HEADER STRUCTURAL GENOMICS 14-MAR-01 1I8F TITLE THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: TITLE 2 IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SNRNP SM-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA BARREL-LIKE SMAP MONOMERS FORM 35-STRANDED BETA-SHEET IN THE KEYWDS 2 HEPTAMER, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.MURA,D.CASCIO,M.R.SAWAYA,D.EISENBERG REVDAT 6 07-FEB-24 1I8F 1 REMARK REVDAT 5 21-JUL-21 1I8F 1 REMARK REVDAT 4 13-JUL-11 1I8F 1 VERSN REVDAT 3 24-FEB-09 1I8F 1 VERSN REVDAT 2 01-APR-03 1I8F 1 JRNL REVDAT 1 16-MAY-01 1I8F 0 JRNL AUTH C.MURA,D.CASCIO,M.R.SAWAYA,D.S.EISENBERG JRNL TITL THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: JRNL TITL 2 IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 5532 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11331747 JRNL DOI 10.1073/PNAS.091102298 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 56641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.896 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.23 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.225 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EACH OF THE SEVEN SM MONOMERS PER A.U. REMARK 3 WERE REFINED INDEPENDENTLY IN CNS SINCE IMPOSITION OF RESTRAINTS REMARK 3 OR CONSTRAINTS HINDERED THE REFINEMENT. REMARK 4 REMARK 4 1I8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000013034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : COLLIMATING MIRROR OPTICS, REMARK 200 DOUBLE-SLIT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.480 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-4000, ACETATE, GLYCEROL, PH 8.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.86900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.86900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CONTENTS OF ONE ASYMMETRIC UNIT (I.E. A HEPTAMER) MOST REMARK 300 LIKELY CORRESPOND TO THE BIOLOGICALLY RELEVANT SPECIES FOR THIS REMARK 300 ORGANISM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 CYS A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 81 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 CYS B 8 REMARK 465 GLY B 81 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 ASP C 4 REMARK 465 ILE C 5 REMARK 465 SER C 6 REMARK 465 LYS C 7 REMARK 465 CYS C 8 REMARK 465 PHE C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 LEU C 12 REMARK 465 GLY C 13 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 ASP D 4 REMARK 465 ILE D 5 REMARK 465 SER D 6 REMARK 465 LYS D 7 REMARK 465 CYS D 8 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 SER E 3 REMARK 465 ASP E 4 REMARK 465 ILE E 5 REMARK 465 SER E 6 REMARK 465 LYS E 7 REMARK 465 CYS E 8 REMARK 465 PHE E 9 REMARK 465 ALA E 10 REMARK 465 GLY E 81 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 SER F 3 REMARK 465 ASP F 4 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASP G 4 REMARK 465 ILE G 5 REMARK 465 SER G 6 REMARK 465 LYS G 7 REMARK 465 CYS G 8 REMARK 465 PHE G 9 REMARK 465 ALA G 10 REMARK 465 THR G 11 REMARK 465 LEU G 12 REMARK 465 GLY G 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 10 CB REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 THR C 15 CG2 REMARK 470 LYS C 22 CD CE NZ REMARK 470 HIS C 44 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 PHE D 9 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA D 10 CB REMARK 470 GLU D 50 CG REMARK 470 THR E 11 OG1 CG2 REMARK 470 GLN E 17 CB CG CD OE1 NE2 REMARK 470 ASP E 18 CB CG OD1 OD2 REMARK 470 GLN E 43 CB CG CD OE1 NE2 REMARK 470 GLU E 71 CG CD OE1 OE2 REMARK 470 ILE F 5 CB CG1 CG2 CD1 REMARK 470 ARG F 39 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 43 CG CD OE1 NE2 REMARK 470 GLU F 50 CB CG CD OE1 OE2 REMARK 470 ASP G 18 CG OD1 OD2 REMARK 470 GLN G 43 CG CD OE1 NE2 REMARK 470 HIS G 44 CG ND1 CD2 CE1 NE2 REMARK 470 LYS G 62 CG CD CE NZ REMARK 470 GLU G 71 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG E 39 OE1 GLU E 50 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 12 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO D 80 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG G 69 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 11 -66.28 -106.24 REMARK 500 THR D 11 -103.64 -35.19 REMARK 500 PRO D 80 -14.64 -37.41 REMARK 500 SER F 6 -69.40 82.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B34 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SM D1D2 HETERODIMER REMARK 900 RELATED ID: 1D3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SM D3B HETERODIMER DBREF 1I8F A 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F B 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F C 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F D 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F E 2 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F F 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F G 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 SEQRES 1 A 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 A 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 A 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 A 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 A 