HEADER NEUROPEPTIDE 09-MAR-01 1I7L TITLE CRYSTAL STRUCTURE ANALYSIS OF THE COMPLEX OF THE C DOMAIN OF SYNAPSIN TITLE 2 II FROM RAT WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPSIN II; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C DOMAIN (RESIDUES 113-421); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS SYNAPSE, PHOSPHORYLATION, SYNAPSIN IIA C-DOMAIN, ATP BINDING, KEYWDS 2 NEUROPEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR L.ESSER,M.PALNITKAR,J.DEISENHOFER REVDAT 3 07-FEB-24 1I7L 1 REMARK REVDAT 2 24-FEB-09 1I7L 1 VERSN REVDAT 1 01-JUL-03 1I7L 0 JRNL AUTH L.ESSER,M.PALNITKAR,J.DEISENHOFER JRNL TITL ATP BINDING INDEPENDENT OF METAL CATIONS IN SYNAPSIN II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 456569.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 28241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4214 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 381 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.22000 REMARK 3 B22 (A**2) : 2.22000 REMARK 3 B33 (A**2) : -4.43000 REMARK 3 B12 (A**2) : 2.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.400 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.750 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.790 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.520 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 33.34 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ATP.PARAM REMARK 3 PARAMETER FILE 5 : ATP_A.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ATP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000013004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.943 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: SYNCII MODEL BASED ON PDB ENTRY 1AUV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CHLORIDE, TRIS, PH REMARK 280 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.94550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.94550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.94550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.94550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.94550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.94550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 300 IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 170 REMARK 475 ASN A 171 REMARK 475 GLY A 172 REMARK 475 THR A 173 REMARK 475 SER A 333 REMARK 475 GLY A 334 REMARK 475 THR B 173 REMARK 475 THR B 340 REMARK 475 GLY B 341 REMARK 475 ARG B 421 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 168 CB CG1 CG2 REMARK 480 LEU A 169 CB CG CD1 CD2 REMARK 480 VAL A 175 CB CG1 CG2 REMARK 480 THR A 340 CB OG1 CG2 REMARK 480 SER A 342 