data_1I3W # _entry.id 1I3W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I3W pdb_00001i3w 10.2210/pdb1i3w/pdb NDB DD0039 ? ? RCSB RCSB012871 ? ? WWPDB D_1000012871 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-21 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2019-07-24 7 'Structure model' 2 0 2023-11-15 8 'Structure model' 3 0 2024-07-10 9 'Structure model' 3 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Refinement description' 14 7 'Structure model' 'Atomic model' 15 7 'Structure model' 'Data collection' 16 7 'Structure model' 'Database references' 17 7 'Structure model' 'Derived calculations' 18 8 'Structure model' 'Data collection' 19 8 'Structure model' 'Derived calculations' 20 8 'Structure model' 'Non-polymer description' 21 8 'Structure model' 'Structure summary' 22 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_validate_polymer_linkage 2 6 'Structure model' software 3 6 'Structure model' struct_conn 4 6 'Structure model' struct_ref_seq 5 7 'Structure model' atom_site 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' database_2 9 7 'Structure model' struct_conn 10 8 'Structure model' chem_comp 11 8 'Structure model' chem_comp_atom 12 8 'Structure model' chem_comp_bond 13 8 'Structure model' entity 14 8 'Structure model' struct_conn 15 9 'Structure model' pdbx_entry_details 16 9 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.name' 2 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 3 6 'Structure model' '_struct_ref_seq.db_align_beg' 4 6 'Structure model' '_struct_ref_seq.db_align_end' 5 7 'Structure model' '_atom_site.auth_atom_id' 6 7 'Structure model' '_atom_site.label_atom_id' 7 7 'Structure model' '_database_2.pdbx_DOI' 8 7 'Structure model' '_database_2.pdbx_database_accession' 9 7 'Structure model' '_struct_conn.pdbx_dist_value' 10 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 8 'Structure model' '_chem_comp.formula' 18 8 'Structure model' '_chem_comp.formula_weight' 19 8 'Structure model' '_entity.formula_weight' 20 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 9 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I3W _pdbx_database_status.recvd_initial_deposition_date 2001-02-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robinson, H.' 1 'Gao, Y.-G.' 2 'Yang, X.-L.' 3 'Sanishvili, R.' 4 'Joachimiak, A.' 5 'Wang, A.H.-J.' 6 # _citation.id primary _citation.title 'Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg.' _citation.journal_abbrev Biochemistry _citation.journal_volume 40 _citation.page_first 5587 _citation.page_last ? _citation.year 2001 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11341823 _citation.pdbx_database_id_DOI 10.1021/BI002859Z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robinson, H.' 1 ? primary 'Gao, Y.G.' 2 ? primary 'Yang, X.' 3 ? primary 'Sanishvili, R.' 4 ? primary 'Joachimiak, A.' 5 ? primary 'Wang, A.H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3'" 3109.874 4 ? ? ? ? 2 polymer nat 'ACTINOMYCIN D' 1291.446 4 ? ? ? ? 3 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name DACTINOMYCIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DA)(DT)(DC)(DG)(DA)(BRU)(DC)(DG)' CGATCGAUCG A,B,C,D ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV E,F,G,H ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 BRU n 1 9 DC n 1 10 DG n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1890 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 ? ? ? A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 BRU 8 8 8 BRU BRU A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DG 2 12 12 DG DG B . n B 1 3 DA 3 13 13 DA DA B . n B 1 4 DT 4 14 14 DT DT B . n B 1 5 DC 5 15 15 DC DC B . n B 1 6 DG 6 16 16 DG DG B . n B 1 7 DA 7 17 17 DA DA B . n B 1 8 BRU 8 18 18 BRU BRU B . n B 1 9 DC 9 19 19 DC DC B . n B 1 10 DG 10 20 20 DG DG B . n C 1 1 DC 1 21 ? ? ? C . n C 1 2 DG 2 22 22 DG DG C . n C 1 3 DA 3 23 23 DA DA C . n C 1 4 DT 4 24 24 DT DT C . n C 1 5 DC 5 25 25 DC DC C . n C 1 6 DG 6 26 26 DG DG C . n C 1 7 DA 7 27 27 DA DA C . n C 1 8 BRU 8 28 28 BRU BRU C . n C 1 9 DC 9 29 29 DC DC C . n C 1 10 DG 10 30 30 DG DG C . n D 1 1 DC 1 31 31 DC DC D . n D 1 2 DG 2 32 32 DG DG D . n D 1 3 DA 3 33 33 DA DA D . n D 1 4 DT 4 34 34 DT DT D . n D 1 5 DC 5 35 35 DC DC D . n D 1 6 DG 6 36 36 DG DG D . n D 1 7 DA 7 37 37 DA DA D . n D 1 8 BRU 8 38 38 BRU BRU D . n D 1 9 DC 9 39 39 DC DC D . n D 1 10 DG 10 40 40 DG DG D . n E 2 1 THR 1 1 1 THR THR E . n E 2 2 DVA 2 2 2 DVA DVA E . n E 2 3 PRO 3 3 3 PRO PRO E . n E 2 4 SAR 4 4 4 SAR SAR E . n E 2 5 MVA 5 5 5 MVA MVA E . n E 2 6 PXZ 6 6 6 PXZ PXZ E . n E 2 7 THR 7 7 7 THR THR E . n E 2 8 DVA 8 8 8 DVA DVA E . n E 2 9 PRO 9 9 9 PRO PRO E . n E 2 10 SAR 10 10 10 SAR SAR E . n E 2 11 MVA 11 11 11 MVA MVA E . n F 2 1 THR 1 1 1 THR THR F . n F 2 2 DVA 2 2 2 DVA DVA F . n F 2 3 PRO 3 3 3 PRO PRO F . n F 2 4 SAR 4 4 4 SAR SAR F . n F 2 5 MVA 5 5 5 MVA MVA F . n F 2 6 PXZ 6 6 6 PXZ PXZ F . n F 2 7 THR 7 7 7 THR THR F . n F 2 8 DVA 8 8 8 DVA DVA F . n F 2 9 PRO 9 9 9 PRO PRO F . n F 2 10 SAR 10 10 10 SAR SAR F . n F 2 11 MVA 11 11 11 MVA MVA F . n G 2 1 THR 1 1 1 THR THR G . n G 2 2 DVA 2 