data_1I9V # _entry.id 1I9V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I9V pdb_00001i9v 10.2210/pdb1i9v/pdb NDB TR0004 ? ? RCSB RCSB013086 ? ? WWPDB D_1000013086 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I9V _pdbx_database_status.recvd_initial_deposition_date 2001-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mikkelsen, N.E.' 1 'Johansson, K.' 2 'Virtanen, A.' 3 'Kirsebom, L.A.' 4 # _citation.id primary _citation.title 'Aminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 8 _citation.page_first 510 _citation.page_last 514 _citation.year 2001 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11373618 _citation.pdbx_database_id_DOI 10.1038/88569 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mikkelsen, N.E.' 1 ? primary 'Johansson, K.' 2 ? primary 'Virtanen, A.' 3 ? primary 'Kirsebom, L.A.' 4 ? # _cell.entry_id 1I9V _cell.length_a 54.900 _cell.length_b 32.900 _cell.length_c 63.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.50 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I9V _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PHENYLALANINE TRANSFER RNA' 24757.838 1 ? ? ? ? 2 non-polymer syn NEOMYCIN 614.644 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAA(YG)AUCUGGAGGUCCUGUG(5MU)UCGAUCCACAGAAUUCGCA CCA ; _entity_poly.pdbx_seq_one_letter_code_can GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 U n 1 18 G n 1 19 G n 1 20 G n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 G n 1 27 C n 1 28 C n 1 29 A n 1 30 G n 1 31 A n 1 32 C n 1 33 U n 1 34 G n 1 35 A n 1 36 A n 1 37 YG n 1 38 A n 1 39 U n 1 40 C n 1 41 U n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 G n 1 47 U n 1 48 C n 1 49 C n 1 50 U n 1 51 G n 1 52 U n 1 53 G n 1 54 5MU n 1 55 U n 1 56 C n 1 57 G n 1 58 A n 1 59 U n 1 60 C n 1 61 C n 1 62 A n 1 63 C n 1 64 A n 1 65 G n 1 66 A n 1 67 A n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code M10263 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 176479 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1I9V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 176479 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1I9V YG A 37 ? GB 176479 G 37 'modified residue' 37 1 1 1I9V 5MU A 54 ? GB 176479 U 54 'modified residue' 54 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NMY non-polymer . NEOMYCIN 'MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN' 'C23 H46 N6 O13' 614.644 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 YG 'RNA linking' n WYBUTOSINE 'Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-OXO-METHYL ESTER' 'C21 H29 N6 O12 P' 588.462 # _exptl.entry_id 1I9V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.56 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MgCl, MPD, Cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 281K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl ? ? ? 1 2 1 MPD ? ? ? 1 3 1 Cacodylate ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 1999-03-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.104 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.104 # _reflns.entry_id 1I9V _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.6 _reflns.number_obs 6515 _reflns.number_all 6515 _reflns.percent_possible_obs 90.6 _reflns.pdbx_Rmerge_I_obs 0.0500000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.B_iso_Wilson_estimate 69.98 _reflns.pdbx_redundancy 1.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1I9V _refine.ls_number_reflns_obs 6515 _refine.ls_number_reflns_all 6515 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 90.8 _refine.ls_R_factor_obs 0.2297000 _refine.ls_R_factor_all 0.2297000 _refine.ls_R_factor_R_work 0.2280000 _refine.ls_R_factor_R_free 0.2750000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 304 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 48 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 6TNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values ;Parkinson, Vojtechovsky, Clowney, Brunger, Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996). ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1631 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1708 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.39 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.0108 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.65 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 75.9 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1I9V _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I9V _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'AMINO-ACID TRANSPORT, YEAST, PHE-TRNA, PHENYLALANINE, TRANSFER RNA, AMINOGLYCOSIDE, NEOMYCIN B, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 36 "O3'" ? ? ? 1_555 A YG 37 P ? ? A A 36 A YG 37 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A YG 37 "O3'" ? ? ? 1_555 A A 38 P ? ? A YG 37 A A 38 1_555 ? ? ? ? ? ? ? 1.661 ? ? covale3 covale both ? A G 53 "O3'" ? ? ? 1_555 A 5MU 54 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? A 5MU 54 "O3'" ? ? ? 1_555 A U 55 P ? ? A 5MU 54 A U 55 1_555 ? ? ? ? ? ? ? 1.536 ? ? metalc1 metalc ? ? A G 19 OP1 ? ? ? 1_555 D MG . MG ? ? A G 19 A MG 302 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc2 metalc ? ? A A 21 OP2 ? ? ? 1_555 C MG . MG ? ? A A 21 A MG 301 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc3 metalc ? ? F HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 127 A MG 302 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc4 metalc ? ? F HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 130 A MG 303 1_555 ? ? ? ? ? ? ? 2.020 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 22 N7 ? ? ? 1_555 A G 46 N1 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog40 hydrog ? ? A G 22 O6 ? ? ? 1_555 A G 46 N2 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog41 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 32 O2 ? ? ? 1_555 A A 38 N6 ? ? A C 32 A A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A 5MU 54 N3 ? ? ? 1_555 A A 58 N7 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog69 hydrog ? ? A 5MU 54 O2 ? ? ? 1_555 A A 58 N6 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NMY 200 ? 4 'BINDING SITE FOR RESIDUE NMY A 200' AC2 Software A MG 301 ? 2 'BINDING SITE FOR RESIDUE MG A 301' AC3 Software A MG 302 ? 2 'BINDING SITE FOR RESIDUE MG A 302' AC4 Software A MG 303 ? 2 'BINDING SITE FOR RESIDUE MG A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 20 ? G A 20 . ? 1_555 ? 2 AC1 4 A A 23 ? A A 23 . ? 1_555 ? 3 AC1 4 A A 44 ? A A 44 . ? 1_555 ? 4 AC1 4 G A 45 ? G A 45 . ? 1_555 ? 5 AC2 2 G A 20 ? G A 20 . ? 1_555 ? 6 AC2 2 A A 21 ? A A 21 . ? 1_555 ? 7 AC3 2 G A 19 ? G A 19 . ? 1_555 ? 8 AC3 2 HOH F . ? HOH A 127 . ? 1_555 ? 9 AC4 2 U A 12 ? U A 12 . ? 1_555 ? 10 AC4 2 HOH F . ? HOH A 130 . ? 1_555 ? # _database_PDB_matrix.entry_id 1I9V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1I9V _atom_sites.fract_transf_matrix[1][1] 0.018215 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000159 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030395 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 YG 37 37 37 YG YG A . n A 1 38 A 38 38 38 A A A . n A 1 39 U 39 39 39 U U A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 C 49 49 49 C C A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 5MU 54 54 54 5MU U A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n A 1 57 G 57 57 57 G G A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 A 62 62 62 A A A . n A 1 63 C 63 63 63 C C A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NMY 1 200 200 NMY NMY A . C 3 MG 1 301 301 MG MG2 A . D 3 MG 1 302 302 MG MG2 A . E 3 MG 1 303 303 MG MG2 A . F 4 HOH 1 101 101 HOH WAT A . F 4 HOH 2 102 102 HOH WAT A . F 4 HOH 3 103 103 HOH WAT A . F 4 HOH 4 104 104 HOH WAT A . F 4 HOH 5 105 105 HOH WAT A . F 4 HOH 6 106 106 HOH WAT A . F 4 HOH 7 107 107 HOH WAT A . F 4 HOH 8 108 108 HOH WAT A . F 4 HOH 9 109 109 HOH WAT A . F 4 HOH 10 110 110 HOH WAT A . F 4 HOH 11 111 111 HOH WAT A . F 