HEADER BLOOD CLOTTING 27-FEB-01 1I5K TITLE STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT KRINGLE-2 DOMAIN TITLE 2 OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE FROM A GROUP A TITLE 3 STREPTOCOCCAL SURFACE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MODIFIED RECOMBINANT KRINGLE-2 DOMAIN; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: M PROTEIN; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: VEK-30 (30 RESIDUE INTERNAL PEPTIDE); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: VEK-30 WAS SYNTHESIZED BY AUTOMATED SOLID PHASE SOURCE 10 PEPTIDE SYNTHESIS KEYWDS HUMAN PLASMINOGEN KRINGLE-2, KRINGLES, VEK-30, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR J.L.RIOS-STEINER,M.SCHENONE,I.MOCHALKIN,A.TULINSKY,F.J.CASTELLINO REVDAT 6 13-NOV-24 1I5K 1 REMARK REVDAT 5 09-AUG-23 1I5K 1 REMARK REVDAT 4 27-OCT-21 1I5K 1 SEQADV REVDAT 3 16-NOV-11 1I5K 1 VERSN HETATM REVDAT 2 24-FEB-09 1I5K 1 VERSN REVDAT 1 01-AUG-01 1I5K 0 JRNL AUTH J.L.RIOS-STEINER,M.SCHENONE,I.MOCHALKIN,A.TULINSKY, JRNL AUTH 2 F.J.CASTELLINO JRNL TITL STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT JRNL TITL 2 KRINGLE-2 DOMAIN OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE JRNL TITL 3 FROM A GROUP A STREPTOCOCCAL SURFACE PROTEIN. JRNL REF J.MOL.BIOL. V. 308 705 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11350170 JRNL DOI 10.1006/JMBI.2001.4646 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHANG,I.MOCHALKIN,S.G.MCCANCE,B.CHENG,A.TULINSKY, REMARK 1 AUTH 2 F.J.CASTELLINO REMARK 1 TITL STRUCTURE AND LIGAND BINDING DETERMINANTS OF THE RECOMBINANT REMARK 1 TITL 2 KRINGLE 5 DOMAIN OF HUMAN PLASMINOGEN. REMARK 1 REF BIOCHEMISTRY V. 37 3258 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI972284E REMARK 1 REFERENCE 2 REMARK 1 AUTH T.P.WU,K.PADMANABHAN,A.TULINSKY,A.M.MULICHAK REMARK 1 TITL THE REFINED STRUCTURE OF THE EPSILON-AMINOCAPROIC ACID REMARK 1 TITL 2 COMPLEX OF HUMAN PLASMINOGEN KRINGLE 4. REMARK 1 REF BIOCHEMISTRY V. 30 10589 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.C.WISTEDT,H.KOTARSKY,D.MARTI,U.RINGDAHL,F.J.CASTELLINO, REMARK 1 AUTH 2 J.SCHALLER,U.SJOBRING REMARK 1 TITL KRINGLE 2 MEDIATES HIGH AFFINITY BINDING OF PLASMINOGEN TO REMARK 1 TITL 2 AN INTERNAL SEQUENCE IN STREPTOCOCCAL SURFACE PROTEIN PAM. REMARK 1 REF J.BIOL.CHEM. V. 273 24420 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.273.38.24420 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.L.NILSEN,M.PROROK,F.J.CASTELLINO REMARK 1 TITL ENHANCEMENT TROUGH MUTAGENESIS OF THE BINDING OF THE REMARK 1 TITL 2 ISOLATED KRINGLE 2 DOMAIN OF HUMAN PLASMINOGEN TO REMARK 1 TITL 3 OMEGA-AMINO ACID LIGANDS AND TO AN INTERNAL SEQUENCE OF A REMARK 1 TITL 4 STREPTOCOCCAL SURFACE PROTEIN. REMARK 1 REF J.BIOL.CHEM. V. 274 22380 1999 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.274.32.22380 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 8667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.039 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: USING K4 PG (PDB ENTRY 1PK4) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23%(W/V) PEG 3350, 0.1 M MES, 0.2 M REMARK 280 LI2SO4, 2MM CACL2, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.18600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.88950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.48250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.29650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.59300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 101.18600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 126.48250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.88950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.29650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSEMBLY IN THE ASSYMETRIC UNIT CONSTITUTES REMARK 300 A DIMER OF THE MONOMERIC COMPLEX OF A KRINGLE-2:VEK30 COMPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 ALA A 79 REMARK 465 ALA A 80 REMARK 465 PHE B 97 REMARK 465 SER B 98 REMARK 465 ALA B 179 REMARK 465 ALA B 180 REMARK 465 VAL C 301 REMARK 465 SER C 328 REMARK 465 GLU C 329 