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 A 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 A 81 VAL PRO GLY SEQRES 1 B 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 B 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 B 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 B 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 B 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 B 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 B 81 VAL PRO GLY SEQRES 1 C 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 C 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 C 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 C 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 C 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 C 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 C 81 VAL PRO GLY SEQRES 1 D 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 D 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 D 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 D 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 D 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 D 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 D 81 VAL PRO GLY SEQRES 1 E 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 E 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 E 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 E 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 E 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 E 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 E 81 VAL PRO GLY SEQRES 1 F 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 F 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 F 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 F 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 F 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 F 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 F 81 VAL PRO GLY SEQRES 1 G 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 G 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 G 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 G 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 G 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 G 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 G 81 VAL PRO GLY HET GOL A1001 6 HET GOL C1005 6 HET GOL D1004 6 HET GOL G1002 6 HET GOL G1003 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 8 GOL 5(C3 H8 O3) FORMUL 13 HOH *130(H2 O) HELIX 1 1 THR A 11 ASP A 18 1 8 HELIX 2 2 LEU B 12 ILE B 20 1 9 HELIX 3 3 ALA C 14 ILE C 20 1 7 HELIX 4 4 THR D 11 ILE D 20 1 10 HELIX 5 6 LEU F 12 SER F 19 1 8 HELIX 6 7 GLY G 13 SER G 19 1 7 SHEET 1 A36 GLN A 23 LEU A 28 0 SHEET 2 A36 HIS A 32 PHE A 41 -1 O ILE A 34 N VAL A 26 SHEET 3 A36 LEU A 47 ILE A 56 -1 O GLU A 50 N ILE A 37 SHEET 4 A36 ASN A 59 VAL A 68 -1 O GLY A 64 N ALA A 52 SHEET 5 A36 VAL G 73 PRO G 78 -1 O ILE G 76 N VAL A 67 SHEET 6 A36 GLN G 23 LEU G 28 -1 N LYS G 27 O LEU G 74 SHEET 7 A36 HIS G 32 PHE G 41 -1 O GLY G 36 N VAL G 24 SHEET 8 A36 LEU G 47 ILE G 56 -1 O GLU G 53 N ARG G 35 SHEET 9 A36 ASN G 59 VAL G 68 -1 O ARG G 63 N ALA G 52 SHEET 10 A36 VAL F 73 PRO F 78 -1 N ILE F 76 O VAL G 67 SHEET 11 A36 GLN F 23 LEU F 28 -1 N LYS F 27 O LEU F 74 SHEET 12 A36 HIS F 32 PHE F 41 -1 O GLY F 36 N VAL F 24 SHEET 13 A36 LEU F 47 ILE F 56 -1 O GLU F 50 N ILE F 37 SHEET 14 A36 ASN F 59 VAL F 68 -1 O TYR F 61 N GLU F 54 SHEET 15 A36 VAL E 73 PRO E 78 -1 N ILE E 76 O VAL F 67 SHEET 16 A36 GLN E 23 LEU E 28 -1 N LEU E 25 O SER E 77 SHEET 17 A36 HIS E 32 PHE E 41 -1 O ILE E 34 N VAL E 26 SHEET 18 A36 LEU E 47 ILE E 56 -1 O GLU E 50 N ILE E 37 SHEET 19 A36 ASN E 59 VAL E 68 -1 O ARG E 63 N ALA E 52 SHEET 20 A36 VAL D 73 PRO D 78 -1 N ILE D 76 O VAL E 67 SHEET 21 A36 GLN D 23 LEU D 28 -1 N LYS D 27 O LEU D 74 SHEET 22 A36 HIS D 32 PHE D 41 -1 O ILE D 34 N VAL D 26 SHEET 23 A36 LEU D 47 ILE D 56 -1 O ILE D 55 N GLU D 33 SHEET 24 A36 ASN D 59 VAL D 68 -1 O ARG D 63 N ALA D 52 SHEET 25 A36 VAL C 73 PRO C 78 -1 N ILE C 76 O VAL D 67 SHEET 26 A36 GLN C 23 LEU C 28 -1 N LEU C 25 O SER C 77 SHEET 27 A36 HIS C 32 PHE C 41 -1 O ILE C 34 N VAL C 26 SHEET 28 A36 LEU C 47 ILE C 56 -1 O GLU C 50 N ILE C 37 SHEET 29 A36 ASN C 59 VAL C 68 -1 O GLY C 64 N ALA C 52 SHEET 30 A36 VAL B 73 PRO B 78 -1 N ILE B 76 O VAL C 67 SHEET 31 A36 GLN B 23 LEU B 28 -1 N LEU B 25 O SER B 77 SHEET 32 A36 HIS B 32 PHE B 41 -1 O ILE B 34 N VAL B 26 SHEET 33 A36 LEU B 47 ILE B 56 -1 O GLU B 50 N ILE B 37 SHEET 34 A36 ASN B 59 VAL B 68 -1 O GLY B 64 N ALA B 52 SHEET 35 A36 VAL A 73 PRO A 78 -1 N ILE A 76 O VAL B 67 SHEET 36 A36 GLN A 23 LEU A 28 -1 N LEU A 25 O SER A 77 SITE 1 AC1 4 LYS A 27 GLU A 33 TYR B 61 ARG B 63 SITE 1 AC2 4 LEU F 12 ASN G 46 ARG G 69 GLU G 71 SITE 1 AC3 5 ILE A 56 TYR A 61 ARG A 63 LYS G 27 SITE 2 AC3 5 GLU G 33 SITE 1 AC4 4 LYS D 27 GLU D 33 TYR E 61 ARG E 63 SITE 1 AC5 8 LEU C 25 ARG C 35 SER C 77 PRO C 78 SITE 2 AC5 8 VAL C 79 PRO C 80 LYS D 62 ARG D 63 CRYST1 100.261 95.738 62.157 90.00 92.69 90.00 C 1 2 1 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009974 0.000000 0.000468 0.00000 SCALE2 0.000000 0.010445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016106 0.00000