4 HOH 12 112 112 HOH WAT A . F 4 HOH 13 113 113 HOH WAT A . F 4 HOH 14 114 114 HOH WAT A . F 4 HOH 15 115 115 HOH WAT A . F 4 HOH 16 116 116 HOH WAT A . F 4 HOH 17 117 117 HOH WAT A . F 4 HOH 18 118 118 HOH WAT A . F 4 HOH 19 119 119 HOH WAT A . F 4 HOH 20 120 120 HOH WAT A . F 4 HOH 21 121 121 HOH WAT A . F 4 HOH 22 122 122 HOH WAT A . F 4 HOH 23 123 123 HOH WAT A . F 4 HOH 24 124 124 HOH WAT A . F 4 HOH 25 125 125 HOH WAT A . F 4 HOH 26 126 126 HOH WAT A . F 4 HOH 27 127 127 HOH WAT A . F 4 HOH 28 128 128 HOH WAT A . F 4 HOH 29 129 129 HOH WAT A . F 4 HOH 30 130 130 HOH WAT A . F 4 HOH 31 131 131 HOH WAT A . F 4 HOH 32 132 132 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A YG 37 A YG 37 ? G WYBUTOSINE 2 A 5MU 54 A 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id G _pdbx_struct_conn_angle.ptnr1_label_seq_id 19 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id G _pdbx_struct_conn_angle.ptnr1_auth_seq_id 19 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 302 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id F _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 127 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 133.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-06-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2022-12-21 6 'Structure model' 1 5 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 5 'Structure model' '_struct_ref_seq_dif.details' 16 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 1.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A U 6 ? ? P A U 7 ? ? OP2 A U 7 ? ? 120.95 110.50 10.45 1.10 Y 2 1 "O3'" A U 12 ? ? P A C 13 ? ? OP1 A C 13 ? ? 120.94 110.50 10.44 1.10 Y 3 1 "C3'" A A 38 ? ? "O3'" A A 38 ? ? P A U 39 ? ? 130.95 119.70 11.25 1.20 Y 4 1 "O4'" A U 39 ? ? "C4'" A U 39 ? ? "C3'" A U 39 ? ? 83.61 104.00 -20.39 1.00 N 5 1 "C5'" A U 39 ? ? "C4'" A U 39 ? ? "C3'" A U 39 ? ? 127.16 116.00 11.16 1.60 N 6 1 "C1'" A U 39 ? ? "O4'" A U 39 ? ? "C4'" A U 39 ? ? 98.72 109.70 -10.98 0.70 N 7 1 "C2'" A U 39 ? ? "C3'" A U 39 ? ? "O3'" A U 39 ? ? 137.34 113.70 23.64 1.60 N 8 1 "C4'" A U 39 ? ? "C3'" A U 39 ? ? "C2'" A U 39 ? ? 89.70 102.60 -12.90 1.00 N 9 1 "C3'" A U 39 ? ? "C2'" A U 39 ? ? "C1'" A U 39 ? ? 94.91 101.30 -6.39 0.70 N 10 1 "C1'" A U 39 ? ? "C2'" A U 39 ? ? "O2'" A U 39 ? ? 129.25 110.60 18.65 3.00 N 11 1 "C2'" A U 55 ? ? "C3'" A U 55 ? ? "O3'" A U 55 ? ? 126.23 113.70 12.53 1.60 N 12 1 "C3'" A U 55 ? ? "C2'" A U 55 ? ? "C1'" A U 55 ? ? 106.97 101.50 5.47 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 6 ? ? 0.060 'SIDE CHAIN' 2 1 U A 7 ? ? 0.058 'SIDE CHAIN' 3 1 C A 11 ? ? 0.074 'SIDE CHAIN' 4 1 U A 12 ? ? 0.067 'SIDE CHAIN' 5 1 U A 16 ? ? 0.119 'SIDE CHAIN' 6 1 U A 17 ? ? 0.070 'SIDE CHAIN' 7 1 G A 19 ? ? 0.131 'SIDE CHAIN' 8 1 A A 36 ? ? 0.056 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A NMY 200 ? 'WRONG HAND' . 2 1 C3 ? A NMY 200 ? 'WRONG HAND' . 3 1 C7 ? A NMY 200 ? 'WRONG HAND' . 4 1 C12 ? A NMY 200 ? 'WRONG HAND' . 5 1 C11 ? A NMY 200 ? 'WRONG HAND' . 6 1 C10 ? A NMY 200 ? 'WRONG HAND' . 7 1 C9 ? A NMY 200 ? 'WRONG HAND' . 8 1 C14 ? A NMY 200 ? 'WRONG HAND' . 9 1 C20 ? A NMY 200 ? 'WRONG HAND' . 10 1 C19 ? A NMY 200 ? 'WRONG HAND' . 11 1 C18 ? A NMY 200 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 39 ? N1 ? A U 39 N1 2 1 Y 1 A U 39 ? C2 ? A U 39 C2 3 1 Y 1 A U 39 ? O2 ? A U 39 O2 4 1 Y 1 A U 39 ? N3 ? A U 39 N3 5 1 Y 1 A U 39 ? C4 ? A U 39 C4 6 1 Y 1 A U 39 ? O4 ? A U 39 O4 7 1 Y 1 A U 39 ? C5 ? A U 39 C5 8 1 Y 1 A U 39 ? C6 ? A U 39 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5MU N1 N N N 1 5MU C2 C N N 2 5MU N3 N N N 3 5MU C4 C N N 4 5MU C5 C N N 5 5MU C5M C N N 6 5MU C6 C N N 7 5MU O2 O N N 8 5MU O4 O N N 9 5MU "C1'" C N R 10 5MU "C2'" C N R 11 5MU "O2'" O N N 12 5MU "C3'" C N S 13 5MU "C4'" C N R 14 5MU "O3'" O N N 15 5MU "O4'" O N N 16 5MU "C5'" C N N 17 5MU "O5'" O N N 18 5MU P P N N 19 5MU OP1 O N N 20 5MU OP2 O N N 21 5MU OP3 O N N 22 5MU HN3 H N N 23 5MU H71 H N N 24 5MU H72 H N N 25 5MU H73 H N N 