2 2 DVA DVA G . n G 2 3 PRO 3 3 3 PRO PRO G . n G 2 4 SAR 4 4 4 SAR SAR G . n G 2 5 MVA 5 5 5 MVA MVA G . n G 2 6 PXZ 6 6 6 PXZ PXZ G . n G 2 7 THR 7 7 7 THR THR G . n G 2 8 DVA 8 8 8 DVA DVA G . n G 2 9 PRO 9 9 9 PRO PRO G . n G 2 10 SAR 10 10 10 SAR SAR G . n G 2 11 MVA 11 11 11 MVA MVA G . n H 2 1 THR 1 1 1 THR THR H . n H 2 2 DVA 2 2 2 DVA DVA H . n H 2 3 PRO 3 3 3 PRO PRO H . n H 2 4 SAR 4 4 4 SAR SAR H . n H 2 5 MVA 5 5 5 MVA MVA H . n H 2 6 PXZ 6 6 6 PXZ PXZ H . n H 2 7 THR 7 7 7 THR THR H . n H 2 8 DVA 8 8 8 DVA DVA H . n H 2 9 PRO 9 9 9 PRO PRO H . n H 2 10 SAR 10 10 10 SAR SAR H . n H 2 11 MVA 11 11 11 MVA MVA H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HOH 1 2001 2001 HOH HOH A . I 3 HOH 2 2002 2002 HOH HOH A . I 3 HOH 3 2003 2003 HOH HOH A . I 3 HOH 4 2004 2004 HOH HOH A . I 3 HOH 5 2005 2005 HOH HOH A . I 3 HOH 6 2006 2006 HOH HOH A . I 3 HOH 7 2007 2007 HOH HOH A . I 3 HOH 8 2008 2008 HOH HOH A . I 3 HOH 9 2009 2009 HOH HOH A . I 3 HOH 10 2010 2010 HOH HOH A . I 3 HOH 11 2011 2011 HOH HOH A . I 3 HOH 12 2012 2012 HOH HOH A . I 3 HOH 13 2013 2013 HOH HOH A . I 3 HOH 14 2014 2014 HOH HOH A . I 3 HOH 15 2015 2015 HOH HOH A . I 3 HOH 16 2016 2016 HOH HOH A . I 3 HOH 17 2017 2017 HOH HOH A . I 3 HOH 18 2018 2018 HOH HOH A . I 3 HOH 19 2019 2019 HOH HOH A . I 3 HOH 20 2020 2020 HOH HOH A . I 3 HOH 21 2021 2021 HOH HOH A . I 3 HOH 22 2022 2022 HOH HOH A . I 3 HOH 23 2023 2023 HOH HOH A . I 3 HOH 24 2024 2024 HOH HOH A . I 3 HOH 25 2025 2025 HOH HOH A . I 3 HOH 26 2026 2026 HOH HOH A . I 3 HOH 27 2027 2027 HOH HOH A . I 3 HOH 28 2028 2028 HOH HOH A . I 3 HOH 29 2029 2029 HOH HOH A . I 3 HOH 30 2030 2030 HOH HOH A . I 3 HOH 31 2031 2031 HOH HOH A . I 3 HOH 32 2032 2032 HOH HOH A . I 3 HOH 33 2033 2033 HOH HOH A . I 3 HOH 34 2034 2034 HOH HOH A . J 3 HOH 1 2001 2001 HOH HOH B . J 3 HOH 2 2002 2002 HOH HOH B . J 3 HOH 3 2003 2003 HOH HOH B . J 3 HOH 4 2004 2004 HOH HOH B . J 3 HOH 5 2005 2005 HOH HOH B . J 3 HOH 6 2006 2006 HOH HOH B . J 3 HOH 7 2007 2007 HOH HOH B . J 3 HOH 8 2008 2008 HOH HOH B . J 3 HOH 9 2009 2009 HOH HOH B . J 3 HOH 10 2010 2010 HOH HOH B . J 3 HOH 11 2011 2011 HOH HOH B . J 3 HOH 12 2012 2012 HOH HOH B . J 3 HOH 13 2013 2013 HOH HOH B . J 3 HOH 14 2014 2014 HOH HOH B . J 3 HOH 15 2015 2015 HOH HOH B . J 3 HOH 16 2016 2016 HOH HOH B . J 3 HOH 17 2017 2017 HOH HOH B . J 3 HOH 18 2018 2018 HOH HOH B . J 3 HOH 19 2019 2019 HOH HOH B . J 3 HOH 20 2020 2020 HOH HOH B . J 3 HOH 21 2021 2021 HOH HOH B . J 3 HOH 22 2022 2022 HOH HOH B . J 3 HOH 23 2023 2023 HOH HOH B . J 3 HOH 24 2024 2024 HOH HOH B . J 3 HOH 25 2025 2025 HOH HOH B . J 3 HOH 26 2026 2026 HOH HOH B . J 3 HOH 27 2027 2027 HOH HOH B . J 3 HOH 28 2028 2028 HOH HOH B . J 3 HOH 29 2029 2029 HOH HOH B . J 3 HOH 30 2030 2030 HOH HOH B . J 3 HOH 31 2031 2031 HOH HOH B . J 3 HOH 32 2032 2032 HOH HOH B . J 3 HOH 33 2033 2033 HOH HOH B . J 3 HOH 34 2034 2034 HOH HOH B . J 3 HOH 35 2035 2035 HOH HOH B . J 3 HOH 36 2036 2036 HOH HOH B . J 3 HOH 37 2037 2037 HOH HOH B . J 3 HOH 38 2038 2038 HOH HOH B . J 3 HOH 39 2039 2039 HOH HOH B . J 3 HOH 40 2040 2040 HOH HOH B . J 3 HOH 41 2041 2041 HOH HOH B . J 3 HOH 42 2042 2042 HOH HOH B . K 3 HOH 1 2001 2001 HOH HOH C . K 3 HOH 2 2002 2002 HOH HOH C . K 3 HOH 3 2003 2003 HOH HOH C . K 3 HOH 4 2004 2004 HOH HOH C . K 3 HOH 5 2005 2005 HOH HOH C . K 3 HOH 6 2006 2006 HOH HOH C . K 3 HOH 7 2007 2007 HOH HOH C . K 3 HOH 8 2008 2008 HOH HOH C . K 3 HOH 9 2009 2009 HOH HOH C . K 3 HOH 10 2010 2010 HOH HOH C . K 3 HOH 11 2011 2011 HOH HOH C . K 3 HOH 12 2012 2012 HOH HOH C . K 3 HOH 13 2013 2013 HOH HOH C . K 3 HOH 14 2014 2014 HOH HOH C . K 3 HOH 15 2015 2015 HOH HOH C . K 3 HOH 16 2016 2016 HOH HOH C . K 3 HOH 17 2017 2017 HOH HOH C . K 3 HOH 18 2018 2018 HOH HOH C . K 3 HOH 19 2019 2019 HOH HOH C . K 3 HOH 20 2020 2020 HOH HOH C . K 3 HOH 21 2021 2021 HOH HOH C . K 3 HOH 22 2022 2022 HOH HOH C . K 3 HOH 23 2023 2023 HOH HOH C . K 3 HOH 24 2024 2024 HOH HOH C . K 3 HOH 25 2025 2025 HOH HOH C . K 3 HOH 26 2026 2026 HOH HOH C . K 3 HOH 27 2027 2027 HOH HOH C . K 3 HOH 28 2028 2028 HOH HOH C . K 3 HOH 29 2029 2029 HOH HOH C . K 3 HOH 30 2030 2030 HOH HOH C . K 3 HOH 31 2031 2031 HOH HOH C . K 3 HOH 32 2032 2032 HOH HOH C . K 3 HOH 33 2033 2033 HOH HOH C . L 3 HOH 1 2001 2001 HOH HOH D . L 3 HOH 2 2002 2002 HOH HOH D . L 3 HOH 3 2003 2003 HOH HOH D . L 3 HOH 4 2004 2004 HOH HOH D . L 3 HOH 5 2005 2005 HOH HOH D . L 3 HOH 6 2006 2006 HOH HOH D . L 3 HOH 7 2007 2007 HOH HOH D . L 3 HOH 8 2008 2008 HOH HOH D . L 3 HOH 9 2009 2009 HOH HOH D . L 3 HOH 10 2010 2010 HOH HOH D . L 3 HOH 11 2011 2011 HOH HOH D . L 3 HOH 12 2012 2012 HOH HOH D . L 3 HOH 13 2013 2013 HOH HOH D . L 3 HOH 14 2014 2014 HOH HOH D . L 3 HOH 15 2015 2015 HOH HOH D . L 3 HOH 16 2016 2016 HOH HOH D . L 3 HOH 17 2017 2017 HOH HOH D . L 3 HOH 18 2018 2018 HOH HOH D . L 3 HOH 19 2019 2019 HOH HOH D . L 3 HOH 20 2020 2020 HOH HOH D . L 3 HOH 21 2021 2021 HOH HOH D . L 3 HOH 22 2022 2022 HOH HOH D . L 3 HOH 23 2023 2023 HOH HOH D . L 3 HOH 24 2024 2024 HOH HOH D . L 3 HOH 25 2025 2025 HOH HOH D . L 3 HOH 26 2026 2026 HOH HOH D . L 3 HOH 27 2027 2027 HOH HOH D . L 3 HOH 