data_1IDX # _entry.id 1IDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IDX pdb_00001idx 10.2210/pdb1idx/pdb RCSB RCSB013191 ? ? WWPDB D_1000013191 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1II1 'Structural Basis for Poor Uracil Excision from Hairpin DNA: NMR Study' unspecified PDB 1QE7 'Solution structure of a uracil containing hairpin DNA.' unspecified PDB 1DGO 'Structural basis for Uracil DNA Glycosylase interaction with Uracil: NMR study' unspecified BMRB 4536 'Structural basis for Uracil DNA Glycosylase interaction with Uracil: NMR study' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IDX _pdbx_database_status.recvd_initial_deposition_date 2001-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ghosh, M.' 1 'Rumpal, N.' 2 'Varshney, U.' 3 'Chary, K.V.' 4 # _citation.id primary _citation.title 'Structural basis for poor uracil excision from hairpin DNA. An NMR study.' _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 269 _citation.page_first 1886 _citation.page_last 1894 _citation.year 2002 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11952790 _citation.pdbx_database_id_DOI 10.1046/j.1432-1033.2002.02837.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ghosh, M.' 1 ? primary 'Rumpal, N.' 2 ? primary 'Varshney, U.' 3 ? primary 'Chary, K.V.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*UP*TP*GP*GP*AP*TP*CP*CP*T)-3'" _entity.formula_weight 5483.537 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Uracil containing hairpin DNA' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DG)(DG)(DA)(DT)(DC)(DC)(DT)(DT)(DU)(DT)(DG)(DG)(DA)(DT)(DC)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AGGATCCTTUTGGATCCT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DT n 1 10 DU n 1 11 DT n 1 12 DG n 1 13 DG n 1 14 DA n 1 15 DT n 1 16 DC n 1 17 DC n 1 18 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Custom made by Ransom Hill Biosciences, Inc., Ramona CA (USA)' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1IDX _struct_ref.pdbx_db_accession 1IDX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1IDX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 18 _struct_ref_seq.pdbx_seq_align_end_ins_code B _struct_ref_seq.pdbx_db_accession 1IDX _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 E-COSY 3 2 2 '2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 305 1 7.0 ? atm K 2 295 1 7.0 ? atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2 mM oligo; no buffer; pH = 7.0; 305K; 99% D2O' '99% D2O' 2 '2 mM oligo; no buffer; pH = 7.0; 305K; 90% H2O + 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian UNITYPLUS 600 2 ? Bruker AMX 500 # _pdbx_nmr_refine.entry_id 1IDX _pdbx_nmr_refine.method 'Restrained molecular dynamics and Energy minimization' _pdbx_nmr_refine.details ;The structures are based on a total of 196 restraints, 122 are NOE-derived distance constraints, 64 dihedral angle restraints, 10 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1IDX _pdbx_nmr_details.text 'This structure was determined using 2D homonuclear techniques' # _pdbx_nmr_ensemble.entry_id 1IDX _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria ;structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1IDX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations,lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1 collection varian 1 Discover 97 'structure solution' MSI 2 VNMR 6.1 'data analysis' varian 3 UXNMR 3.0 collection Bruker 4 Felix 97 processing MSI 5 Felix 97 'data analysis' MSI 6 Discover 97 refinement MSI 7 # _exptl.entry_id 1IDX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1IDX _struct.title 'Structural Basis for Poor Excision from Hairpin DNA: NMR Study' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IDX _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Uracil, Hairpin DNA, Hairpin loop, Double helix, UDG-Uracil interaction, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A DT 18 N3 ? B A DA 1 A DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 18 O4 ? B A DA 1 A DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 17 N3 ? B A DG 2 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 17 O2 ? B A DG 2 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 17 N4 ? B A DG 2 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 16 N3 ? B A DG 3 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 16 O2 ? B A DG 3 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 16 N4 ? B A DG 3 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 15 N3 ? B A DA 4 A DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 15 O4 ? B A DA 4 A DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DA 14 N1 ? B A DT 5 A DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 14 N6 ? B A DT 5 A DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 13 N1 ? B A DC 6 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 13 O6 ? B A DC 6 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 13 N2 ? B A DC 6 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 12 N1 ? B A DC 7 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 12 O6 ? B A DC 7 