26 5MU H6 H N N 27 5MU "H1'" H N N 28 5MU "H2'" H N N 29 5MU "HO2'" H N N 30 5MU "H3'" H N N 31 5MU "H4'" H N N 32 5MU "HO3'" H N N 33 5MU "H5'" H N N 34 5MU "H5''" H N N 35 5MU HOP2 H N N 36 5MU HOP3 H N N 37 A OP3 O N N 38 A P P N N 39 A OP1 O N N 40 A OP2 O N N 41 A "O5'" O N N 42 A "C5'" C N N 43 A "C4'" C N R 44 A "O4'" O N N 45 A "C3'" C N S 46 A "O3'" O N N 47 A "C2'" C N R 48 A "O2'" O N N 49 A "C1'" C N R 50 A N9 N Y N 51 A C8 C Y N 52 A N7 N Y N 53 A C5 C Y N 54 A C6 C Y N 55 A N6 N N N 56 A N1 N Y N 57 A C2 C Y N 58 A N3 N Y N 59 A C4 C Y N 60 A HOP3 H N N 61 A HOP2 H N N 62 A "H5'" H N N 63 A "H5''" H N N 64 A "H4'" H N N 65 A "H3'" H N N 66 A "HO3'" H N N 67 A "H2'" H N N 68 A "HO2'" H N N 69 A "H1'" H N N 70 A H8 H N N 71 A H61 H N N 72 A H62 H N N 73 A H2 H N N 74 C OP3 O N N 75 C P P N N 76 C OP1 O N N 77 C OP2 O N N 78 C "O5'" O N N 79 C "C5'" C N N 80 C "C4'" C N R 81 C "O4'" O N N 82 C "C3'" C N S 83 C "O3'" O N N 84 C "C2'" C N R 85 C "O2'" O N N 86 C "C1'" C N R 87 C N1 N N N 88 C C2 C N N 89 C O2 O N N 90 C N3 N N N 91 C C4 C N N 92 C N4 N N N 93 C C5 C N N 94 C C6 C N N 95 C HOP3 H N N 96 C HOP2 H N N 97 C "H5'" H N N 98 C "H5''" H N N 99 C "H4'" H N N 100 C "H3'" H N N 101 C "HO3'" H N N 102 C "H2'" H N N 103 C "HO2'" H N N 104 C "H1'" H N N 105 C H41 H N N 106 C H42 H N N 107 C H5 H N N 108 C H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 MG MG MG N N 151 NMY C1 C N R 152 NMY O1 O N N 153 NMY C2 C N R 154 NMY N2 N N N 155 NMY C3 C N R 156 NMY O3 O N N 157 NMY C4 C N S 158 NMY O4 O N N 159 NMY C5 C N R 160 NMY O5 O N N 161 NMY C6 C N N 162 NMY C7 C N R 163 NMY N7 N N N 164 NMY C12 C N S 165 NMY C11 C N R 166 NMY O11 O N N 167 NMY C10 C N R 168 NMY C9 C N S 169 NMY N9 N N N 170 NMY C8 C N N 171 NMY C13 C N S 172 NMY C14 C N R 173 NMY C15 C N S 174 NMY C16 C N R 175 NMY O16 O N N 176 NMY C17 C N N 177 NMY C21 C N S 178 NMY C20 C N R 179 NMY C19 C N R 180 NMY C18 C N R 181 NMY O18 O N N 182 NMY C22 C N S 183 NMY O22 O N N 184 NMY C23 C N N 185 NMY N6 N N N 186 NMY O14 O N N 187 NMY O20 O N N 188 NMY O21 O N N 189 NMY O17 O N N 190 NMY O12 O N N 191 NMY N19 N N N 192 NMY N23 N N N 193 NMY H1 H N N 194 NMY H2 H N N 195 NMY HN21 H N N 196 NMY HN22 H N N 197 NMY H3 H N N 198 NMY HO3 H N N 199 NMY H4 H N N 200 NMY HO4 H N N 201 NMY H5 H N N 202 NMY H61 H N N 203 NMY H62 H N N 204 NMY H7 H N N 205 NMY H71 H N N 206 NMY H72 H N N 207 NMY H12 H N N 208 NMY H11 H N N 209 NMY H10 H N N 210 NMY H9 H N N 211 NMY H91 H N N 212 NMY H92 H N N 213 NMY H81 H N N 214 NMY H82 H N N 215 NMY H13 H N N 216 NMY H14 H N N 217 NMY H15 H N N 218 NMY H16 H N N 219 NMY H171 H N N 220 NMY H172 H N N 221 NMY H21 H N N 222 NMY H20 H N N 223 NMY H19 H N N 224 NMY H18 H N N 225 NMY H22 H N N 226 NMY H231 H N N 227 NMY H232 H N N 228 NMY HN61 H N N 229 NMY HN62 H N N 230 NMY HO41 H N N 231 NMY HO22 H N N 232 NMY HO21 H N N 233 NMY H17 H N N 234 NMY HO12 H N N 235 NMY H191 H N N 236 NMY H192 H N N 237 NMY HN31 H N N 238 NMY HN32 H N N 239 U OP3 O N N 240 U P P N N 241 U OP1 O N N 242 U OP2 O N N 243 U "O5'" O N N 244 U "C5'" C N N 245 U "C4'" C N R 246 U "O4'" O N N 247 U "C3'" C N S 248 U "O3'" O N N 249 U "C2'" C N R 250 U "O2'" O N N 251 U "C1'" C N R 252 U N1 N N N 253 U C2 C N N 254 U O2 O N N 255 U N3 N N N 256 U C4 C N N 257 U O4 O N N 258 U C5 C N N 259 U C6 C N N 260 U HOP3 H N N 261 U HOP2 H N N 262 U "H5'" H N N 263 U "H5''" H N N 264 U "H4'" H N N 265 U "H3'" H N N 266 U "HO3'" H N N 267 U "H2'" H N N 268 U "HO2'" H N N 269 U "H1'" H N N 270 U H3 H N N 271 U H5 H N N 272 U H6 H N N 273 YG N1 N Y N 274 YG N2 N Y N 275 YG C2 C Y N 276 YG N3 N N N 277 YG C3 C N N 278 YG C4 C Y N 279 YG C5 C Y N 280 YG C6 C N N 281 YG O6 O N N 282 YG N7 N Y N 283 YG C8 C Y N 284 YG N9 N Y N 285 YG C10 C N N 286 YG C11 C Y N 287 YG C12 C Y N 288 YG C13 C N N 289 YG C14 C N N 290 YG C15 C N R 291 YG C16 C N N 292 YG O17 O N N 293 YG O18 O N N 294 YG C19 C N N 295 YG N20 N N N 296 YG C21 C N N 297 YG O22 O N N 298 YG O23 O N N 299 YG C24 C N N 300 YG "C1'" C N R 301 YG "C2'" C N R 302 YG "O2'" O N N 303 YG "C3'" C N S 304 YG "O3'" O N N 305 YG "C4'" C N R 306 YG "O4'" O N N 307 YG "C5'" C N N 308 YG "O5'" O N N 309 YG P P N N 310 YG OP1 O N N 311 YG OP2 O N N 312 YG OP3 O N N 313 YG H31 H N N 314 YG H32 H N N 315 YG H33 H N N 316 YG H8 H N N 317 YG H101 H N N 318 YG H102 H N N 319 YG H103 H N N 320 YG H131 H N N 321 YG H132 H N N 322 YG H141 H N N 323 YG H142 H N N 324 YG H15 H N N 325 YG H191 H N N 326 YG H192 H N N 327 YG H193 H N N 328 YG HN2 H N N 329 YG H241 H N N 330 YG H242 H N N 331 YG H243 H N N 332 YG "H1'" H N N 333 YG "H2'" H N N 334 YG "HO2'" H N N 335 YG "H3'" H N N 336 YG "HO3'" H N N 337 YG "H4'" H N N 338 YG "H5'" H N N 339 YG "H5''" H N N 340 YG HOP2 H N N 341 YG HOP3 H N N 342 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5MU N1 C2 sing N N 1 5MU N1 C6 sing N N 2 5MU N1 "C1'" sing N N 3 5MU C2 N3 sing N N 4 5MU C2 O2 doub N N 5 5MU N3 C4 sing N N 6 5MU N3 HN3 sing N N 7 5MU C4 C5 sing N N 8 5MU C4 O4 doub N N 9 5MU C5 C5M sing N N 10 5MU C5 C6 doub N N 11 5MU C5M H71 sing N N 12 5MU C5M H72 sing N N 13 5MU C5M H73 sing N N 14 5MU C6 H6 sing N N 15 5MU "C1'" "C2'" sing N N 16 5MU "C1'" "O4'" sing N N 17 5MU "C1'" "H1'" sing N N 18 5MU "C2'" "O2'" sing N N 19 5MU "C2'" "C3'" sing N N 20 5MU "C2'" "H2'" sing N N 21 5MU "O2'" "HO2'" sing N N 22 5MU "C3'" "C4'" sing N N 23 5MU "C3'" "O3'" sing N N 24 5MU "C3'" "H3'" sing N N 25 5MU "C4'" "O4'" sing N N 26 5MU "C4'" "C5'" sing N N 27 5MU "C4'" "H4'" sing N N 28 5MU "O3'" "HO3'" sing N N 29 5MU "C5'" "O5'" sing N N 30 5MU "C5'" "H5'" sing N N 31 5MU "C5'" "H5''" sing N N 32 5MU "O5'" P sing N N 33 5MU P OP1 doub N N 34 5MU P OP2 sing N N 35 5MU P OP3 sing N N 36 5MU OP2 HOP2 sing N N 37 5MU OP3 HOP3 sing N N 38 A OP3 P sing N N 39 A OP3 HOP3 sing N N 40 A P OP1 doub N N 41 A P OP2 sing N N 42 A P "O5'" sing N N 43 A OP2 HOP2 sing N N 44 A "O5'" "C5'" sing N N 45 A "C5'" "C4'" sing N N 46 A "C5'" "H5'" sing N N 47 A "C5'" "H5''" sing N N 48 A "C4'" "O4'" sing N N 49 A "C4'" "C3'" sing N N 50 A "C4'" "H4'" sing N N 51 A "O4'" "C1'" sing N N 52 A "C3'" "O3'" sing N N 53 A "C3'" "C2'" sing N N 54 A "C3'" "H3'" sing N N 55 A "O3'" "HO3'" sing N N 56 A "C2'" "O2'" sing N N 57 A "C2'" "C1'" sing N N 58 A "C2'" "H2'" sing N N 59 A "O2'" "HO2'" sing N N 60 A "C1'" N9 sing N N 61 A "C1'" "H1'" sing N N 62 A N9 C8 sing Y N 63 A N9 C4 sing Y N 64 A C8 N7 doub Y N 65 A C8 H8 sing N N 66 A N7 C5 sing Y N 67 A C5 C6 sing Y N 68 A C5 C4 doub Y N 69 A C6 N6 sing N N 70 A C6 N1 doub Y N 71 A N6 H61 sing N N 72 A N6 H62 sing N N 73 A N1 C2 sing Y N 74 A C2 N3 doub Y N 75 A C2 H2 sing N N 76 A N3 C4 sing Y N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 G OP3 P sing N N 114 G OP3 HOP3 sing N N 115 G P OP1 doub N N 116 G P OP2 sing N N 117 G P "O5'" sing N N 118 G OP2 HOP2 sing N N 119 G "O5'" "C5'" sing N N 120 G "C5'" "C4'" sing N N 121 G "C5'" "H5'" sing N N 122 G "C5'" "H5''" sing N N 123 G "C4'" "O4'" sing N N 124 G "C4'" "C3'" sing N N 125 G "C4'" "H4'" sing N N 126 G "O4'" "C1'" sing N N 127 G "C3'" "O3'" sing N N 128 G "C3'" "C2'" sing N N 129 G "C3'" "H3'" sing N N 130 G "O3'" "HO3'" sing N N 131 G "C2'" "O2'" sing N N 132 G "C2'" "C1'" sing N N 133 G "C2'" "H2'" sing N N 134 G "O2'" "HO2'" sing N N 135 G "C1'" N9 sing N N 136 G "C1'" "H1'" sing N N 137 G N9 C8 sing Y N 138 G N9 C4 sing Y N 139 G C8 N7 doub Y N 140 G C8 H8 sing N N 141 G N7 C5 sing Y N 142 G C5 C6 sing N N 143 G C5 C4 doub Y N 144 G C6 O6 doub N N 145 G C6 N1 sing N N 146 G N1 C2 sing N N 147 G N1 H1 sing N N 148 G C2 N2 sing N N 149 G C2 N3 doub N N 150 G N2 H21 sing N N 151 G N2 H22 sing N N 152 G N3 C4 sing N N 153 HOH O H1 sing N N 154 HOH O H2 sing N N 155 NMY C1 O5 sing N N 156 NMY C1 O1 sing N N 157 NMY C1 C2 sing N N 158 NMY C1 H1 sing N N 159 NMY O1 C10 sing N N 160 NMY C2 N2 sing N N 161 NMY C2 C3 sing N N 162 NMY C2 H2 sing N N 163 NMY N2 HN21 sing N N 164 NMY N2 HN22 sing N N 165 NMY C3 C4 sing N N 166 NMY C3 O3 sing N N 167 NMY C3 H3 sing