HEADER METAL BINDING PROTEIN 29-MAR-01 1IC0 TITLE RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROSOCYANIN; COMPND 3 CHAIN: A, B, C, D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915 KEYWDS RED COPPER, CUPREDOXIN, BETA HAIRPIN, NITROSOCYANIN, NITROSOMONAS KEYWDS 2 EUROPAEA, CU-MAD, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.LIEBERMAN,D.M.ARCIERO,A.B.HOOPER,A.C.ROSENZWEIG REVDAT 4 07-FEB-24 1IC0 1 REMARK LINK REVDAT 3 31-JAN-18 1IC0 1 REMARK REVDAT 2 24-FEB-09 1IC0 1 VERSN REVDAT 1 06-JUN-01 1IC0 0 JRNL AUTH R.L.LIEBERMAN,D.M.ARCIERO,A.B.HOOPER,A.C.ROSENZWEIG JRNL TITL CRYSTAL STRUCTURE OF A NOVEL RED COPPER PROTEIN FROM JRNL TITL 2 NITROSOMONAS EUROPAEA. JRNL REF BIOCHEMISTRY V. 40 5674 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11341832 JRNL DOI 10.1021/BI0102611 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 564210.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 87277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 8539 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12340 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1362 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.30000 REMARK 3 B22 (A**2) : -3.20000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.590 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.750 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 57.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.41097,1.38035,1.37957,1.3495 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41643 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, JEFFAMINE M-600, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 23K, TEMPERATURE REMARK 280 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.60050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.35400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.60050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.35400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 112 REMARK 465 GLU B 1 REMARK 465 GLU C 1 REMARK 465 GLU D 1 REMARK 465 GLU E 1 REMARK 465 GLU F 1 REMARK 465 HIS F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU E 21 N GLY E 22 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN E 19 C VAL E 20 N -0.197 REMARK 500 GLU E 21 C GLY E 22 N -0.453 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU E 21 CA - C - N ANGL. DEV. = 25.9 DEGREES REMARK 500 GLU E 21 O - C - N ANGL. DEV. = -38.1 DEGREES REMARK 500 GLY E 22 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 66 -17.02 -47.10 REMARK 500 GLN A 70 94.69 -166.81 REMARK 500 ILE B 64 88.00 -150.99 REMARK 500 GLN B 70 94.32 -166.26 REMARK 500 ASN C 3 116.28 -178.23 REMARK 500 ASN D 3 -161.58 -168.48 REMARK 500 PRO F 57 -3.01 -58.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU E 21 -36.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 306 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE1 REMARK 620 2 CYS A 95 SG 115.3 REMARK 620 3 HIS A 98 ND1 94.5 100.4 REMARK 620 4 HIS A 103 ND1 92.9 101.9 150.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 304 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 60 OE1 REMARK 620 2 CYS B 95 SG 126.9 REMARK 620 3 HIS B 98 ND1 85.5 108.0 REMARK 620 4 HIS B 103 ND1 89.0 109.5 136.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 60 OE1 REMARK 620 2 CYS C 95 SG 116.7 REMARK 620 3 HIS C 98 ND1 96.9 101.7 REMARK 620 4 HIS C 103 ND1 92.2 99.8 149.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 60 OE1 REMARK 620 2 CYS D 95 SG 122.2 REMARK 620 3 HIS D 98 ND1 94.3 103.2 REMARK 620 4 HIS D 103 ND1 92.8 101.5 145.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU E 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 60 OE1 REMARK 620 2 CYS E 95 SG 120.5 REMARK 620 3 HIS E 98 ND1 91.9 102.0 REMARK 620 4 HIS E 103 ND1 89.2 104.7 148.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 305 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU F 60 OE1 REMARK 620 2 CYS F 95 SG 124.7 REMARK 620 3 HIS F 98 ND1 88.4 111.6 REMARK 620 4 HIS F 103 ND1 83.8 103.9 141.