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 371 CB CYS A 371 SG -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 126 74.10 -108.54 REMARK 500 LEU A 169 76.08 -68.13 REMARK 500 ASN A 171 -3.42 59.12 REMARK 500 LYS A 174 104.82 -162.87 REMARK 500 MET A 259 19.77 -69.15 REMARK 500 LYS A 337 88.28 -68.95 REMARK 500 ASP A 380 23.61 -70.46 REMARK 500 ASP A 390 -155.13 -116.91 REMARK 500 CYS A 391 -7.13 -56.95 REMARK 500 HIS B 124 5.13 -60.34 REMARK 500 PHE B 183 144.93 -172.34 REMARK 500 SER B 276 57.53 38.06 REMARK 500 ILE B 332 33.56 -144.20 REMARK 500 THR B 338 4.72 -61.23 REMARK 500 THR B 340 -159.67 65.83 REMARK 500 SER B 342 142.19 -173.54 REMARK 500 ASP B 390 -146.56 -109.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C DOMAIN OF SYNAPSIN I FROM BOVINE BRAIN REMARK 900 RELATED ID: 1AUX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE C DOMANIN OF SYNAPSIN I REMARK 900 FROM BOVINE BRAIN WITH ATP-GAMMA-S REMARK 900 RELATED ID: 1I7N RELATED DB: PDB REMARK 900 1I7N CONTAINS THE SAME PROTEIN, WITHOUT ATP DBREF 1I7L A 113 421 UNP Q63537 SYN2_RAT 113 421 DBREF 1I7L B 113 421 UNP Q63537 SYN2_RAT 113 421 SEQRES 1 A 309 LYS ALA LYS VAL LEU LEU VAL VAL ASP GLU PRO HIS THR SEQRES 2 A 309 ASP TRP ALA LYS CYS PHE ARG GLY LYS LYS ILE LEU GLY SEQRES 3 A 309 ASP TYR ASP ILE LYS VAL GLU GLN ALA GLU PHE SER GLU SEQRES 4 A 309 LEU ASN LEU VAL ALA HIS ALA ASP GLY THR TYR ALA VAL SEQRES 5 A 309 ASP MET GLN VAL LEU ARG ASN GLY THR LYS VAL VAL ARG SEQRES 6 A 309 SER PHE ARG PRO ASP PHE VAL LEU ILE ARG GLN HIS ALA SEQRES 7 A 309 PHE GLY MET ALA GLU ASN GLU ASP PHE ARG HIS LEU VAL SEQRES 8 A 309 ILE GLY MET GLN TYR ALA GLY LEU PRO SER ILE ASN SER SEQRES 9 A 309 LEU GLU SER ILE TYR ASN PHE CYS ASP LYS PRO TRP VAL SEQRES 10 A 309 PHE ALA GLN MET VAL ALA ILE PHE LYS THR LEU GLY GLY SEQRES 11 A 309 GLU LYS PHE PRO LEU ILE GLU GLN THR TYR TYR PRO ASN SEQRES 12 A 309 HIS ARG GLU MET LEU THR LEU PRO THR PHE PRO VAL VAL SEQRES 13 A 309 VAL LYS ILE GLY HIS ALA HIS SER GLY MET GLY LYS VAL SEQRES 14 A 309 LYS VAL GLU ASN HIS TYR ASP PHE GLN ASP ILE ALA SER SEQRES 15 A 309 VAL VAL ALA LEU THR GLN THR TYR ALA THR ALA GLU PRO SEQRES 16 A 309 PHE ILE ASP ALA LYS TYR ASP ILE ARG VAL GLN LYS ILE SEQRES 17 A 309 GLY ASN ASN TYR LYS ALA TYR MET ARG THR SER ILE SER SEQRES 18 A 309 GLY ASN TRP LYS THR ASN THR GLY SER ALA MET LEU GLU SEQRES 19 A 309 GLN ILE ALA MET SER ASP ARG TYR LYS LEU TRP VAL ASP SEQRES 20 A 309 ALA CYS SER GLU MET PHE GLY GLY LEU ASP ILE CYS ALA SEQRES 21 A 309 VAL LYS ALA VAL HIS GLY LYS ASP GLY LYS ASP TYR ILE SEQRES 22 A 309 PHE GLU VAL MET ASP CYS SER MET PRO LEU ILE GLY GLU SEQRES 23 A 309 HIS GLN VAL GLU ASP ARG GLN LEU ILE THR ASP LEU VAL SEQRES 24 A 309 ILE