N N 168 NMY O3 HO3 sing N N 169 NMY C4 C5 sing N N 170 NMY C4 O4 sing N N 171 NMY C4 H4 sing N N 172 NMY O4 HO4 sing N N 173 NMY C5 O5 sing N N 174 NMY C5 C6 sing N N 175 NMY C5 H5 sing N N 176 NMY C6 N6 sing N N 177 NMY C6 H61 sing N N 178 NMY C6 H62 sing N N 179 NMY C7 N7 sing N N 180 NMY C7 C12 sing N N 181 NMY C7 C8 sing N N 182 NMY C7 H7 sing N N 183 NMY N7 H71 sing N N 184 NMY N7 H72 sing N N 185 NMY C12 O12 sing N N 186 NMY C12 C11 sing N N 187 NMY C12 H12 sing N N 188 NMY C11 O11 sing N N 189 NMY C11 C10 sing N N 190 NMY C11 H11 sing N N 191 NMY O11 C13 sing N N 192 NMY C10 C9 sing N N 193 NMY C10 H10 sing N N 194 NMY C9 C8 sing N N 195 NMY C9 N9 sing N N 196 NMY C9 H9 sing N N 197 NMY N9 H91 sing N N 198 NMY N9 H92 sing N N 199 NMY C8 H81 sing N N 200 NMY C8 H82 sing N N 201 NMY C13 C14 sing N N 202 NMY C13 O16 sing N N 203 NMY C13 H13 sing N N 204 NMY C14 O14 sing N N 205 NMY C14 C15 sing N N 206 NMY C14 H14 sing N N 207 NMY C15 O18 sing N N 208 NMY C15 C16 sing N N 209 NMY C15 H15 sing N N 210 NMY C16 O16 sing N N 211 NMY C16 C17 sing N N 212 NMY C16 H16 sing N N 213 NMY C17 O17 sing N N 214 NMY C17 H171 sing N N 215 NMY C17 H172 sing N N 216 NMY C21 C20 sing N N 217 NMY C21 C22 sing N N 218 NMY C21 O21 sing N N 219 NMY C21 H21 sing N N 220 NMY C20 C19 sing N N 221 NMY C20 O20 sing N N 222 NMY C20 H20 sing N N 223 NMY C19 N23 sing N N 224 NMY C19 C18 sing N N 225 NMY C19 H19 sing N N 226 NMY C18 O22 sing N N 227 NMY C18 O18 sing N N 228 NMY C18 H18 sing N N 229 NMY C22 O22 sing N N 230 NMY C22 C23 sing N N 231 NMY C22 H22 sing N N 232 NMY C23 N19 sing N N 233 NMY C23 H231 sing N N 234 NMY C23 H232 sing N N 235 NMY N6 HN61 sing N N 236 NMY N6 HN62 sing N N 237 NMY O14 HO41 sing N N 238 NMY O20 HO22 sing N N 239 NMY O21 HO21 sing N N 240 NMY O17 H17 sing N N 241 NMY O12 HO12 sing N N 242 NMY N19 H191 sing N N 243 NMY N19 H192 sing N N 244 NMY N23 HN31 sing N N 245 NMY N23 HN32 sing N N 246 U OP3 P sing N N 247 U OP3 HOP3 sing N N 248 U P OP1 doub N N 249 U P OP2 sing N N 250 U P "O5'" sing N N 251 U OP2 HOP2 sing N N 252 U "O5'" "C5'" sing N N 253 U "C5'" "C4'" sing N N 254 U "C5'" "H5'" sing N N 255 U "C5'" "H5''" sing N N 256 U "C4'" "O4'" sing N N 257 U "C4'" "C3'" sing N N 258 U "C4'" "H4'" sing N N 259 U "O4'" "C1'" sing N N 260 U "C3'" "O3'" sing N N 261 U "C3'" "C2'" sing N N 262 U "C3'" "H3'" sing N N 263 U "O3'" "HO3'" sing N N 264 U "C2'" "O2'" sing N N 265 U "C2'" "C1'" sing N N 266 U "C2'" "H2'" sing N N 267 U "O2'" "HO2'" sing N N 268 U "C1'" N1 sing N N 269 U "C1'" "H1'" sing N N 270 U N1 C2 sing N N 271 U N1 C6 sing N N 272 U C2 O2 doub N N 273 U C2 N3 sing N N 274 U N3 C4 sing N N 275 U N3 H3 sing N N 276 U C4 O4 doub N N 277 U C4 C5 sing N N 278 U C5 C6 doub N N 279 U C5 H5 sing N N 280 U C6 H6 sing N N 281 YG N1 C2 sing Y N 282 YG N1 C6 sing N N 283 YG N1 C12 sing Y N 284 YG N2 C2 doub Y N 285 YG N2 C11 sing Y N 286 YG C2 N3 sing N N 287 YG N3 C3 sing N N 288 YG N3 C4 sing N N 289 YG C3 H31 sing N N 290 YG C3 H32 sing N N 291 YG C3 H33 sing N N 292 YG C4 C5 doub Y N 293 YG C4 N9 sing Y N 294 YG C5 C6 sing N N 295 YG C5 N7 sing Y N 296 YG C6 O6 doub N N 297 YG N7 C8 doub Y N 298 YG C8 N9 sing Y N 299 YG C8 H8 sing N N 300 YG N9 "C1'" sing N N 301 YG C10 C11 sing N N 302 YG C10 H101 sing N N 303 YG C10 H102 sing N N 304 YG C10 H103 sing N N 305 YG C11 C12 doub Y N 306 YG C12 C13 sing N N 307 YG C13 C14 sing N N 308 YG C13 H131 sing N N 309 YG C13 H132 sing N N 310 YG C14 C15 sing N N 311 YG C14 H141 sing N N 312 YG C14 H142 sing N N 313 YG C15 C16 sing N N 314 YG C15 N20 sing N N 315 YG C15 H15 sing N N 316 YG C16 O17 doub N N 317 YG C16 O18 sing N N 318 YG O18 C19 sing N N 319 YG C19 H191 sing N N 320 YG C19 H192 sing N N 321 YG C19 H193 sing N N 322 YG N20 C21 sing N N 323 YG N20 HN2 sing N N 324 YG C21 O22 doub N N 325 YG C21 O23 sing N N 326 YG O23 C24 sing N N 327 YG C24 H241 sing N N 328 YG C24 H242 sing N N 329 YG C24 H243 sing N N 330 YG "C1'" "C2'" sing N N 331 YG "C1'" "O4'" sing N N 332 YG "C1'" "H1'" sing N N 333 YG "C2'" "O2'" sing N N 334 YG "C2'" "C3'" sing N N 335 YG "C2'" "H2'" sing N N 336 YG "O2'" "HO2'" sing N N 337 YG "C3'" "O3'" sing N N 338 YG "C3'" "C4'" sing N N 339 YG "C3'" "H3'" sing N N 340 YG "O3'" "HO3'" sing N N 341 YG "C4'" "O4'" sing N N 342 YG "C4'" "C5'" sing N N 343 YG "C4'" "H4'" sing N N 344 YG "C5'" "O5'" sing N N 345 YG "C5'" "H5'" sing N N 346 YG "C5'" "H5''" sing N N 347 YG "O5'" P sing N N 348 YG P OP1 doub N N 349 YG P OP2 sing N N 350 YG P OP3 sing N N 351 YG OP2 HOP2 sing N N 352 YG OP3 HOP3 sing N N 353 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1I9V 'double helix' 1I9V 'a-form double helix' 1I9V 'hairpin loop' 1I9V 'mismatched base pair' 1I9V 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.285 -0.231 -0.471 -11.529 -1.245 2.354 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 -0.114 -0.124 0.085 -0.470 -16.496 -7.101 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A C 70 1_555 1.026 -0.075 -0.117 -4.968 -11.638 -3.027 3 A_G3:C70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A U 69 1_555 -1.740 -0.668 0.354 13.636 -9.267 -4.531 4 A_G4:U69_A A 4 ? A 69 ? 28 1 1 A A 5 1_555 A U 68 1_555 -0.386 -0.250 -0.011 0.436 -16.753 -1.253 5 A_A5:U68_A A 5 ? A 68 ? 20 1 1 A U 6 1_555 A A 67 1_555 0.643 -0.393 0.317 -7.501 -19.504 4.606 6 A_U6:A67_A A 6 ? A 67 ? 20 1 1 A U 7 1_555 A A 66 1_555 0.445 -0.182 -0.229 -3.077 1.253 -3.523 7 A_U7:A66_A A 7 ? A 66 ? 20 1 1 A C 49 1_555 A G 65 1_555 -0.109 0.028 0.038 2.318 -7.381 0.154 8 A_C49:G65_A A 49 ? A 65 ? 19 1 1 A U 50 1_555 A A 64 1_555 -0.584 -0.099 0.011 2.487 -11.561 -2.417 9 A_U50:A64_A A 50 ? A 64 ? 20 1 1 A G 51 1_555 A C 63 1_555 -0.206 -0.396 -0.428 -6.947 -17.867 -0.396 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A U 52 1_555 A A 62 1_555 -0.220 -0.274 -0.097 3.966 -12.932 2.530 11 A_U52:A62_A A 52 ? A 62 ? 20 1 1 A G 53 1_555 A C 61 1_555 0.012 0.035 0.323 -2.388 -6.042 6.716 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 54 1_555 A A 58 1_555 4.095 -1.651 0.251 -3.514 6.199 -104.446 13 A_5MU54:A58_A A 54 ? A 58 ? 24 4 1 A G 15 1_555 A C 48 1_555 -0.064 3.838 0.071 0.889 1.174 154.361 14 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A U 8 1_555 A A 14 1_555 3.927 -1.941 0.926 -4.400 8.896 -103.112 15 A_U8:A14_A A 8 ? A 14 ? 24 4 1 A G 22 1_555 A C 13 1_555 -0.284 -0.105 0.107 -4.456 -0.650 -1.126 16 A_G22:C13_A A 22 ? A 13 ? 19 1 1 A A 23 1_555 A U 12 1_555 0.222 -0.151 -0.019 6.061 -14.462 -0.489 17 A_A23:U12_A A 23 ? A 12 ? 20 1 1 A G 24 1_555 A C 11 1_555 -0.022 -0.402 -0.082 0.493 -12.323 -0.293 18 A_G24:C11_A A 24 ? A 11 ? 19 1 1 A C 25 1_555 A G 10 1_555 0.591 -0.065 0.237 5.459 -10.520 0.939 19 A_C25:G10_A A 25 ? A 10 ? 19 1 1 A G 26 1_555 A A 44 1_555 -0.822 1.073 -0.365 26.379 -14.815 -20.299 20 A_G26:A44_A A 26 ? A 44 ? 8 ? 1 A C 27 1_555 A G 43 1_555 -0.255 -0.066 0.424 7.697 -12.497 3.794 21 A_C27:G43_A A 27 ? A 43 ? 19 1 1 A C 28 1_555 A G 42 1_555 -0.309 -0.160 0.124 5.178 -14.324 -1.328 22 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A A 29 1_555 A U 41 1_555 0.294 -0.363 -0.035 0.777 -3.890 4.309 23 A_A29:U41_A A 29 ? A 41 ? 20 1 1 A G 30 1_555 A C 40 1_555 0.138 -0.204 -1.283 -29.645 -25.756 -0.678 24 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A C 32 1_555 A A 38 1_555 7.383 -3.189 1.326 -9.119 11.304 2.136 25 A_C32:A38_A A 32 ? A 38 ? ? ? 1 A G 19 1_555 A C 56 1_555 0.029 0.042 0.152 -23.880 -20.385 2.028 26 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -0.784 -2.163 3.098 -2.904 -7.228 29.692 -2.614 0.890 3.572 -13.807 5.548 30.674 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A G 3 1_555 A C 70 1_555 0.012 -1.233 3.492 2.981 9.139 36.854 -3.082 0.369 3.101 14.162 -4.619 38.045 2 AA_C2G3:C70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 70 1_555 A G 4 1_555 A U 69 1_555 0.040 -2.138 2.497 -4.434 7.252 17.491 -8.611 -1.510 1.449 22.223 13.587 19.433 3 AA_G3G4:U69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A U 69 1_555 A A 5 