HEADER BLOOD CLOTTING 27-FEB-01 1I5K TITLE STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT KRINGLE-2 DOMAIN TITLE 2 OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE FROM A GROUP A TITLE 3 STREPTOCOCCAL SURFACE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MODIFIED RECOMBINANT KRINGLE-2 DOMAIN; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: M PROTEIN; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: VEK-30 (30 RESIDUE INTERNAL PEPTIDE); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: VEK-30 WAS SYNTHESIZED BY AUTOMATED SOLID PHASE SOURCE 10 PEPTIDE SYNTHESIS KEYWDS HUMAN PLASMINOGEN KRINGLE-2, KRINGLES, VEK-30, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR J.L.RIOS-STEINER,M.SCHENONE,I.MOCHALKIN,A.TULINSKY,F.J.CASTELLINO REVDAT 6 13-NOV-24 1I5K 1 REMARK REVDAT 5 09-AUG-23 1I5K 1 REMARK REVDAT 4 27-OCT-21 1I5K 1 SEQADV REVDAT 3 16-NOV-11 1I5K 1 VERSN HETATM REVDAT 2 24-FEB-09 1I5K 1 VERSN REVDAT 1 01-AUG-01 1I5K 0 JRNL AUTH J.L.RIOS-STEINER,M.SCHENONE,I.MOCHALKIN,A.TULINSKY, JRNL AUTH 2 F.J.CASTELLINO JRNL TITL STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT JRNL TITL 2 KRINGLE-2 DOMAIN OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE JRNL TITL 3 FROM A GROUP A STREPTOCOCCAL SURFACE PROTEIN. JRNL REF J.MOL.BIOL. V. 308 705 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11350170 JRNL DOI 10.1006/JMBI.2001.4646 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHANG,I.MOCHALKIN,S.G.MCCANCE,B.CHENG,A.TULINSKY, REMARK 1 AUTH 2 F.J.CASTELLINO REMARK 1 TITL STRUCTURE AND LIGAND BINDING DETERMINANTS OF THE RECOMBINANT REMARK 1 TITL 2 KRINGLE 5 DOMAIN OF HUMAN PLASMINOGEN. REMARK 1 REF BIOCHEMISTRY V. 37 3258 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI972284E REMARK 1 REFERENCE 2 REMARK 1 AUTH T.P.WU,K.PADMANABHAN,A.TULINSKY,A.M.MULICHAK REMARK 1 TITL THE REFINED STRUCTURE OF THE EPSILON-AMINOCAPROIC ACID REMARK 1 TITL 2 COMPLEX OF HUMAN PLASMINOGEN KRINGLE 4. REMARK 1 REF BIOCHEMISTRY V. 30 10589 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.C.WISTEDT,H.KOTARSKY,D.MARTI,U.RINGDAHL,F.J.CASTELLINO, REMARK 1 AUTH 2 J.SCHALLER,U.SJOBRING REMARK 1 TITL KRINGLE 2 MEDIATES HIGH AFFINITY BINDING OF PLASMINOGEN TO REMARK 1 TITL 2 AN INTERNAL SEQUENCE IN STREPTOCOCCAL SURFACE PROTEIN PAM. REMARK 1 REF J.BIOL.CHEM. V. 273 24420 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.273.38.24420 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.L.NILSEN,M.PROROK,F.J.CASTELLINO REMARK 1 TITL ENHANCEMENT TROUGH MUTAGENESIS OF THE BINDING OF THE REMARK 1 TITL 2 ISOLATED KRINGLE 2 DOMAIN OF HUMAN PLASMINOGEN TO REMARK 1 TITL 3 OMEGA-AMINO ACID LIGANDS AND TO AN INTERNAL SEQUENCE OF A