28 2028 2028 HOH HOH D . L 3 HOH 29 2029 2029 HOH HOH D . L 3 HOH 30 2030 2030 HOH HOH D . L 3 HOH 31 2031 2031 HOH HOH D . L 3 HOH 32 2032 2032 HOH HOH D . L 3 HOH 33 2033 2033 HOH HOH D . L 3 HOH 34 2034 2034 HOH HOH D . L 3 HOH 35 2035 2035 HOH HOH D . L 3 HOH 36 2036 2036 HOH HOH D . L 3 HOH 37 2037 2037 HOH HOH D . L 3 HOH 38 2038 2038 HOH HOH D . L 3 HOH 39 2039 2039 HOH HOH D . L 3 HOH 40 2040 2040 HOH HOH D . L 3 HOH 41 2041 2041 HOH HOH D . L 3 HOH 42 2042 2042 HOH HOH D . L 3 HOH 43 2043 2043 HOH HOH D . L 3 HOH 44 2044 2044 HOH HOH D . M 3 HOH 1 2001 2001 HOH HOH E . M 3 HOH 2 2002 2002 HOH HOH E . M 3 HOH 3 2003 2003 HOH HOH E . M 3 HOH 4 2004 2004 HOH HOH E . M 3 HOH 5 2005 2005 HOH HOH E . M 3 HOH 6 2006 2006 HOH HOH E . M 3 HOH 7 2007 2007 HOH HOH E . M 3 HOH 8 2008 2008 HOH HOH E . M 3 HOH 9 2009 2009 HOH HOH E . N 3 HOH 1 2001 2001 HOH HOH F . N 3 HOH 2 2002 2002 HOH HOH F . N 3 HOH 3 2003 2003 HOH HOH F . N 3 HOH 4 2004 2004 HOH HOH F . N 3 HOH 5 2005 2005 HOH HOH F . N 3 HOH 6 2006 2006 HOH HOH F . N 3 HOH 7 2007 2007 HOH HOH F . N 3 HOH 8 2008 2008 HOH HOH F . N 3 HOH 9 2009 2009 HOH HOH F . O 3 HOH 1 2001 2001 HOH HOH G . O 3 HOH 2 2002 2002 HOH HOH G . O 3 HOH 3 2003 2003 HOH HOH G . O 3 HOH 4 2004 2004 HOH HOH G . O 3 HOH 5 2005 2005 HOH HOH G . O 3 HOH 6 2006 2006 HOH HOH G . O 3 HOH 7 2007 2007 HOH HOH G . O 3 HOH 8 2008 2008 HOH HOH G . O 3 HOH 9 2009 2009 HOH HOH G . O 3 HOH 10 2010 2010 HOH HOH G . P 3 HOH 1 2001 2001 HOH HOH H . P 3 HOH 2 2002 2002 HOH HOH H . P 3 HOH 3 2003 2003 HOH HOH H . P 3 HOH 4 2004 2004 HOH HOH H . P 3 HOH 5 2005 2005 HOH HOH H . P 3 HOH 6 2006 2006 HOH HOH H . P 3 HOH 7 2007 2007 HOH HOH H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 2 ? P ? A DG 2 P 2 1 Y 1 A DG 2 ? OP1 ? A DG 2 OP1 3 1 Y 1 A DG 2 ? OP2 ? A DG 2 OP2 4 1 Y 1 C DG 22 ? P ? C DG 2 P 5 1 Y 1 C DG 22 ? OP1 ? C DG 2 OP1 6 1 Y 1 C DG 22 ? OP2 ? C DG 2 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 CNS refinement . ? 2 d*TREK 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 1I3W _cell.length_a 47.013 _cell.length_b 47.013 _cell.length_c 160.368 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I3W _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 1I3W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.49 _exptl_crystal.density_percent_sol 64.74 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'GLYCINE BUFFER, BARIUM CHLORIDE, SPERMINE, PEG400, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'glycine buffer' ? ? ? 1 2 1 'barium chloride' ? ? ? 1 3 1 spermine ? ? ? 1 4 1 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1999-02-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9530 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.9530 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1I3W _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 19747 _reflns.number_all ? _reflns.percent_possible_obs 95.2 _reflns.pdbx_Rmerge_I_obs 0.05700 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.800 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 88.3 _reflns_shell.Rmerge_I_obs 0.53000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.000 _reflns_shell.pdbx_redundancy 3.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1I3W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 19747 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 95.2 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_all 0.239 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 980 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'SHELX-97 SWAT' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'A POSTERIORI' _refine.details 'SHELX-97 HOPE' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'G. PARKINSON, J. VOJTECHOSKY, L. CLOWNEY, A.T. BRUNGER, H.M. BERMAN' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'RANDOM 5%' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 360 _refine_hist.pdbx_number_atoms_nucleic_acid 770 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1318 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.068 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.039 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.081 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1I3W _pdbx_refine.R_factor_all_no_cutoff 0.239 _pdbx_refine.R_factor_obs_no_cutoff 0.237 _pdbx_refine.free_R_factor_no_cutoff 0.279 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 980 _pdbx_refine.R_factor_all_4sig_cutoff 0.231 _pdbx_refine.R_factor_obs_4sig_cutoff 0.230 _pdbx_refine.free_R_factor_4sig_cutoff 0.270 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.200 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 839 _pdbx_refine.number_reflns_obs_4sig_cutoff 16195 # _database_PDB_matrix.entry_id 1I3W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1I3W _struct.title 'ACTINOMYCIN D BINDING TO CGATCGATCG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I3W _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, MISMATCH, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1I3W 1 ? ? 1I3W ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I3W A 1 ? 10 ? 1I3W 1 ? 10 ? 