SER LYS MET ASN GLN LEU LEU SER ARG SEQRES 1 B 309 LYS ALA LYS VAL LEU LEU VAL VAL ASP GLU PRO HIS THR SEQRES 2 B 309 ASP TRP ALA LYS CYS PHE ARG GLY LYS LYS ILE LEU GLY SEQRES 3 B 309 ASP TYR ASP ILE LYS VAL GLU GLN ALA GLU PHE SER GLU SEQRES 4 B 309 LEU ASN LEU VAL ALA HIS ALA ASP GLY THR TYR ALA VAL SEQRES 5 B 309 ASP MET GLN VAL LEU ARG ASN GLY THR LYS VAL VAL ARG SEQRES 6 B 309 SER PHE ARG PRO ASP PHE VAL LEU ILE ARG GLN HIS ALA SEQRES 7 B 309 PHE GLY MET ALA GLU ASN GLU ASP PHE ARG HIS LEU VAL SEQRES 8 B 309 ILE GLY MET GLN TYR ALA GLY LEU PRO SER ILE ASN SER SEQRES 9 B 309 LEU GLU SER ILE TYR ASN PHE CYS ASP LYS PRO TRP VAL SEQRES 10 B 309 PHE ALA GLN MET VAL ALA ILE PHE LYS THR LEU GLY GLY SEQRES 11 B 309 GLU LYS PHE PRO LEU ILE GLU GLN THR TYR TYR PRO ASN SEQRES 12 B 309 HIS ARG GLU MET LEU THR LEU PRO THR PHE PRO VAL VAL SEQRES 13 B 309 VAL LYS ILE GLY HIS ALA HIS SER GLY MET GLY LYS VAL SEQRES 14 B 309 LYS VAL GLU ASN HIS TYR ASP PHE GLN ASP ILE ALA SER SEQRES 15 B 309 VAL VAL ALA LEU THR GLN THR TYR ALA THR ALA GLU PRO SEQRES 16 B 309 PHE ILE ASP ALA LYS TYR ASP ILE ARG VAL GLN LYS ILE SEQRES 17 B 309 GLY ASN ASN TYR LYS ALA TYR MET ARG THR SER ILE SER SEQRES 18 B 309 GLY ASN TRP LYS THR ASN THR GLY SER ALA MET LEU GLU SEQRES 19 B 309 GLN ILE ALA MET SER ASP ARG TYR LYS LEU TRP VAL ASP SEQRES 20 B 309 ALA CYS SER GLU MET PHE GLY GLY LEU ASP ILE CYS ALA SEQRES 21 B 309 VAL LYS ALA VAL HIS GLY LYS ASP GLY LYS ASP TYR ILE SEQRES 22 B 309 PHE GLU VAL MET ASP CYS SER MET PRO LEU ILE GLY GLU SEQRES 23 B 309 HIS GLN VAL GLU ASP ARG GLN LEU ILE THR ASP LEU VAL SEQRES 24 B 309 ILE SER LYS MET ASN GLN LEU LEU SER ARG HET ATP A 800 31 HET ATP B 801 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 HOH *195(H2 O) HELIX 1 1 ASP A 126 ARG A 132 1 7 HELIX 2 2 GLU A 148 SER A 150 5 3 HELIX 3 3 PHE A 199 ALA A 209 1 11 HELIX 4 4 SER A 216 PHE A 223 1 8 HELIX 5 5 ASP A 225 GLY A 241 1 17 HELIX 6 6 ASN A 255 THR A 261 5 7 HELIX 7 7 TYR A 287 GLN A 300 1 14 HELIX 8 8 SER A 351 SER A 362 1 12 HELIX 9 9 GLU A 363 GLY A 367 5 5 HELIX 10 10 HIS A 399 LEU A 419 1 21 HELIX 11 11 ASP B 126 PHE B 131 1 6 HELIX 12 12 GLU B 148 SER B 150 5 3 HELIX 13 13 PHE B 199 ALA B 209 1 11 HELIX 14 14 SER B 216 PHE B 223 1 8 HELIX 15 15 ASP B 225 GLY B 241 1 17 HELIX 16 16 ASN B 255 THR B 261 5 7 HELIX 17 17 ASN B 285 GLN B 300 1 16 HELIX 18 18 SER B 351 SER B 362 1 12 HELIX 19 19 GLU B 363 GLY B 367 5 5 HELIX 20 20 ILE B 396 GLU B 398 5 3 HELIX 21 21 HIS B 399 LEU B 419 1 21 SHEET 1 A 5 LYS A 135 ILE A 136 0 SHEET 2 A 5 TYR A 140 ALA A 147 -1 O TYR A 140 N ILE A 136 SHEET 3 A 5 ALA A 114 VAL A 120 1 N LYS A 115 O ASP A 141 SHEET 4 A 5 PHE A 183 ILE A 186 1 O PHE A 