REMARK 1 TITL 4 STREPTOCOCCAL SURFACE PROTEIN. REMARK 1 REF J.BIOL.CHEM. V. 274 22380 1999 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.274.32.22380 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 8667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.039 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: USING K4 PG (PDB ENTRY 1PK4) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23%(W/V) PEG 3350, 0.1 M MES, 0.2 M REMARK 280 LI2SO4, 2MM CACL2, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.18600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.88950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.48250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.29650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.59300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 101.18600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 126.48250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.88950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.29650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSEMBLY IN THE ASSYMETRIC UNIT CONSTITUTES REMARK 300 A DIMER OF THE MONOMERIC COMPLEX OF A KRINGLE-2:VEK30 COMPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 ALA A 79 REMARK 465 ALA A 80 REMARK 465 PHE B 97 REMARK 465 SER B 98 REMARK 465 ALA B 179 REMARK 465 ALA B 180 REMARK 465 VAL C 301 REMARK 465 SER C 328 REMARK 465 GLU C 329 REMARK 465 TYR C 330 REMARK 465 VAL D 401 REMARK 465 SER D 428 REMARK 465 GLU D 429 REMARK 465 TYR D 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 554 O HOH C 554 12555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 424 CG GLU D 424 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 155 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 161 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 3 -80.18 -65.08 REMARK 500 MET A 17 -1.67 -58.46 REMARK 500 TYR A 35 48.76 -99.66 REMARK 500 LYS A 47 -119.86 24.74 REMARK 500 LYS B 147 -108.20 40.89 REMARK 500 ASN B 148 31.49 -142.17 REMARK 500 LEU C 304 52.01 -101.75 REMARK 500 GLU D 424 -79.31 -38.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 3 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1I5K A 0 80 UNP P00747 PLMN_HUMAN 183 262 DBREF 1I5K B 100 180 UNP P00747 PLMN_HUMAN 183 262 DBREF 1I5K C 301 330 UNP P49054 PAM_STRPY 85 113 DBREF 1I5K D 401 430 UNP P49054 PAM_STRPY 85 113 SEQADV 1I5K PHE A -3 UNP P00747 CLONING ARTIFACT SEQADV 1I5K SER A -2 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLU A -1 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLY A 4 UNP P00747 CYS 188 ENGINEERED MUTATION SEQADV 1I5K ASP A 56 UNP P00747 GLU 240 ENGINEERED MUTATION SEQADV 1I5K TYR A 72 UNP P00747 LEU 