1 10 2 1 1I3W B 1 ? 10 ? 1I3W 11 ? 20 ? 11 20 3 1 1I3W C 1 ? 10 ? 1I3W 21 ? 30 ? 21 30 4 1 1I3W D 1 ? 10 ? 1I3W 31 ? 40 ? 31 40 5 2 1I3W E 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 6 2 1I3W F 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 7 2 1I3W G 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 8 2 1I3W H 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J,M,N 2 1 C,D,G,H,K,L,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 7 "O3'" ? ? ? 1_555 A BRU 8 P ? ? A DA 7 A BRU 8 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? A BRU 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A BRU 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B DA 7 "O3'" ? ? ? 1_555 B BRU 8 P ? ? B DA 17 B BRU 18 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale4 covale both ? B BRU 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B BRU 18 B DC 19 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale5 covale both ? C DA 7 "O3'" ? ? ? 1_555 C BRU 8 P ? ? C DA 27 C BRU 28 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale6 covale both ? C BRU 8 "O3'" ? ? ? 1_555 C DC 9 P ? ? C BRU 28 C DC 29 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale7 covale both ? D DA 7 "O3'" ? ? ? 1_555 D BRU 8 P ? ? D DA 37 D BRU 38 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale8 covale both ? D BRU 8 "O3'" ? ? ? 1_555 D DC 9 P ? ? D BRU 38 D DC 39 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale9 covale both ? E THR 1 C ? ? ? 1_555 E DVA 2 N ? ? E THR 1 E DVA 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale one ? E THR 1 OG1 ? ? ? 1_555 E MVA 5 C ? ? E THR 1 E MVA 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale both ? E THR 1 N ? ? ? 1_555 E PXZ 6 C0 ? ? E THR 1 E PXZ 6 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale12 covale both ? E DVA 2 C ? ? ? 1_555 E PRO 3 N ? ? E DVA 2 E PRO 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? E PRO 3 C ? ? ? 1_555 E SAR 4 N ? ? E PRO 3 E SAR 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? E SAR 4 C ? ? ? 1_555 E MVA 5 N ? ? E SAR 4 E MVA 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? E PXZ 6 "C0'" ? ? ? 1_555 E THR 7 N ? ? E PXZ 6 E THR 7 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale16 covale both ? E THR 7 C ? ? ? 1_555 E DVA 8 N ? ? E THR 7 E DVA 8 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale17 covale one ? E THR 7 OG1 ? ? ? 1_555 E MVA 11 C ? ? E THR 7 E MVA 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale18 covale both ? E DVA 8 C ? ? ? 1_555 E PRO 9 N ? ? E DVA 8 E PRO 9 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale19 covale both ? E PRO 9 C ? ? ? 1_555 E SAR 10 N ? ? E PRO 9 E SAR 10 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale20 covale both ? E SAR 10 C ? ? ? 1_555 E MVA 11 N ? ? E SAR 10 E MVA 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale21 covale both ? F THR 1 C ? ? ? 1_555 F DVA 2 N ? ? F THR 1 F DVA 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale22 covale one ? F THR 1 OG1 ? ? ? 1_555 F MVA 5 C ? ? F THR 1 F MVA 5 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale23 covale both ? F THR 1 N ? ? ? 1_555 F PXZ 6 C0 ? ? F THR 1 F PXZ 6 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale24 covale both ? F DVA 2 C ? ? ? 1_555 F PRO 3 N ? ? F DVA 2 F PRO 3 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale25 covale both ? F PRO 3 C ? ? ? 1_555 F SAR 4 N ? ? F PRO 3 F SAR 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale26 covale both ? F SAR 4 C ? ? ? 1_555 F MVA 5 N ? ? F SAR 4 F MVA 5 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale27 covale both ? F PXZ 6 "C0'" ? ? ? 1_555 F THR 7 N ? ? F PXZ 6 F THR 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale28 covale both ? F THR 7 C ? ? ? 1_555 F DVA 8 N ? ? F THR 7 F DVA 8 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale29 covale one ? F THR 7 OG1 ? ? ? 1_555 F MVA 11 C ? ? F THR 7 F MVA 11 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale30 covale both ? F DVA 8 C ? ? ? 1_555 F PRO 9 N ? ? F DVA 8 F PRO 9 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale31 covale both ? F PRO 9 C ? ? ? 1_555 F SAR 10 N ? ? F PRO 9 F SAR 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale32 covale both ? F SAR 10 C ? ? ? 1_555 F MVA 11 N ? ? F SAR 10 F MVA 11 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale33 covale both ? G THR 1 C ? ? ? 1_555 G DVA 2 N ? ? G THR 1 G DVA 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale34 covale one ? G THR 1 OG1 ? ? ? 1_555 G MVA 5 C ? ? G THR 1 G MVA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale35 covale both ? G THR 1 N ? ? ? 1_555 G PXZ 6 C0 ? ? G THR 1 G PXZ 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale36 covale both ? G DVA 2 C ? ? ? 1_555 G PRO 3 N ? ? G DVA 2 G PRO 3 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale37 covale both ? G PRO 3 C ? ? ? 1_555 G SAR 4 N ? ? G PRO 3 G SAR 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale38 covale both ? G SAR 4 C ? ? ? 1_555 G MVA 5 N ? ? G SAR 4 G MVA 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale39 covale both ? G PXZ 6 "C0'" ? ? ? 