REMARK 465 TYR C 330 REMARK 465 VAL D 401 REMARK 465 SER D 428 REMARK 465 GLU D 429 REMARK 465 TYR D 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 554 O HOH C 554 12555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 424 CG GLU D 424 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 155 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 161 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 3 -80.18 -65.08 REMARK 500 MET A 17 -1.67 -58.46 REMARK 500 TYR A 35 48.76 -99.66 REMARK 500 LYS A 47 -119.86 24.74 REMARK 500 LYS B 147 -108.20 40.89 REMARK 500 ASN B 148 31.49 -142.17 REMARK 500 LEU C 304 52.01 -101.75 REMARK 500 GLU D 424 -79.31 -38.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 3 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1I5K A 0 80 UNP P00747 PLMN_HUMAN 183 262 DBREF 1I5K B 100 180 UNP P00747 PLMN_HUMAN 183 262 DBREF 1I5K C 301 330 UNP P49054 PAM_STRPY 85 113 DBREF 1I5K D 401 430 UNP P49054 PAM_STRPY 85 113 SEQADV 1I5K PHE A -3 UNP P00747 CLONING ARTIFACT SEQADV 1I5K SER A -2 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLU A -1 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLY A 4 UNP P00747 CYS 188 ENGINEERED MUTATION SEQADV 1I5K ASP A 56 UNP P00747 GLU 240 ENGINEERED MUTATION SEQADV 1I5K TYR A 72 UNP P00747 LEU 256 ENGINEERED MUTATION SEQADV 1I5K ALA A 79 UNP P00747 THR 263 CONFLICT SEQADV 1I5K ALA A 80 UNP P00747 THR 264 CONFLICT SEQADV 1I5K PHE B 97 UNP P00747 CLONING ARTIFACT SEQADV 1I5K SER B 98 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLU B 99 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLY B 104 UNP P00747 CYS 188 ENGINEERED MUTATION SEQADV 1I5K ASP B 156 UNP P00747 GLU 240 ENGINEERED MUTATION SEQADV 1I5K TYR B 172 UNP P00747 LEU 256 ENGINEERED MUTATION SEQADV 1I5K ALA B 179 UNP P00747 THR 263 CONFLICT SEQADV 1I5K ALA B 180 UNP P00747 THR 264 CONFLICT SEQADV 1I5K TYR C 330 UNP P49054 ARG 114 CONFLICT SEQADV 1I5K TYR D 430 UNP P49054 ARG 114 CONFLICT SEQRES 1 A 84 PHE SER GLU GLU CYS MET HIS GLY SER GLY GLU ASN TYR SEQRES 2 A 84 ASP GLY LYS ILE SER LYS THR MET SER GLY LEU GLU CYS SEQRES 3 A 84 GLN ALA TRP ASP SER GLN SER PRO HIS ALA HIS GLY TYR SEQRES 4 A 84 ILE PRO SER LYS PHE PRO ASN LYS ASN LEU LYS LYS ASN SEQRES 5 A 84 TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG PRO TRP CYS SEQRES 6 A 84 PHE THR THR ASP PRO ASN LYS ARG TRP GLU TYR CYS ASP SEQRES 7 A 84 ILE PRO ARG CYS ALA ALA SEQRES 1 B 84 PHE SER GLU GLU CYS MET HIS GLY SER GLY GLU ASN TYR SEQRES 2 B 84 ASP GLY LYS ILE SER LYS THR MET SER GLY LEU GLU CYS SEQRES 3 B 84 GLN ALA TRP ASP SER GLN SER PRO HIS ALA HIS GLY TYR SEQRES 4 B 84 ILE PRO SER LYS PHE PRO ASN LYS ASN LEU LYS LYS ASN SEQRES 5 B 84 TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG PRO TRP CYS SEQRES 6 B 84 PHE THR THR ASP PRO ASN LYS ARG TRP GLU TYR CYS ASP SEQRES 7 B 84 ILE PRO ARG CYS ALA ALA SEQRES 1 C 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 C 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 C 30 LYS SER GLU TYR SEQRES 1 D 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 D 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 D 30 LYS SER GLU TYR FORMUL 5 HOH *133(H2 O) HELIX 1 1 PHE A 40 ASN A 44 5 5 HELIX 2 2 ILE B 136 PHE B 140 5 5 HELIX 3 3 PHE B 140 ASN B 144 5 5 HELIX 4 4 THR C 305 LYS C 327 1 23 HELIX 5 5 THR D 405 LYS D 427 1 23 SHEET 1 A 3 CYS A 22 GLN A 23 0 SHEET 2 A 3 TRP A 60 THR A 63 -1 O PHE A 62 N GLN A 23 SHEET 3 A 3 TRP A 70 TYR A 72 -1 O GLU A 71 N CYS A 61 SHEET 1 B 2 TRP B 160 PHE B 162 0 SHEET 2 B 2 TRP B 170 TYR B 172 -1 N GLU B 171 O CYS B 161 SSBOND 1 CYS A 1 CYS A 78 1555 1555 2.02 SSBOND 2 CYS A 22 CYS A 61 1555 1555 2.02 SSBOND 3 CYS A 50 CYS A 73 1555 1555 2.05 SSBOND 4 CYS B 101 CYS B 178 1555 1555 2.02 SSBOND 5 CYS B 122 CYS B 161 1555 1555 2.04 SSBOND 6 CYS B 150 CYS B 173 1555 1555 2.04 CISPEP 1 SER A 29 PRO A 30 0 1.06 CISPEP 2 SER B 129 PRO B 130 0 0.96 CRYST1 91.980 91.980 151.779 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010872 0.006277 0.000000 0.00000 SCALE2 0.000000 0.012554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000