256 ENGINEERED MUTATION SEQADV 1I5K ALA A 79 UNP P00747 THR 263 CONFLICT SEQADV 1I5K ALA A 80 UNP P00747 THR 264 CONFLICT SEQADV 1I5K PHE B 97 UNP P00747 CLONING ARTIFACT SEQADV 1I5K SER B 98 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLU B 99 UNP P00747 CLONING ARTIFACT SEQADV 1I5K GLY B 104 UNP P00747 CYS 188 ENGINEERED MUTATION SEQADV 1I5K ASP B 156 UNP P00747 GLU 240 ENGINEERED MUTATION SEQADV 1I5K TYR B 172 UNP P00747 LEU 256 ENGINEERED MUTATION SEQADV 1I5K ALA B 179 UNP P00747 THR 263 CONFLICT SEQADV 1I5K ALA B 180 UNP P00747 THR 264 CONFLICT SEQADV 1I5K TYR C 330 UNP P49054 ARG 114 CONFLICT SEQADV 1I5K TYR D 430 UNP P49054 ARG 114 CONFLICT SEQRES 1 A 84 PHE SER GLU GLU CYS MET HIS GLY SER GLY GLU ASN TYR SEQRES 2 A 84 ASP GLY LYS ILE SER LYS THR MET SER GLY LEU GLU CYS SEQRES 3 A 84 GLN ALA TRP ASP SER GLN SER PRO HIS ALA HIS GLY TYR SEQRES 4 A 84 ILE PRO SER LYS PHE PRO ASN LYS ASN LEU LYS LYS ASN SEQRES 5 A 84 TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG PRO TRP CYS SEQRES 6 A 84 PHE THR THR ASP PRO ASN LYS ARG TRP GLU TYR CYS ASP SEQRES 7 A 84 ILE PRO ARG CYS ALA ALA SEQRES 1 B 84 PHE SER GLU GLU CYS MET HIS GLY SER GLY GLU ASN TYR SEQRES 2 B 84 ASP GLY LYS ILE SER LYS THR MET SER GLY LEU GLU CYS SEQRES 3 B 84 GLN ALA TRP ASP SER GLN SER PRO HIS ALA HIS GLY TYR SEQRES 4 B 84 ILE PRO SER LYS PHE PRO ASN LYS ASN LEU LYS LYS ASN SEQRES 5 B 84 TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG PRO TRP CYS SEQRES 6 B 84 PHE THR THR ASP PRO ASN LYS ARG TRP GLU TYR CYS ASP SEQRES 7 B 84 ILE PRO ARG CYS ALA ALA SEQRES 1 C 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 C 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 C 30 LYS SER GLU TYR SEQRES 1 D 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 D 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 D 30 LYS SER GLU TYR FORMUL 5 HOH *133(H2 O) HELIX 1 1 PHE A 40 ASN A 44 5 5 HELIX 2 2 ILE B 136 PHE B 140 5 5 HELIX 3 3 PHE B 140 ASN B 144 5 5 HELIX 4 4 THR C 305 LYS C 327 1 23 HELIX 5 5 THR D 405 LYS D 427 1 23 SHEET 1 A 3 CYS A 22 GLN A 23 0 SHEET 2 A 3 TRP A 60 THR A 63 -1 O PHE A 62 N GLN A 23 SHEET 3 A 3 TRP A 70 TYR A 72 -1 O GLU A 71 N CYS A 61 SHEET 1 B 2 TRP B 160 PHE B 162 0 SHEET 2 B 2 TRP B 170 TYR B 172 -1 N GLU B 171 O CYS B 161 SSBOND 1 CYS A 1 CYS A 78 1555 1555 2.02 SSBOND 2 CYS A 22 CYS A 61 1555 1555 2.02 SSBOND 3 CYS A 50 CYS A 73 1555 1555 2.05 SSBOND 4 CYS B 101 CYS B 178 1555 1555 2.02 SSBOND 5 CYS B 122 CYS B 161 1555 1555 2.04 SSBOND 6 CYS B 150 CYS B 173 1555 1555 2.04 CISPEP 1 SER A 29 PRO A 30 0 1.06 CISPEP 2 SER B 129 PRO B 130 0 0.96 CRYST1 91.980 91.980 151.779 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010872 0.006277 