1_555 G THR 7 N ? ? G PXZ 6 G THR 7 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale40 covale both ? G THR 7 C ? ? ? 1_555 G DVA 8 N ? ? G THR 7 G DVA 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale41 covale one ? G THR 7 OG1 ? ? ? 1_555 G MVA 11 C ? ? G THR 7 G MVA 11 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale42 covale both ? G DVA 8 C ? ? ? 1_555 G PRO 9 N ? ? G DVA 8 G PRO 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale43 covale both ? G PRO 9 C ? ? ? 1_555 G SAR 10 N ? ? G PRO 9 G SAR 10 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale44 covale both ? G SAR 10 C ? ? ? 1_555 G MVA 11 N ? ? G SAR 10 G MVA 11 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale45 covale both ? H THR 1 C ? ? ? 1_555 H DVA 2 N ? ? H THR 1 H DVA 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale46 covale one ? H THR 1 OG1 ? ? ? 1_555 H MVA 5 C ? ? H THR 1 H MVA 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale47 covale both ? H THR 1 N ? ? ? 1_555 H PXZ 6 C0 ? ? H THR 1 H PXZ 6 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale48 covale both ? H DVA 2 C ? ? ? 1_555 H PRO 3 N ? ? H DVA 2 H PRO 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale49 covale both ? H PRO 3 C ? ? ? 1_555 H SAR 4 N ? ? H PRO 3 H SAR 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale50 covale both ? H SAR 4 C ? ? ? 1_555 H MVA 5 N ? ? H SAR 4 H MVA 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale51 covale both ? H PXZ 6 "C0'" ? ? ? 1_555 H THR 7 N ? ? H PXZ 6 H THR 7 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale52 covale both ? H THR 7 C ? ? ? 1_555 H DVA 8 N ? ? H THR 7 H DVA 8 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale53 covale one ? H THR 7 OG1 ? ? ? 1_555 H MVA 11 C ? ? H THR 7 H MVA 11 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale54 covale both ? H DVA 8 C ? ? ? 1_555 H PRO 9 N ? ? H DVA 8 H PRO 9 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale55 covale both ? H PRO 9 C ? ? ? 1_555 H SAR 10 N ? ? H PRO 9 H SAR 10 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale56 covale both ? H SAR 10 C ? ? ? 1_555 H MVA 11 N ? ? H SAR 10 H MVA 11 1_555 ? ? ? ? ? ? ? 1.325 ? ? hydrog1 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B BRU 8 N3 ? ? A DA 7 B BRU 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B BRU 8 O4 ? ? A DA 7 B BRU 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A BRU 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? A BRU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A BRU 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? A BRU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 25 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 25 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 25 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 26 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 26 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 26 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D BRU 8 N3 ? ? C DA 27 D BRU 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D BRU 8 O4 ? ? C DA 27 D BRU 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C BRU 8 N3 ? ? ? 1_555 D DA 7 N1 ? ? C BRU 28 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C BRU 8 O4 ? ? ? 1_555 D DA 7 N6 ? ? C BRU 28 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 29 D DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 29 D DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 29 D DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 30 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 30 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 30 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR E 4 ? . . . . SAR E 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA E 5 ? . . . . MVA E 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR E 10 ? . . . . SAR E 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA E 11 ? . . . . MVA E 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 SAR F 4 ? . . . . SAR F 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 6 MVA F 5 ? . . . . MVA F 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 7 SAR F 10 ? . . . . SAR F 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 8 MVA F 11 ? . . . . MVA F 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 9 SAR G 4 ? . . . . SAR G 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 10 MVA G 5 ? . . . . MVA G 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 11 SAR G 10 ? . . . . SAR G 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 12 MVA G 11 ? . . . . MVA G 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 13 SAR H 4 ? . . . . SAR H 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 14 MVA H 5 ? . . . . MVA H 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 15 SAR H 10 ? . . . . SAR H 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 16 MVA H 11 ? . . . . MVA H 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 17 PXZ E 6 ? . . . . PXZ E 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 18 PXZ F 6 ? . . . . PXZ F 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 19 PXZ G 6 ? . . . . PXZ G 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 20 PXZ H 6 ? . . . . PXZ H 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 21 THR E 1 ? MVA E 5 ? THR E 1 ? 