183 N LEU A 118 SHEET 5 A 5 SER A 213 ILE A 214 1 O ILE A 214 N ILE A 186 SHEET 1 B 7 VAL A 175 PHE A 179 0 SHEET 2 B 7 TYR A 162 VAL A 168 -1 N VAL A 164 O PHE A 179 SHEET 3 B 7 LEU A 152 HIS A 157 -1 O ASN A 153 N ASP A 165 SHEET 4 B 7 THR B 251 TYR B 253 -1 N TYR B 252 O ALA A 156 SHEET 5 B 7 ALA B 303 PRO B 307 -1 O ALA B 303 N TYR B 253 SHEET 6 B 7 VAL B 267 ILE B 271 -1 N VAL B 268 O GLU B 306 SHEET 7 B 7 LYS B 280 VAL B 283 -1 O VAL B 281 N VAL B 269 SHEET 1 C 7 LYS A 280 VAL A 283 0 SHEET 2 C 7 VAL A 267 ILE A 271 -1 N VAL A 267 O VAL A 283 SHEET 3 C 7 ALA A 303 PRO A 307 -1 N THR A 304 O LYS A 270 SHEET 4 C 7 THR A 251 TYR A 253 -1 N THR A 251 O ALA A 305 SHEET 5 C 7 LEU B 152 HIS B 157 -1 O ALA B 156 N TYR A 252 SHEET 6 C 7 TYR B 162 MET B 166 -1 N ALA B 163 O VAL B 155 SHEET 7 C 7 SER B 178 PHE B 179 -1 O PHE B 179 N VAL B 164 SHEET 1 D 5 ALA A 343 ILE A 348 0 SHEET 2 D 5 ASN A 323 SER A 331 -1 O ALA A 326 N ILE A 348 SHEET 3 D 5 ALA A 311 ILE A 320 -1 N ASP A 314 O ARG A 329 SHEET 4 D 5 ILE A 370 GLY A 378 -1 O CYS A 371 N LYS A 319 SHEET 5 D 5 ASP A 383 MET A 389 -1 N TYR A 384 O VAL A 376 SHEET 1 E 5 LYS B 135 ILE B 136 0 SHEET 2 E 5 TYR B 140 ALA B 147 -1 O TYR B 140 N ILE B 136 SHEET 3 E 5 ALA B 114 VAL B 120 1 O LYS B 115 N LYS B 143 SHEET 4 E 5 PHE B 183 ILE B 186 1 O PHE B 183 N LEU B 118 SHEET 5 E 5 SER B 213 ILE B 214 1 O ILE B 214 N ILE B 186 SHEET 1 F 2 VAL B 168 ARG B 170 0 SHEET 2 F 2 THR B 173 VAL B 175 -1 N THR B 173 O ARG B 170 SHEET 1 G 5 ALA B 343 ILE B 348 0 SHEET 2 G 5 ASN B 323 SER B 331 -1 O ALA B 326 N ILE B 348 SHEET 3 G 5 ALA B 311 ILE B 320 -1 N ASP B 314 O ARG B 329 SHEET 4 G 5 ILE B 370 GLY B 378 -1 O CYS B 371 N LYS B 319 SHEET 5 G 5 ASP B 383 MET B 389 -1 O TYR B 384 N VAL B 376 CISPEP 1 ILE A 214 ASN A 215 0 -5.71 CISPEP 2 PHE A 265 PRO A 266 0 -1.60 CISPEP 3 ILE B 214 ASN B 215 0 -1.85 CISPEP 4 PHE B 265 PRO B 266 0 -0.16 SITE 1 AC1 20 ILE A 248 LYS A 270 SER A 276 GLY A 277 SITE 2 AC1 20 LYS A 280 GLU A 306 PRO A 307 PHE A 308 SITE 3 AC1 20 ILE A 309 ASP A 314 ARG A 329 THR A 338 SITE 4 AC1 20 ASN A 339 LYS A 374 VAL A 376 PHE A 386 SITE 5 AC1 20 HOH A1085 HOH A1086 HOH A1105 HOH A1109 SITE 1 AC2 23 LYS B 226 ILE B 248 LYS B 270 HIS B 275 SITE 2 AC2 23 SER B 276 GLY B 277 LYS B 280 GLU B 306 SITE 3 AC2 23 PRO B 307 ILE B 309 ASP B 314 ARG B 329 SITE 4 AC2 23 TRP B 336 LYS B 337 THR B 338 ASN B 339 SITE 5 AC2 23 LYS B 374 PHE B 386 GLU B 387 HOH B1165 SITE 6 AC2 23 HOH B1175 HOH B1186 HOH B1193 CRYST1 121.275 121.275 165.891 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008246 0.004761 0.000000 0.00000 SCALE2 0.000000 0.009521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006028 0.00000