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IBY RELATED DB: PDB REMARK 900 RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA REMARK 900 RELATED ID: 1IBZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NOVEL RED COPPER PROTEIN FROM NITROSOMONAS REMARK 900 EUROPAEA DBREF 1IC0 A 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IC0 B 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IC0 C 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IC0 D 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IC0 E 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IC0 F 1 112 UNP Q820S6 Q820S6_NITEU 25 136 SEQRES 1 A 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 A 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 A 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 A 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 A 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 A 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 A 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 A 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 A 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 B 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 B 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 B 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 B 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 B 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 B 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 B 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 B 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 B 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 C 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 C 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 C 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 C 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 C 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 C 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 C 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 C 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 C 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 D 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 D 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 D 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 D 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 D 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 D 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 D 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 D 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 D 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 E 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 E 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 E 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 E 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 E 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 E 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 E 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 E 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 E 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 F 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 F 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 F 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 F 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 F 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 F 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 F 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 F 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 F 112 PRO GLY THR LEU ASN VAL VAL GLU HET CU A 306 1 HET CU B 304 1 HET CU C 303 1 HET CU D 301 1 HET CU E 302 1 HET CU F 305 1 HETNAM CU COPPER (II) ION FORMUL 7 CU 6(CU 2+) FORMUL 13 HOH *248(H2 O) HELIX 1 1 ASP A 65 GLY A 68 5 4 HELIX 2 2 ASP B 65 GLY B 68 5 4 HELIX 3 3 ASP C 65 GLY C 68 5 4 HELIX 4 4 ASP D 65 GLY D 68 5 4 HELIX 5 5 ASP E 65 GLY E 68 5 4 HELIX 6 6 ASP F 65 GLY F 68 5 4 SHEET 1 A 4 ILE A 28 GLU A 36 0 SHEET 2 A 4 PHE A 4 ILE A 15 -1 N VAL A 7 O GLU A 36 SHEET 3 A 4 ASP A 46 ASN A 54 1 O LYS A 49 N PHE A 4 SHEET 4 A 4 THR A 78 ALA A 85 -1 O LYS A 79 N VAL A 52 SHEET 1 B 4 VAL D 23 GLU D 36 0 SHEET 2 B 4 PHE D 4 VAL D 20 -1 N VAL D 7 O GLU D 36 SHEET 3 B 4 LEU A 18 VAL A 20 -1 N ASN A 19 O ASN D 19 