1_555 MVA E 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 22 THR E 1 ? PXZ E 6 ? THR E 1 ? 1_555 PXZ E 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 23 THR E 7 ? MVA E 11 ? THR E 7 ? 1_555 MVA E 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 24 THR F 1 ? MVA F 5 ? THR F 1 ? 1_555 MVA F 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 25 THR F 1 ? PXZ F 6 ? THR F 1 ? 1_555 PXZ F 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 26 THR F 7 ? MVA F 11 ? THR F 7 ? 1_555 MVA F 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 27 THR G 1 ? MVA G 5 ? THR G 1 ? 1_555 MVA G 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 28 THR G 1 ? PXZ G 6 ? THR G 1 ? 1_555 PXZ G 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 29 THR G 7 ? MVA G 11 ? THR G 7 ? 1_555 MVA G 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 30 THR H 1 ? MVA H 5 ? THR H 1 ? 1_555 MVA H 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 31 THR H 1 ? PXZ H 6 ? THR H 1 ? 1_555 PXZ H 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 32 THR H 7 ? MVA H 11 ? THR H 7 ? 1_555 MVA H 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 E . ? DVA 2 E PRO 3 E ? PRO 3 E 1 23.54 2 PRO 3 E . ? PRO 3 E SAR 4 E ? SAR 4 E 1 -6.40 3 PRO 9 E . ? PRO 9 E SAR 10 E ? SAR 10 E 1 1.34 4 DVA 2 F . ? DVA 2 F PRO 3 F ? PRO 3 F 1 -1.17 5 PRO 3 F . ? PRO 3 F SAR 4 F ? SAR 4 F 1 8.43 6 DVA 8 F . ? DVA 8 F PRO 9 F ? PRO 9 F 1 22.23 7 PRO 9 F . ? PRO 9 F SAR 10 F ? SAR 10 F 1 -7.73 8 PRO 3 G . ? PRO 3 G SAR 4 G ? SAR 4 G 1 -7.83 9 DVA 8 G . ? DVA 8 G PRO 9 G ? PRO 9 G 1 8.84 10 PRO 9 G . ? PRO 9 G SAR 10 G ? SAR 10 G 1 7.51 11 DVA 2 H . ? DVA 2 H PRO 3 H ? PRO 3 H 1 14.07 12 PRO 3 H . ? PRO 3 H SAR 4 H ? SAR 4 H 1 -8.14 13 DVA 8 H . ? DVA 8 H PRO 9 H ? PRO 9 H 1 13.09 14 PRO 9 H . ? PRO 9 H SAR 10 H ? SAR 10 H 1 -6.56 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN E OF ACTINOMYCIN D' AC2 Software ? ? ? ? 15 'BINDING SITE FOR CHAIN F OF ACTINOMYCIN D' AC3 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN G OF ACTINOMYCIN D' AC4 Software ? ? ? ? 15 'BINDING SITE FOR CHAIN H OF ACTINOMYCIN D' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 12 DA A 3 ? DA A 3 . ? 1_555 ? 3 AC1 12 DC A 5 ? DC A 5 . ? 1_555 ? 4 AC1 12 DG A 6 ? DG A 6 . ? 1_555 ? 5 AC1 12 DC B 1 ? DC B 11 . ? 4_555 ? 6 AC1 12 DC B 9 ? DC B 19 . ? 1_555 ? 7 AC1 12 DG B 10 ? DG B 20 . ? 1_555 ? 8 AC1 12 DT C 4 ? DT C 24 . ? 1_555 ? 9 AC1 12 HOH M . ? HOH E 2005 . ? 1_555 ? 10 AC1 12 HOH M . ? HOH E 2006 . ? 1_555 ? 11 AC1 12 HOH M . ? HOH E 2008 . ? 1_555 ? 12 AC1 12 HOH M . ? HOH E 2009 . ? 1_555 ? 13 AC2 15 DG A 2 ? DG A 2 . ? 3_544 ? 14 AC2 15 DC A 9 ? DC A 9 . ? 1_555 ? 15 AC2 15 DG A 10 ? DG A 10 . ? 1_555 ? 16 AC2 15 DC B 1 ? DC B 11 . ? 1_555 ? 17 AC2 15 DG B 2 ? DG B 12 . ? 1_555 ? 18 AC2 15 DA B 3 ? DA B 13 . ? 1_555 ? 19 AC2 15 DC B 5 ? DC B 15 . ? 1_555 ? 20 AC2 15 DG B 6 ? DG B 16 . ? 1_555 ? 21 AC2 15 DT D 4 ? DT D 34 . ? 1_555 ? 22 AC2 15 HOH N . ? HOH F 2004 . ? 1_555 ? 23 AC2 15 HOH N . ? HOH F 2006 . ? 1_555 ? 24 AC2 15 HOH N . ? HOH F 2007 . ? 1_555 ? 25 AC2 15 HOH N . ? HOH F 2008 . ? 1_555 ? 26 AC2 15 HOH N . ? HOH F 2009 . ? 1_555 ? 27 AC2 15 MVA H 11 ? MVA H 11 . ? 7_545 ? 28 AC3 10 DT A 4 ? DT A 4 . ? 1_555 ? 29 AC3 10 DG C 2 ? DG C 22 . ? 1_555 ? 30 AC3 10 DA C 3 ? DA C 23 . ? 1_555 ? 31 AC3 10 DC C 5 ? DC C 25 . ? 1_555 ? 32 AC3 10 DG C 6 ? DG C 26 . ? 1_555 ? 33 AC3 10 DC D 1 ? DC D 31 . ? 4_565 ? 34 AC3 10 DG D 10 ? DG D 40 . ? 1_555 ? 35 AC3 10 HOH O . ? HOH G 2007 . ? 1_555 ? 36 AC3 10 HOH O . ? HOH G 2008 . ? 1_555 ? 37 AC3 10 HOH O . ? HOH G 2010 . ? 1_555 ? 38 AC4 15 DT B 4 ? DT B 14 . ? 1_555 ? 39 AC4 15 DG C 2 ? DG C 22 . ? 3_644 ? 40 AC4 15 DG C 10 ? DG C 30 . ? 1_555 ? 41 AC4 15 DC D 1 ? DC D 31 . ? 1_555 ? 42 AC4 15 DG D 2 ? DG D 32 . ? 1_555 ? 43 AC4 15 DA D 3 ? DA D 33 . ? 1_555 ? 44 AC4 15 DC D 5 ? DC D 35 . ? 1_555 ? 45 AC4 15 DG D 6 ? DG D 36 . ? 1_555 ? 46 AC4 15 MVA F 11 ? MVA F 11 . ? 7_655 ? 47 AC4 15 HOH P . ? HOH H 2001 . ? 1_555 ? 48 AC4 15 HOH P . ? HOH H 2003 . ? 1_555 ? 49 AC4 15 HOH P . ? HOH H 2004 . ? 1_555 ? 50 AC4 15 HOH P . ? HOH H 2005 . ? 1_555 ? 51 AC4 15 HOH P . ? HOH H 2006 . ? 1_555 ? 52 AC4 15 HOH P . ? HOH H 2007 . ? 1_555 ? # _pdbx_entry_details.entry_id 1I3W _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C8 A DG 2 ? ? N9 A DG 2 ? ? "C1'" A DG 2 ? ? 118.68 127.00 -8.32 1.30 N 2 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.51 109.40 -5.89 0.80 N 3 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 131.77 120.90 10.87 1.60 N 4 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 122.89 120.30 2.59 0.40 N 5 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.99 108.30 2.69 0.30 N 6 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 104.44 109.40 -4.96 0.80 N 7 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.71 108.30 2.41 0.30 N 8 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.91 108.30 3.61 0.30 N 9 1 "C3'" B BRU 18 ? ? "O3'" B BRU 18 ? ? P B DC 19 ? ? 