0.000000 0.00000 SCALE2 0.000000 0.012554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000 TER 647 CYS A 78 TER 1299 CYS B 178 TER 1520 LYS C 327 TER 1741 LYS D 427 HETATM 1742 O HOH A 500 30.906 38.745 -8.639 1.00 10.00 O HETATM 1743 O HOH A 501 24.123 34.671 12.455 1.00 23.76 O HETATM 1744 O HOH A 506 24.236 28.964 12.743 1.00 32.29 O HETATM 1745 O HOH A 509 43.626 32.490 8.854 1.00 37.02 O HETATM 1746 O HOH A 512 34.569 42.926 -10.172 1.00 52.69 O HETATM 1747 O HOH A 513 22.653 38.851 12.820 1.00 26.85 O HETATM 1748 O HOH A 515 24.449 48.355 17.725 0.60 36.28 O HETATM 1749 O HOH A 516 38.194 43.914 23.839 1.00 58.49 O HETATM 1750 O HOH A 518 23.811 43.900 1.143 1.00 32.12 O HETATM 1751 O HOH A 521 19.547 33.247 12.676 1.00 47.58 O HETATM 1752 O HOH A 528 33.320 43.540 -5.889 1.00 10.00 O HETATM 1753 O HOH A 529 43.365 44.213 19.549 0.74 45.29 O HETATM 1754 O HOH A 534 32.201 50.301 -0.817 0.80 29.87 O HETATM 1755 O HOH A 535 21.531 53.497 9.820 0.71 37.20 O HETATM 1756 O HOH A 542 43.087 50.551 14.774 0.81 49.72 O HETATM 1757 O HOH A 544 28.177 25.361 12.054 1.00 22.01 O HETATM 1758 O HOH A 547 36.236 45.993 -3.414 0.88 47.67 O HETATM 1759 O HOH A 549 22.268 41.034 -1.058 0.86 43.28 O HETATM 1760 O HOH A 550 38.356 39.475 25.846 0.71 53.88 O HETATM 1761 O HOH A 558 46.230 47.473 3.068 0.77 48.56 O HETATM 1762 O HOH A 561 30.104 52.673 9.094 0.86 48.35 O HETATM 1763 O HOH A 563 41.663 29.620 3.679 1.00 31.95 O HETATM 1764 O HOH A 568 48.601 32.544 1.013 1.00 39.33 O HETATM 1765 O HOH A 570 19.658 44.313 6.696 0.94 42.78 O HETATM 1766 O HOH A 572 27.319 33.341 20.843 1.00 35.77 O HETATM 1767 O HOH A 575 27.211 42.772 -3.777 0.93 50.18 O HETATM 1768 O HOH A 577 47.321 34.238 12.773 0.72 30.28 O HETATM 1769 O HOH A 580 26.046 46.493 20.004 0.69 22.90 O HETATM 1770 O HOH A 581 38.127 46.544 23.624 0.70 10.34 O HETATM 1771 O HOH A 582 41.982 37.536 20.366 0.68 44.23 O HETATM 1772 O HOH A 584 26.937 41.466 0.283 1.00 22.14 O HETATM 1773 O HOH A 586 36.095 49.598 21.564 0.97 43.21 O HETATM 1774 O HOH A 588 29.775 39.365 27.962 1.00 44.83 O HETATM 1775 O HOH A 591 32.613 48.041 24.371 0.74 51.68 O HETATM 1776 O HOH A 592 25.060 48.802 6.796 0.96 35.48 O HETATM 1777 O HOH A 595 49.164 36.999 15.502 0.91 66.92 O HETATM 1778 O HOH A 596 19.712 28.759 8.639 1.00 50.31 O HETATM 1779 O HOH A 599 42.135 49.110 6.081 0.93 64.11 O HETATM 1780 O HOH A 600 16.609 32.872 -0.722 0.89 28.51 O HETATM 1781 O HOH A 603 31.785 41.589 -9.850 0.74 23.61 O HETATM 1782 O HOH A 604 43.421 31.757 4.385 1.00 33.74 O HETATM 1783 O HOH A 605 30.491 50.585 13.331 1.00 48.15 O HETATM 1784 O HOH A 606 20.300 29.510 14.209 0.82 53.39 O HETATM 1785 O HOH A 609 24.926 43.170 25.296 0.50 