1_555 A U 68 1_555 0.028 -1.596 3.512 1.100 7.251 36.507 -3.492 0.107 3.148 11.433 -1.734 37.212 4 AA_G4A5:U68U69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A A 5 1_555 A U 68 1_555 A U 6 1_555 A A 67 1_555 0.590 -1.619 3.429 -0.905 5.053 37.315 -3.173 -1.033 3.176 7.851 1.407 37.654 5 AA_A5U6:A67U68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A U 6 1_555 A A 67 1_555 A U 7 1_555 A A 66 1_555 -0.506 -1.577 2.948 5.707 16.824 32.711 -4.237 1.391 1.838 27.492 -9.326 37.108 6 AA_U6U7:A66A67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A U 7 1_555 A A 66 1_555 A C 49 1_555 A G 65 1_555 -0.153 -1.920 3.153 -1.328 3.682 33.493 -3.870 0.062 2.935 6.363 2.294 33.714 7 AA_U7C49:G65A66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A C 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -1.098 -1.967 3.186 -1.972 5.342 25.444 -5.715 1.935 2.797 11.939 4.408 26.063 8 AA_C49U50:A64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 50 1_555 A A 64 1_555 A G 51 1_555 A C 63 1_555 -0.099 -1.687 3.631 2.623 10.243 33.409 -4.405 0.574 2.984 17.287 -4.427 34.997 9 AA_U50G51:C63A64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 51 1_555 A C 63 1_555 A U 52 1_555 A A 62 1_555 0.744 -1.141 3.012 -2.402 1.795 29.544 -2.567 -1.908 2.871 3.508 4.695 29.692 10 AA_G51U52:A62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A U 52 1_555 A A 62 1_555 A G 53 1_555 A C 61 1_555 0.890 -1.891 3.335 -0.504 5.843 34.617 -3.987 -1.549 2.973 9.733 0.839 35.095 11 AA_U52G53:C61A62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A 5MU 54 1_555 A A 58 1_555 -2.601 -2.470 3.391 2.533 -1.693 89.041 -1.724 1.908 3.369 -1.207 -1.806 89.082 12 AA_G535MU54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A G 15 1_555 A C 48 1_555 A U 8 1_555 A A 14 1_555 4.005 -1.302 -3.097 144.527 90.258 154.624 -0.489 -2.263 -2.429 45.191 -72.363 177.893 13 AA_G15U8:A14C48_AA A 15 ? A 48 ? A 8 ? A 14 ? 1 A U 8 1_555 A A 14 1_555 A G 22 1_555 A C 13 1_555 2.282 -0.325 3.287 0.518 -7.930 57.631 0.092 -2.321 3.320 -8.183 -0.535 58.130 14 AA_U8G22:C13A14_AA A 8 ? A 14 ? A 22 ? A 13 ? 1 A G 22 1_555 A C 13 1_555 A A 23 1_555 A U 12 1_555 -1.605 -1.711 3.113 -1.997 2.467 28.604 -3.965 2.806 3.060 4.974 4.025 28.776 15 AA_G22A23:U12C13_AA A 22 ? A 13 ? A 23 ? A 12 ? 1 A A 23 1_555 A U 12 1_555 A G 24 1_555 A C 11 1_555 0.048 -1.030 3.313 -1.298 7.560 32.213 -3.056 -0.299 2.997 13.390 2.298 33.090 16 AA_A23G24:C11U12_AA A 23 ? A 12 ? A 24 ? A 11 ? 1 A G 24 1_555 A C 11 1_555 A C 25 1_555 A G 10 1_555 1.378 -1.549 3.060 -0.236 4.494 39.376 -2.763 -2.058 2.865 6.643 0.348 39.623 17 AA_G24C25:G10C11_AA A 24 ? A 11 ? A 25 ? A 10 ? 1 A C 25 1_555 A G 10 1_555 A G 26 1_555 A A 44 1_555 3.096 -2.713 3.090 -10.854 6.501 51.226 -3.400 -4.060 2.104 7.390 12.340 52.663 18 AA_C25G26:A44G10_AA A 25 ? A 10 ? A 26 ? A 44 ? 1 A G 26 1_555 A A 44 1_555 A C 27 1_555 A G 43 1_555 1.346 -2.014 3.577 -8.617 4.722 36.580 -3.720 -3.197 2.924 7.361 13.433 37.833 19 AA_G26C27:G43A44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A C 27 1_555 A G 43 1_555 A C 28 1_555 A G 42 1_555 -0.563 -1.740 3.204 3.326 5.071 38.119 -3.222 1.237 2.900 7.705 -5.054 38.581 20 AA_C27C28:G42G43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 28 1_555 A G 42 1_555 A A 29 1_555 A U 41 1_555 0.471 -1.779 3.270 -1.313 8.019 29.939 -4.763 -1.115 2.692 15.173 2.484 30.998 21 AA_C28A29:U41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A A 29 1_555 A U 41 1_555 A G 30 1_555 A C 40 1_555 -0.254 -2.089 4.122 9.164 14.553 31.881 -5.682 1.867 2.769 24.403 -15.366 36.117 22 AA_A29G30:C40U41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 30 1_555 A C 40 1_555 A C 32 1_555 A A 38 1_555 0.042 -1.659 6.084 -10.456 17.664 93.051 -1.708 -0.372 5.758 12.057 7.137 94.778 23 AA_G30C32:A38C40_AA A 30 ? A 40 ? A 32 ? A 38 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NEOMYCIN NMY 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6TNA _pdbx_initial_refinement_model.details 'PDB ENTRY 6TNA' #