111.78 119.70 -7.92 1.20 Y 10 1 N3 B DG 20 ? ? C4 B DG 20 ? ? N9 B DG 20 ? ? 120.85 126.00 -5.15 0.60 N 11 1 N3 C DG 26 ? ? C4 C DG 26 ? ? C5 C DG 26 ? ? 131.68 128.60 3.08 0.50 N 12 1 "O5'" D DT 34 ? ? "C5'" D DT 34 ? ? "C4'" D DT 34 ? ? 103.92 109.40 -5.48 0.80 N 13 1 N1 D DC 35 ? ? C2 D DC 35 ? ? O2 D DC 35 ? ? 115.09 118.90 -3.81 0.60 N 14 1 "O4'" D DG 36 ? ? "C1'" D DG 36 ? ? N9 D DG 36 ? ? 103.26 108.00 -4.74 0.70 N 15 1 "O4'" D DC 39 ? ? "C4'" D DC 39 ? ? "C3'" D DC 39 ? ? 101.90 104.50 -2.60 0.40 N 16 1 "O4'" D DG 40 ? ? "C4'" D DG 40 ? ? "C3'" D DG 40 ? ? 101.29 104.50 -3.21 0.40 N 17 1 "O4'" D DG 40 ? ? "C1'" D DG 40 ? ? N9 D DG 40 ? ? 112.59 108.30 4.29 0.30 N # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 DVA E 8 ? ? PRO E 9 ? ? 30.64 2 1 DVA G 2 ? ? PRO G 3 ? ? 35.76 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 3 ? ? 0.075 'SIDE CHAIN' 2 1 DG A 10 ? ? 0.051 'SIDE CHAIN' 3 1 DC B 11 ? ? 0.072 'SIDE CHAIN' 4 1 DA B 13 ? ? 0.066 'SIDE CHAIN' 5 1 DT B 14 ? ? 0.095 'SIDE CHAIN' 6 1 DG B 20 ? ? 0.055 'SIDE CHAIN' 7 1 DG C 22 ? ? 0.085 'SIDE CHAIN' 8 1 DA C 23 ? ? 0.074 'SIDE CHAIN' 9 1 DG C 26 ? ? 0.076 'SIDE CHAIN' 10 1 DG D 32 ? ? 0.076 'SIDE CHAIN' 11 1 DT D 34 ? ? 0.061 'SIDE CHAIN' 12 1 DG D 40 ? ? 0.068 'SIDE CHAIN' # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000001 E 2 PRD_000001 F 3 PRD_000001 G 4 PRD_000001 H # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 8 A BRU 8 ? U 'URACIL MODIFIED WITH BR' 2 B BRU 8 B BRU 18 ? U 'URACIL MODIFIED WITH BR' 3 C BRU 8 C BRU 28 ? U 'URACIL MODIFIED WITH BR' 4 D BRU 8 D BRU 38 ? U 'URACIL MODIFIED WITH BR' # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 1 ? A DC 1 2 1 Y 1 C DC 21 ? C DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 DVA N N N N 177 DVA CA C N R 178 DVA CB C N N 179 DVA CG1 C N N 180 DVA CG2 C N N 181 DVA C C N N 182 DVA O O N N 183 DVA OXT O N N 184 DVA H H N N 185 DVA H2 H N N 186 DVA HA H N N 187 DVA HB H N N 188 DVA HG11 H N N 189 DVA HG12 H N N 190 DVA HG13 H N N 191 DVA HG21 H N N 192 DVA HG22 H N N 193 DVA HG23 H N N 194 DVA HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 MVA N N N N 199 MVA CN C N N 200 MVA CA C N S 201 MVA CB C N N 202 MVA CG1 C N N 203 MVA CG2 C N N 204 MVA C C N N 205 MVA O O N N 206 MVA OXT O N N 207 MVA H H N N 208 MVA HN1 H N N 209 MVA HN2 H N N 210 MVA HN3 H N N 211 MVA HA H N N 212 MVA HB H N N 213 MVA HG11 H N N 214 MVA HG12 H N N 215 MVA HG13 H N N 216 MVA HG21 H N N 217 MVA HG22 H N N 218 MVA HG23 H N N 219 MVA HXT H N N 220 PRO N N N N 221 PRO CA C N S 222 PRO C C N N 223 PRO O O N N 224 PRO CB C N N 225 PRO CG C N N 226 PRO CD C N N 227 PRO OXT O N N 228 PRO H H N N 229 PRO HA H N N 230 PRO HB2 H N N 231 PRO HB3 H N N 232 PRO HG2 H N N 233 PRO HG3 H N N 234 PRO HD2 H N N 235 PRO HD3 H N N 236 PRO HXT H N N 237 PXZ C1 C N N 238 PXZ C0 C N N 239 PXZ O1 O N N 240 PXZ C2 C N N 241 PXZ N2 N N N 242 PXZ C3 C N N 243 PXZ O3 O N N 244 PXZ C4 C N N 245 PXZ O5 O N N 246 PXZ C6 C Y N 247 PXZ C7 C Y N 248 PXZ C8 C Y N 249 PXZ C9 C Y N 250 PXZ "C0'" C N N 251 PXZ "O1'" O N N 252 PXZ N10 N N N 253 PXZ C11 C N N 254 PXZ C12 C N N 255 PXZ C13 C Y N 256 PXZ C14 C Y N 257 PXZ C15 C N N 258 PXZ C16 C N N 259 PXZ HN21 H N N 260 PXZ HN22 H N N 261 PXZ H7 H N N 262 PXZ H8 H N N 263 PXZ H151 H N N 264 PXZ H152 H N N 265 PXZ H153 H N N 266 PXZ H161 H N N 267 PXZ H162 H N N 268 PXZ H163 H N N 269 PXZ "OXT'" O N N 270 PXZ OXT O N N 271 PXZ "HXT'" H N N 272 PXZ HXT H N N 273 SAR N N N N 274 SAR CA C N N 275 SAR C C N N 276 SAR O O N N 277 SAR CN C N N 278 SAR OXT O N N 279 SAR H H N N 280 SAR HA2 H N N 281 SAR HA3 H N N 282 SAR HN1 H N N 283 SAR HN2 H N N 284 SAR HN3 H N N 285 SAR HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 DVA N CA sing N N 184 DVA N H sing N N 185 DVA N H2 sing N N 186 DVA CA CB sing N N 187 DVA CA C sing N N 188 DVA CA HA sing N N 189 DVA CB CG1 sing N N 190 DVA CB CG2 sing N N 191 DVA CB HB sing N N 192 DVA CG1 HG11 sing N N 193 DVA CG1 HG12 sing N N 194 DVA CG1 HG13 sing N N 195 DVA CG2 HG21 sing N N 196 DVA CG2 HG22 sing N N 197 DVA CG2 HG23 sing N N 198 DVA C O doub N N 199 DVA C OXT sing N N 200 DVA OXT HXT sing N N 201 HOH O H1 sing N N 202 HOH O H2 sing N N 203 MVA N CN sing N N 204 MVA N CA sing N N 205 MVA N H sing N N 206 MVA CN HN1 sing N N 207 MVA CN HN2 sing N N 208 MVA CN HN3 sing N N 209 MVA CA CB sing N N 210 MVA CA C sing N N 211 MVA CA HA sing N N 212 MVA CB CG1 sing N N 213 MVA CB CG2 sing N N 214 MVA CB HB sing N N 215 MVA CG1 HG11 sing N N 216 MVA CG1 HG12 sing N N 217 MVA CG1 HG13 sing N N 218 MVA CG2 HG21 sing N N 219 MVA CG2 HG22 sing N N 220 MVA CG2 HG23 sing N N 221 MVA C O doub N N 222 MVA C OXT sing N N 223 MVA OXT HXT sing N N 224 PRO N CA sing N N 225 PRO N CD sing N N 226 PRO N H sing N N 227 PRO CA C sing N N 228 PRO CA CB sing N N 229 PRO CA HA sing N N 230 PRO C O doub N N 231 PRO C OXT sing N N 232 PRO CB CG sing N N 233 PRO CB HB2 sing N N 234 PRO CB HB3 sing N N 235 PRO CG CD sing N N 236 PRO CG HG2 sing N N 237 PRO CG HG3 sing N N 238 PRO CD HD2 sing