SHEET 4 B 4 VAL A 23 VAL A 25 -1 O VAL A 23 N VAL A 20 SHEET 1 C 4 VAL D 23 GLU D 36 0 SHEET 2 C 4 PHE D 4 VAL D 20 -1 N VAL D 7 O GLU D 36 SHEET 3 C 4 ALA D 47 ASN D 54 1 O LYS D 49 N PHE D 4 SHEET 4 C 4 THR D 78 THR D 84 -1 O LYS D 79 N VAL D 52 SHEET 1 D 3 THR A 39 VAL A 42 0 SHEET 2 D 3 GLY A 106 VAL A 110 1 O THR A 107 N LEU A 40 SHEET 3 D 3 GLY A 89 ILE A 93 -1 O GLY A 89 N VAL A 110 SHEET 1 E 2 GLU A 60 ILE A 64 0 SHEET 2 E 2 VAL A 69 ILE A 73 -1 O VAL A 69 N ILE A 64 SHEET 1 F 4 VAL B 23 GLU B 36 0 SHEET 2 F 4 PHE B 4 VAL B 20 -1 O VAL B 7 N GLU B 36 SHEET 3 F 4 ALA B 47 ASN B 54 1 O LYS B 49 N PHE B 4 SHEET 4 F 4 THR B 78 THR B 84 -1 O LYS B 79 N VAL B 52 SHEET 1 G 3 THR B 39 LYS B 43 0 SHEET 2 G 3 GLY B 106 VAL B 111 1 O THR B 107 N LEU B 40 SHEET 3 G 3 GLY B 89 ILE B 93 -1 O GLY B 89 N VAL B 110 SHEET 1 H 2 GLU B 60 ILE B 64 0 SHEET 2 H 2 VAL B 69 ILE B 73 -1 O VAL B 69 N ILE B 64 SHEET 1 I 4 VAL C 23 GLU C 36 0 SHEET 2 I 4 PHE C 4 VAL C 20 -1 O VAL C 7 N GLU C 36 SHEET 3 I 4 ALA C 47 ASN C 54 1 O LYS C 49 N PHE C 4 SHEET 4 I 4 THR C 78 THR C 84 -1 O LYS C 79 N VAL C 52 SHEET 1 J 3 THR C 39 LYS C 43 0 SHEET 2 J 3 GLY C 106 VAL C 111 1 O THR C 107 N LEU C 40 SHEET 3 J 3 GLY C 89 ILE C 93 -1 N GLY C 89 O VAL C 110 SHEET 1 K 2 GLU C 60 ILE C 64 0 SHEET 2 K 2 VAL C 69 ILE C 73 -1 O VAL C 69 N ILE C 64 SHEET 1 L 3 THR D 39 LYS D 43 0 SHEET 2 L 3 GLY D 106 VAL D 111 1 O THR D 107 N LEU D 40 SHEET 3 L 3 GLY D 89 ILE D 93 -1 O GLY D 89 N VAL D 110 SHEET 1 M 2 GLU D 60 ILE D 64 0 SHEET 2 M 2 VAL D 69 ILE D 73 -1 N VAL D 69 O ILE D 64 SHEET 1 N 4 ILE E 28 GLU E 36 0 SHEET 2 N 4 PHE E 4 ILE E 15 -1 N VAL E 7 O GLU E 36 SHEET 3 N 4 ALA E 47 ASN E 54 1 O LYS E 49 N PHE E 4 SHEET 4 N 4 THR E 78 THR E 84 -1 O LYS E 79 N VAL E 52 SHEET 1 O 2 LEU E 18 VAL E 20 0 SHEET 2 O 2 VAL E 23 VAL E 25 -1 O VAL E 23 N VAL E 20 SHEET 1 P 3 THR E 39 LYS E 43 0 SHEET 2 P 3 GLY E 106 VAL E 111 1 O THR E 107 N LEU E 40 SHEET 3 P 3 GLY E 89 ILE E 93 -1 O GLY E 89 N VAL E 110 SHEET 1 Q 2 GLU E 60 ILE E 64 0 SHEET 2 Q 2 VAL E 69 ILE E 73 -1 N VAL E 69 O ILE E 64 SHEET 1 R 4 VAL F 23 GLU F 36 0 SHEET 2 R 4 PHE F 4 VAL F 20 -1 N VAL F 7 O GLU F 36 SHEET 3 R 4 ALA F 47 ASN F 54 1 O LYS F 49 N PHE F 4 SHEET 4 R 4 THR F 78 THR F 84 -1 O LYS F 79 N VAL F 52 SHEET 1 S 3 THR F 39 LYS F 43 0 SHEET 2 S 3 GLY F 106 VAL F 111 1 O THR F 107 N LEU F 40 SHEET 3 S 3 GLY F 89 ILE F 93 -1 O GLY F 89 N VAL F 110 SHEET 1 T 2 GLU F 60 ILE F 64 0 SHEET 2 T 2 VAL F 69 ILE F 73 -1 O VAL F 69 N ILE F 64 LINK OE1 GLU A 60 CU CU A 306 1555 1555 2.28 LINK SG CYS A 95 CU CU A 306 1555 1555 2.43 LINK ND1 HIS A 98 CU CU A 306 1555 1555 1.97 LINK ND1 HIS A 103 CU CU A 306 1555 1555 2.09 LINK OE1 GLU B 60 CU CU B 304 1555 1555 2.33 LINK SG CYS B 95 CU CU B 304 1555 1555 2.33 LINK ND1 HIS B 98 CU CU B 304 1555 1555 2.23 LINK ND1 HIS B 103 CU CU B 304 1555 1555 2.11 LINK OE1 GLU C 60 CU CU C 303 1555 1555 2.24 LINK SG CYS C 95 CU CU C 303 1555 1555 2.35 LINK ND1 HIS C 98 CU CU C 303 1555 1555 2.08 LINK ND1 HIS C 103 CU CU C 303 1555 1555 2.04 LINK OE1 GLU D 60 CU CU D 301 1555 1555 2.15 LINK SG CYS D 95 CU CU D 301 1555 1555 2.39 LINK ND1 HIS D 98 CU CU D 301 1555 1555 2.13 LINK ND1 HIS D 103 CU CU D 301 1555 1555 2.01 LINK OE1 GLU E 60 CU CU E 302 1555 1555 2.27 LINK SG CYS E 95 CU CU E 302 1555 1555 2.26 LINK ND1 HIS E 98 CU CU E 302 1555 1555 2.06 LINK ND1 HIS E 103 CU CU E 302 1555 1555 2.00 LINK OE1 GLU F 60 CU CU F 305 1555 1555 2.22 LINK SG CYS F 95 CU CU F 305 1555 1555 2.40 LINK ND1 HIS F 98 CU CU F 305 1555 1555 2.32 LINK ND1 HIS F 103 CU CU F 305 1555 1555 2.31 CISPEP 1 GLU A 36 PRO A 37 0 0.14 CISPEP 2 GLU B 36 PRO B 37 0 0.02 CISPEP 3 GLU C 36 PRO C 37 0 -0.10 CISPEP 4 GLU D 36 PRO D 37 0 0.00 CISPEP 5 GLU E 36 PRO E 37 0 0.10 CISPEP 6 GLU F 36 PRO F 37 0 0.03 SITE 1 AC1 4 GLU D 60 CYS D 95 HIS D 98 HIS D 103 SITE 1 AC2 4 GLU E 60 CYS E 95 HIS E 98 HIS E 103 SITE 1 AC3 4 GLU C 60 CYS C 95 HIS C 98 HIS C 103 SITE 1 AC4 4 GLU B 60 CYS B 95 HIS B 98 HIS B 103 SITE 1 AC5 4 GLU F 60 CYS F 95 HIS F 98 HIS F 103 SITE 1 AC6 4 GLU A 60 CYS A 95 HIS A 98 HIS A 103 CRYST1 90.903 92.708 97.201 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010288 0.00000