10.00 O HETATM 1786 O HOH A 610 32.257 46.419 -2.391 0.48 28.36 O HETATM 1787 O HOH A 616 19.143 38.123 0.683 0.88 48.46 O HETATM 1788 O HOH A 626 32.612 37.702 -10.067 1.00 17.28 O HETATM 1789 O HOH A 627 29.760 29.757 18.316 0.95 26.99 O HETATM 1790 O HOH A 631 27.146 37.438 13.379 1.00 19.35 O HETATM 1791 O HOH A 632 25.732 36.104 10.993 1.00 26.44 O HETATM 1792 O HOH B 502 19.411 20.025 -9.630 0.73 30.24 O HETATM 1793 O HOH B 503 31.225 25.224 -14.644 1.00 30.96 O HETATM 1794 O HOH B 504 32.444 18.788 6.217 0.91 31.66 O HETATM 1795 O HOH B 508 43.261 5.003 -15.857 1.00 33.44 O HETATM 1796 O HOH B 520 41.271 16.014 -30.940 0.98 52.73 O HETATM 1797 O HOH B 524 21.816 19.307 -17.066 0.72 43.39 O HETATM 1798 O HOH B 527 56.535 16.752 4.466 1.00 24.06 O HETATM 1799 O HOH B 530 36.773 1.755 -5.481 0.94 39.23 O HETATM 1800 O HOH B 531 25.733 28.151 -21.961 1.00 26.33 O HETATM 1801 O HOH B 533 23.239 16.101 -16.783 0.74 54.49 O HETATM 1802 O HOH B 536 28.426 2.575 -13.262 1.00 50.53 O HETATM 1803 O HOH B 537 28.758 -1.076 -1.432 0.78 52.80 O HETATM 1804 O HOH B 539 35.293 17.395 7.463 1.00 30.13 O HETATM 1805 O HOH B 540 18.068 18.249 -4.342 1.00 35.82 O HETATM 1806 O HOH B 541 28.927 6.303 -26.853 1.00 26.78 O HETATM 1807 O HOH B 545 48.717 17.573 5.480 1.00 43.48 O HETATM 1808 O HOH B 551 45.822 12.726 -18.465 0.96 29.34 O HETATM 1809 O HOH B 553 50.211 15.153 -3.435 1.00 49.75 O HETATM 1810 O HOH B 555 51.178 5.808 -6.323 0.90 73.06 O HETATM 1811 O HOH B 560 37.714 5.758 -30.677 1.00 47.36 O HETATM 1812 O HOH B 562 31.480 -4.495 -4.024 0.97 47.09 O HETATM 1813 O HOH B 566 30.786 7.354 1.579 0.98 45.39 O HETATM 1814 O HOH B 567 43.668 4.381 -13.068 0.76 56.05 O HETATM 1815 O HOH B 573 30.283 18.654 -24.180 1.00 37.03 O HETATM 1816 O HOH B 579 35.516 12.900 -4.932 1.00 21.44 O HETATM 1817 O HOH B 583 34.101 0.208 -24.391 0.94 44.06 O HETATM 1818 O HOH B 587 26.299 20.879 -18.730 0.86 44.99 O HETATM 1819 O HOH B 589 31.123 12.637 -22.034 1.00 18.28 O HETATM 1820 O HOH B 597 44.043 6.775 -24.876 0.84 38.86 O HETATM 1821 O HOH B 598 37.021 7.808 0.888 0.72 40.74 O HETATM 1822 O HOH B 601 27.473 25.325 -21.581 1.00 18.51 O HETATM 1823 O HOH B 608 19.855 20.577 -13.562 0.83 45.22 O HETATM 1824 O HOH B 612 50.481 13.187 -6.135 0.68 40.97 O HETATM 1825 O HOH B 614 51.535 12.964 3.189 0.94 47.31 O HETATM 1826 O HOH B 615 26.590 21.348 -22.180 0.89 43.99 O HETATM 1827 O HOH B 618 18.567 11.076 -11.200 0.91 57.51 O HETATM 1828 O HOH B 619 41.203 3.479 -10.933 0.89 36.37 O HETATM 1829 O HOH B 628 47.650 8.861 -24.305 0.71 59.77 O HETATM 1830 O HOH B 629 31.416 6.479 -30.724 1.00 58.69 O HETATM 1831 O HOH C 514 36.806 25.982 -1.416 1.00 28.22 O HETATM 1832 O HOH C 522 