HEADER IMMUNE SYSTEM 14-MAR-01 1I8I TITLE CRYSTAL STRUCTURE OF DSFV MR1 IN COMPLEX WITH THE PEPTIDE ANTIGEN OF TITLE 2 THE MUTANT EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII, AT ROOM TITLE 3 TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV LIGHT COMPND 3 CHAIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DSFV MR1 VARIABLE DOMAIN LIGHT CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV HEAVY COMPND 10 CHAIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: DSFV MR1 VARIABLE DOMAIN HEAVY CHAIN; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN; COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 19 SYNONYM: EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: M13KO7 HELPER PHAGE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: M13KO7 HELPER PHAGE; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 OTHER_DETAILS: THE PEPTIDE SEQUENCE IS FROM THE N-TERMINUS OF THE SOURCE 20 MUTANT EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII. KEYWDS ANTIBODY-PEPTIDE COMPLEX, IMMUNOGLOBULIN FOLD, PEPTIDE ANTIGEN, TYPE KEYWDS 2 II' BETA TURN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.C.LANDRY,A.C.KLIMOWICZ,S.J.LAVICTOIRE,S.BORISOVA,D.T.KOTTACHCHI, AUTHOR 2 I.A.LORIMER,S.V.EVANS REVDAT 4 27-OCT-21 1I8I 1 SEQADV REVDAT 3 24-FEB-09 1I8I 1 VERSN REVDAT 2 02-AUG-05 1I8I 1 DBREF SEQADV REVDAT 1 14-MAR-02 1I8I 0 JRNL AUTH R.C.LANDRY,A.C.KLIMOWICZ,S.J.LAVICTOIRE,S.BORISOVA, JRNL AUTH 2 D.T.KOTTACHCHI,I.A.LORIMER,S.V.EVANS JRNL TITL ANTIBODY RECOGNITION OF A CONFORMATIONAL EPITOPE IN A JRNL TITL 2 PEPTIDE ANTIGEN: FV-PEPTIDE COMPLEX OF AN ANTIBODY FRAGMENT JRNL TITL 3 SPECIFIC FOR THE MUTANT EGF RECEPTOR, EGFRVIII. JRNL REF J.MOL.BIOL. V. 308 883 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11352579 JRNL DOI 10.1006/JMBI.2001.4628 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 678 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 83 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000013037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SUPPER FOCUSSING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 6.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.46 REMARK 200 R MERGE FOR SHELL (I) : 0.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, MPD, PEG 10K, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.65000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 22.65000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 107 REMARK 465 GLY B 420 REMARK 465 ILE B 421 REMARK 465 GLU B 422 REMARK 465 GLY B 423 REMARK 465 ARG B 424 REMARK 465 GLU C 499 REMARK 465 GLU C 500 REMARK 465 LYS C 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 TRP A 35 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 35 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 36 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 86 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS A 103 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 TRP B 336 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP B 336 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 338 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 CYS B 344 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP B 347 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP B 347 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP B 347 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 372 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 THR B 397 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG B 398 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 398 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 SER B 402 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 THR B 403 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 TRP B 410 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP B 410 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 VAL B 416 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 50 129.86 -36.75 REMARK 500 GLU A 105 79.31 45.09 REMARK 500 ALA B 316 -179.67 -68.49 REMARK 500 ASP B 342 33.79 -95.56 REMARK 500 LYS B 343 3.69 48.44 REMARK 500 SER B 401 129.91 -173.50 REMARK 500 SER B 402 -31.32 21.23 REMARK 500 ASN C 504 84.00 26.