N N 239 PRO CD HD3 sing N N 240 PRO OXT HXT sing N N 241 PXZ C1 C0 sing N N 242 PXZ C1 C2 doub N N 243 PXZ C1 C11 sing N N 244 PXZ C0 O1 doub N N 245 PXZ C2 N2 sing N N 246 PXZ C2 C3 sing N N 247 PXZ N2 HN21 sing N N 248 PXZ N2 HN22 sing N N 249 PXZ C3 O3 doub N N 250 PXZ C3 C4 sing N N 251 PXZ C4 C12 doub N N 252 PXZ C4 C15 sing N N 253 PXZ O5 C12 sing N N 254 PXZ O5 C13 sing N N 255 PXZ C6 C7 doub Y N 256 PXZ C6 C13 sing Y N 257 PXZ C6 C16 sing N N 258 PXZ C7 C8 sing Y N 259 PXZ C7 H7 sing N N 260 PXZ C8 C9 doub Y N 261 PXZ C8 H8 sing N N 262 PXZ C9 "C0'" sing N N 263 PXZ C9 C14 sing Y N 264 PXZ "C0'" "O1'" doub N N 265 PXZ N10 C11 doub N N 266 PXZ N10 C14 sing N N 267 PXZ C11 C12 sing N N 268 PXZ C13 C14 doub Y N 269 PXZ C15 H151 sing N N 270 PXZ C15 H152 sing N N 271 PXZ C15 H153 sing N N 272 PXZ C16 H161 sing N N 273 PXZ C16 H162 sing N N 274 PXZ C16 H163 sing N N 275 PXZ "C0'" "OXT'" sing N N 276 PXZ C0 OXT sing N N 277 PXZ "OXT'" "HXT'" sing N N 278 PXZ OXT HXT sing N N 279 SAR N CA sing N N 280 SAR N CN sing N N 281 SAR N H sing N N 282 SAR CA C sing N N 283 SAR CA HA2 sing N N 284 SAR CA HA3 sing N N 285 SAR C O doub N N 286 SAR C OXT sing N N 287 SAR CN HN1 sing N N 288 SAR CN HN2 sing N N 289 SAR CN HN3 sing N N 290 SAR OXT HXT sing N N 291 THR N CA sing N N 292 THR N H sing N N 293 THR N H2 sing N N 294 THR CA C sing N N 295 THR CA CB sing N N 296 THR CA HA sing N N 297 THR C O doub N N 298 THR C OXT sing N N 299 THR CB OG1 sing N N 300 THR CB CG2 sing N N 301 THR CB HB sing N N 302 THR OG1 HG1 sing N N 303 THR CG2 HG21 sing N N 304 THR CG2 HG22 sing N N 305 THR CG2 HG23 sing N N 306 THR OXT HXT sing N N 307 # _ndb_struct_conf_na.entry_id 1I3W _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 5 1_555 B DG 10 1_555 0.234 -0.151 0.227 6.034 5.772 -1.023 1 A_DC5:DG20_B A 5 ? B 20 ? 19 1 1 A DG 6 1_555 B DC 9 1_555 -0.298 -0.145 -0.317 -9.161 -9.936 3.966 2 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DA 7 1_555 B BRU 8 1_555 0.085 -0.104 -0.111 -5.608 -8.756 2.450 3 A_DA7:BRU18_B A 7 ? B 18 ? 20 1 1 A BRU 8 1_555 B DA 7 1_555 -0.176 -0.074 -0.287 12.238 -7.010 1.803 4 A_BRU8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 6 1_555 0.221 -0.293 -0.371 8.666 -10.911 2.954 5 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 5 1_555 -0.265 -0.184 0.071 -6.028 4.633 -1.740 6 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 C DC 5 1_555 D DG 10 1_555 0.157 -0.235 0.438 6.483 5.879 -3.125 7 C_DC25:DG40_D C 25 ? D 40 ? 19 1 1 C DG 6 1_555 D DC 9 1_555 0.012 -0.254 -0.139 -6.797 -7.785 1.402 8 C_DG26:DC39_D C 26 ? D 39 ? 19 1 1 C DA 7 1_555 D BRU 8 1_555 0.106 0.004 0.231 3.471 -12.089 1.335 9 C_DA27:BRU38_D C 27 ? D 38 ? 20 1 1 C BRU 8 1_555 D DA 7 1_555 -0.248 -0.131 0.010 5.433 -8.623 -1.241 10 C_BRU28:DA37_D C 28 ? D 37 ? 20 1 1 C DC 9 1_555 D DG 6 1_555 0.383 -0.244 -0.206 7.992 -13.398 2.605 11 C_DC29:DG36_D C 29 ? D 36 ? 19 1 1 C DG 10 1_555 D DC 5 1_555 -0.321 -0.153 0.166 -5.281 1.834 0.345 12 C_DG30:DC35_D C 30 ? D 35 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 5 1_555 B DG 10 1_555 A DG 6 1_555 B DC 9 1_555 -1.812 0.942 6.665 -8.263 -1.571 26.306 2.784 -0.464 6.840 -3.344 17.593 27.596 1 AA_DC5DG6:DC19DG20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 9 1_555 A DA 7 1_555 B BRU 8 1_555 -0.591 0.343 3.205 -3.708 8.225 34.043 -0.662 0.423 3.242 13.751 6.199 35.184 2 AA_DG6DA7:BRU18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DA 7 1_555 B BRU 8 1_555 A BRU 8 1_555 B DA 7 1_555 0.261 -0.440 2.819 0.695 1.161 30.696 -1.027 -0.375 2.806 2.191 -1.313 30.725 3 AA_DA7BRU8:DA17BRU18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A BRU 8 1_555 B DA 7 1_555 A DC 9 1_555 B DG 6 1_555 0.201 0.170 3.353 2.058 5.400 37.542 -0.448 -0.038 3.351 8.330 -3.175 37.968 4 AA_BRU8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 6 1_555 A DG 10 1_555 B DC 5 1_555 1.485 1.155 6.799 8.117 -1.117 24.176 3.302 1.615 6.866 -2.575 -18.706 25.508 5 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 C DC 5 1_555 D DG 10 1_555 C DG 6 1_555 D DC 9 1_555 -1.879 0.444 6.728 -8.810 1.009 26.893 0.405 -0.553 6.992 2.098 18.321 28.292 6 CC_DC25DG26:DC39DG40_DD C 25 ? D 40 ? C 26 ? D 39 ? 1 C DG 6 1_555 D DC 9 1_555 C DA 7 1_555 D BRU 8 1_555 -0.380 0.046 3.045 -5.107 3.767 32.053 -0.533 -0.158 3.053 6.740 9.138 32.659 7 CC_DG26DA27:BRU38DC39_DD C 26 ? D 39 ? C 27 ? D 38 ? 1 C DA 7 1_555 D BRU 8 1_555 C BRU 8 1_555 D DA 7 1_555 0.104 -0.678 3.285 1.830 -2.091 29.191 -0.882 0.194 3.325 -4.137 -3.620 29.320 8 CC_DA27BRU28:DA37BRU38_DD C 27 ? D 38 ? C 28 ? D 37 ? 1 C BRU 8 1_555 D DA 7 1_555 C DC 9 1_555 D DG 6 1_555 0.311 0.005 3.146 3.318 4.619 41.050 -0.469 -0.098 3.143 6.550 -4.704 41.425 9 CC_BRU28DC29:DG36DA37_DD C 28 ? D 37 ? C 29 ? D 36 ? 1 C DC 9 1_555 D DG 6 1_555 C DG 10 1_555 D DC 5 1_555 1.608 0.987 6.763 9.651 0.262 22.482 2.153 2.734 6.865 0.637 -23.416 24.443 10 CC_DC29DG30:DC35DG36_DD C 29 ? D 36 ? C 30 ? D 35 ? # _atom_sites.entry_id 1I3W _atom_sites.fract_transf_matrix[1][1] 0.021271 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006236 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_