31.443 24.913 -0.887 1.00 41.25 O HETATM 1833 O HOH C 523 17.113 24.437 6.328 1.00 54.52 O HETATM 1834 O HOH C 543 29.441 23.275 1.088 1.00 39.64 O HETATM 1835 O HOH C 546 33.744 27.138 1.901 1.00 24.12 O HETATM 1836 O HOH C 548 28.100 17.529 6.465 1.00 46.72 O HETATM 1837 O HOH C 554 38.330 21.092 12.772 1.00 29.01 O HETATM 1838 O HOH C 564 16.690 15.082 4.585 0.83 73.22 O HETATM 1839 O HOH C 569 46.584 30.195 6.485 1.00 36.98 O HETATM 1840 O HOH C 571 41.678 27.694 11.245 1.00 57.34 O HETATM 1841 O HOH C 574 50.785 20.980 -0.089 0.95 45.30 O HETATM 1842 O HOH C 593 24.996 23.474 12.781 1.00 31.22 O HETATM 1843 O HOH C 602 21.773 25.271 1.406 1.00 38.70 O HETATM 1844 O HOH C 607 52.008 21.055 -2.704 0.68 46.69 O HETATM 1845 O HOH C 613 54.733 26.773 7.002 0.89 41.88 O HETATM 1846 O HOH C 617 50.515 21.561 2.722 1.00 36.96 O HETATM 1847 O HOH C 622 38.252 20.244 8.617 0.72 22.37 O HETATM 1848 O HOH C 625 41.127 28.374 -1.232 0.94 56.32 O HETATM 1849 O HOH D 505 33.174 28.606 0.088 1.00 22.00 O HETATM 1850 O HOH D 507 36.764 26.703 -17.615 1.00 39.14 O HETATM 1851 O HOH D 510 45.642 20.513 -10.915 1.00 34.77 O HETATM 1852 O HOH D 511 32.529 32.312 -8.597 1.00 21.54 O HETATM 1853 O HOH D 517 55.968 26.405 -6.776 1.00 36.14 O HETATM 1854 O HOH D 519 43.443 31.549 -6.061 1.00 53.34 O HETATM 1855 O HOH D 525 20.013 26.587 -14.961 1.00 33.75 O HETATM 1856 O HOH D 526 28.076 31.204 -10.864 1.00 21.23 O HETATM 1857 O HOH D 532 58.100 28.455 -5.651 1.00 37.44 O HETATM 1858 O HOH D 538 15.518 26.287 -10.485 0.96 57.01 O HETATM 1859 O HOH D 552 48.825 29.336 -10.556 0.94 31.50 O HETATM 1860 O HOH D 556 18.507 21.452 -11.570 0.64 35.45 O HETATM 1861 O HOH D 557 50.928 17.749 -10.185 0.77 21.42 O HETATM 1862 O HOH D 559 40.996 30.393 -11.888 1.00 42.49 O HETATM 1863 O HOH D 565 37.207 28.215 -12.569 1.00 15.97 O HETATM 1864 O HOH D 576 26.812 32.982 -7.471 1.00 37.47 O HETATM 1865 O HOH D 578 29.904 32.898 -10.753 1.00 44.89 O HETATM 1866 O HOH D 585 29.042 27.008 -3.341 1.00 58.79 O HETATM 1867 O HOH D 590 28.867 24.953 -13.861 1.00 15.97 O HETATM 1868 O HOH D 594 48.927 19.232 -10.639 0.86 30.46 O HETATM 1869 O HOH D 611 14.617 33.738 -13.342 0.87 34.33 O HETATM 1870 O HOH D 620 12.873 27.809 -8.181 0.76 51.25 O HETATM 1871 O HOH D 621 51.582 28.347 -11.158 0.91 33.03 O HETATM 1872 O HOH D 623 49.855 24.895 -0.372 0.96 43.11 O HETATM 1873 O HOH D 624 35.036 23.578 -3.785 1.00 55.65 O HETATM 1874 O HOH D 630 16.530 25.823 -3.447 0.80 25.98 O CONECT 15 646 CONECT 168 497 CONECT 398 606 CONECT 497 168 CONECT 606 398 CONECT 646 15 CONECT 667 1298 CONECT 820 1149 CONECT 1050 1258 CONECT 1149 820 CONECT 1258 1050 CONECT 1298 667 MASTER 413 0 0 5 5 0 0 6 1870 4 12 20 END