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 505 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I8K RELATED DB: PDB REMARK 900 SAME PROTEIN, AT LIQUID NITROGEN TEMPERATURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 100 OF CHAIN A AND 344 OF CHAIN B HAVE REMARK 999 BEEN MUTATED TO CYS RESIDUES TO INTRODUCE A REMARK 999 DISULFIDE BRIDGE BETWEEN CHAINS A AND B. REMARK 999 THERE IS NO SEQUENCE DATABASE MATCH FOR CHAIN C REMARK 999 BECAUSE THE SEQUENCE OF EGFRVIII HAS NOT YET REMARK 999 BEEN DEPOSITED IN ANY DATABASE. THE DNA REMARK 999 SEQUENCE OF THE NORMAL EGF RECEPTOR HAS BEEN REMARK 999 DEPOSITED (NM_005228). DBREF 1I8I A 1 107 UNP Q8R028 Q8R028 136 242 DBREF 1I8I B 301 424 UNP P18529 HV58_MOUSE 1 124 DBREF 1I8I C 499 510 PDB 1I8I 1I8I 499 510 SEQADV 1I8I CYS A 100 UNP Q8R028 ASP 235 ENGINEERED MUTATION SEQADV 1I8I CYS B 344 UNP P18529 ARG 44 ENGINEERED MUTATION SEQADV 1I8I GLY B 420 UNP P18529 SER 120 CONFLICT SEQADV 1I8I ILE B 421 UNP P18529 SER 121 CONFLICT SEQADV 1I8I GLU B 422 UNP P18529 GLY 122 CONFLICT SEQADV 1I8I ARG B 424 UNP P18529 GLY 124 CONFLICT SEQRES 1 A 107 ASP ILE GLU LEU THR GLN SER PRO ALA SER LEU SER VAL SEQRES 2 A 107 ALA THR GLY GLU LYS VAL THR ILE ARG CYS MET THR SER SEQRES 3 A 107 THR ASP ILE ASP ASP ASP MET ASN TRP TYR GLN GLN LYS SEQRES 4 A 107 PRO GLY GLU PRO PRO LYS PHE LEU ILE SER GLU GLY ASN SEQRES 5 A 107 THR LEU ARG PRO GLY VAL PRO SER ARG PHE SER SER SER SEQRES 6 A 107 GLY THR GLY THR ASP PHE VAL PHE THR ILE GLU ASN THR SEQRES 7 A 107 LEU SER GLU ASP VAL GLY ASP TYR TYR CYS LEU GLN SER SEQRES 8 A 107 PHE ASN VAL PRO LEU THR PHE GLY CYS GLY THR LYS LEU SEQRES 9 A 107 GLU ILE LYS SEQRES 1 B 124 GLN VAL LYS LEU GLN GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 B 124 PRO GLY ALA SER LEU LYS LEU SER CYS VAL THR SER GLY SEQRES 3 B 124 PHE THR PHE ARG LYS PHE GLY MET SER TRP VAL ARG GLN SEQRES 4 B 124 THR SER ASP LYS CYS LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 B 124 THR GLY GLY TYR ASN THR TYR TYR SER ASP ASN VAL LYS SEQRES 6 B 124 GLY ARG PHE THR ILE SER ARG GLU ASN ALA LYS ASN THR SEQRES 7 B 124 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 B 124 ALA LEU TYR TYR CYS THR ARG GLY TYR SER SER THR SER SEQRES 9 B 124 TYR ALA MET ASP TYR TRP GLY GLN GLY THR THR VAL THR SEQRES 10 B 124 VAL SER GLY ILE GLU GLY ARG SEQRES 1 C 12 GLU GLU LYS LYS GLY ASN TYR VAL VAL THR ASP HIS FORMUL 4 HOH *85(H2 O) HELIX 1 1 LEU A 79 VAL A 83 5 5 HELIX 2 2 THR B 328 PHE B 332 5 5 HELIX 3 3 LYS B 387 THR B 391 5 5 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 THR A 25 -1 N ARG A 22 O SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 N PHE A 71 O CYS A 23 SHEET 4 A 4 PHE A 62 THR A 67 -1 O SER A 63 N THR A 74 SHEET 1 B 5 THR A 53 LEU A 54 0 SHEET 2 B 5 LYS A 45 SER A 49 -1 N SER A 49 O THR A 53 SHEET 3 B 5 MET A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 B 5 GLY A 84 GLN A 90 -1 O ASP A 85 N GLN A 38 SHEET 5 B 5 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 C 6 THR A 53 LEU A 54 0 SHEET 2 C 6 LYS A 45 SER A 49 -1 N SER A 49 O THR A 53 SHEET 3 C 6 MET A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 C 6 GLY A 84 GLN A 90 -1 O ASP A 85 N GLN A 38 SHEET 5 C 6 THR A 102 LEU A 104 -1 O THR A 102 N TYR A 86 SHEET 6 C 6 SER A 10 LEU A 11 1 N LEU A 11 O LYS A 103 SHEET 1 D 4 LYS B 303 SER B 307 0 SHEET 2 D 4 LEU B 318 SER B 325 -1 N SER B 321 O SER B 307 SHEET 3 D 4 THR B 378 MET B 383 -1 N LEU B 379 O CYS B 322 SHEET 4 D 4 PHE B 368 GLU B 373 -1 O THR B 369 N GLN B 382 SHEET 1 E 5 SER B 404 TRP B 410 0 SHEET 2 E 5 ALA B 392 SER B 401 -1 N ARG B 398 O TYR B 409 SHEET 3 E 5 MET B 334 GLN B 339 -1 O SER B 335 N THR B 397 SHEET 4 E 5 LEU B 345 ILE B 351 -1 N GLU B 346 O ARG B 338 SHEET 5 E 5 THR B 358 TYR B 360 -1 N TYR B 359 O SER B 350 SHEET 1 F 4 SER B 404 TRP B 410 0 SHEET 2 F 4 ALA B 392 SER B 401 -1 N ARG B 398 O TYR B 409 SHEET 3 F 4 THR B 414 VAL B 418 -1 O THR B 414 N TYR B 394 SHEET 4 F 4 GLY B 310 VAL B 312 1 O GLY B 310 N THR B 417 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.00 SSBOND 2 CYS A 100 CYS B 344 1555 1555 1.99 SSBOND 3 CYS B 322 CYS B 396 1555 1555 1.99 CISPEP 1 SER A 7 PRO A 8 0 -1.76 CISPEP 2 VAL A 94 PRO A 95 0 -3.90 CRYST1 111.600 45.300 110.400 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009058 0.00000