GLU VAL GLN ALA SER TRP SEQRES 11 B 146 GLN LYS MET VAL THR ALA VAL ALA SER ALA LEU SER SER SEQRES 12 B 146 ARG TYR HIS HET HEM A 147 43 HET CMO A 148 2 HET HEM B 147 43 HET CMO B 148 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CMO 2(C O) FORMUL 7 HOH *286(H2 O) HELIX 1 1 THR A 4 VAL A 18 1 15 HELIX 2 2 ASN A 19 VAL A 34 1 16 HELIX 3 3 TYR A 35 PHE A 41 5 7 HELIX 4 5 SER A 50 GLY A 56 1 7 HELIX 5 6 ASN A 57 LYS A 76 1 20 HELIX 6 7 PHE A 85 CYS A 93 5 9 HELIX 7 10 ASP A 99 HIS A 117 1 19 HELIX 8 12 THR A 123 SER A 143 1 21 HELIX 9 14 THR B 4 VAL B 18 1 15 HELIX 10 15 ASN B 19 VAL B 34 1 16 HELIX 11 16 TYR B 35 PHE B 41 5 7 HELIX 12 17 SER B 50 GLY B 56 1 7 HELIX 13 18 ASN B 57 LYS B 76 1 20 HELIX 14 21 PHE B 85 CYS B 93 1 9 HELIX 15 22 ASP B 99 HIS B 117 1 19 HELIX 16 24 THR B 123 SER B 143 1 21 LINK NE2 HIS A 92 FE HEM A 147 1555 1555 2.12 LINK FE HEM A 147 C CMO A 148 1555 1555 2.25 LINK NE2 HIS B 92 FE HEM B 147 1555 1555 2.09 LINK FE HEM B 147 C CMO B 148 1555 1555 2.26 SITE 1 AC1 18 PHE A 41 PHE A 42 HIS A 63 LYS A 66 SITE 2 AC1 18 SER A 70 LEU A 88 HIS A 92 LEU A 96 SITE 3 AC1 18 VAL A 98 ASN A 102 PHE A 103 LEU A 106 SITE 4 AC1 18 LEU A 141 CMO A 148 HOH A 347 HOH A 441 SITE 5 AC1 18 HOH A 472 SER B 50 SITE 1 AC2 3 HIS A 63 VAL A 67 HEM A 147 SITE 1 AC3 18 SER A 50 SER A 52 HOH A 332 PHE B 41 SITE 2 AC3 18 PHE B 42 PHE B 45 HIS B 63 VAL B 67 SITE 3 AC3 18 SER B 70 LEU B 91 HIS B 92 LEU B 96 SITE 4 AC3 18 VAL B 98 ASN B 102 LEU B 106 LEU B 141 SITE 5 AC3 18 CMO B 148 HOH B 390 SITE 1 AC4 3 HIS B 63 VAL B 67 HEM B 147 CRYST1 60.616 82.837 53.576 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018665 0.00000