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 12 N2 ? B A DC 7 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DT 11 O2 ? B A DT 8 A DT 2 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DT 11 N3 ? B A DT 8 A DT 2 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1IDX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1IDX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DU 10 1 1 DU U A B n A 1 11 DT 11 2 2 DT T A B n A 1 12 DG 12 3 3 DG G A B n A 1 13 DG 13 4 4 DG G A B n A 1 14 DA 14 5 5 DA A A B n A 1 15 DT 15 6 6 DT T A B n A 1 16 DC 16 7 7 DC C A B n A 1 17 DC 17 8 8 DC C A B n A 1 18 DT 18 9 9 DT T A B n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-08 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DU 1 B ? C6 A DU 1 B ? 1.477 1.375 0.102 0.009 N 2 2 N1 A DU 1 B ? C6 A DU 1 B ? 1.478 1.375 0.103 0.009 N 3 3 N1 A DU 1 B ? C6 A DU 1 B ? 1.478 1.375 0.103 0.009 N 4 4 N1 A DU 1 B ? C6 A DU 1 B ? 1.476 1.375 0.101 0.009 N 5 5 N1 A DU 1 B ? C6 A DU 1 B ? 1.477 1.375 0.102 0.009 N 6 6 N1 A DU 1 B ? C6 A DU 1 B ? 1.478 1.375 0.103 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.63 108.30 2.33 0.30 N 2 1 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.80 117.00 -3.20 0.50 N 3 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.24 117.70 3.54 0.50 N 4 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.61 118.60 -3.99 0.60 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.20 108.30 1.90 0.30 N 6 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.47 108.30 3.17 0.30 N 7 1 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.71 117.00 -3.29 0.50 N 8 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.10 117.70 3.40 0.50 N 9 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.82 118.60 -4.78 0.60 N 10 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.62 108.30 2.32 0.30 N 11 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.11 122.90 -3.79 0.60 N 12 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.94 108.30 4.64 0.30 N 13 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.18 108.30 1.88 0.30 N 14 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.55 105.90 -5.35 0.80 N 15 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.11 108.30 2.81 0.30 N 16 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.46 122.30 -4.84 0.60 N 17 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.33 122.90 -4.57 0.60 N 18 1 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.01 121.30 -5.29 0.50 N 19 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 123.45 127.20 -3.75 0.60 N 20 1 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.34 123.70 -5.36 0.60 N 21 1 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 131.04 120.40 10.64 1.50 N 22 1 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 110.93 108.30 2.63 0.30 N 23 1 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.58 114.90 5.68 0.60 N 24 1 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 116.22 122.20 -5.98 0.70 N 25 1 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.40 108.30 3.10 0.30 N 26 1 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 117.74 122.30 -4.56 0.60 N 27 1 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 118.58 122.90 -4.32 0.60 N 28 1 "O4'" A DG 3 B ? "C1'" A DG 3 B ? "C2'" A DG 3 B ? 100.95 105.90 -4.95 0.80 N 29 1 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.01 108.30 6.71 0.30 N 30 1 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 110.19 108.30 1.89 0.30 N 31 1 "O4'" A DA 5 B ? "C1'" A DA 5 B ? "C2'" A DA 5 B ? 100.84 105.90 -5.06 0.80 N 32 1 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.54 117.70 3.84 0.50 N 33 1 "O4'" A DT 6 B ? "C1'" A DT 6 B ? N1 A DT 6 B ? 111.36 108.30 3.06 0.30 N 34 1 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.35 122.30 -3.95 0.60 N 35 1 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 119.13 122.90 -3.77 0.60 N 36 1 "O4'" A DC 7 B ? "C1'" A DC 7 B ? N1 A DC 7 B ? 111.42 108.30 3.12 0.30 N 37 1 "O4'" A DC 8 B ? "C1'" A DC 8 B ? N1 A DC 8 B ? 110.13 108.30 1.83 0.30 N 38 1 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.65 122.30 -3.65 0.60 N 39 1 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 119.01 122.90 -3.89 0.60 N 40 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.24 108.30 1.94 0.30 N 41 2 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.86 117.00 -3.14 0.50 N 42 2 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.16 117.70 3.46 0.50 N 43 2 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.50 118.60 -4.10 0.60 N 44 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 101.08 105.90 -4.82 0.80 N 45 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.61 108.30 4.31 0.30 N 46 2 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.54 111.50 3.04 0.50 N 47 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 112.18 108.30 3.88 0.30 N 48 2 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.84 117.00 -3.16 0.50 N 49 2 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.43 117.70 3.73 0.50 N 50 2 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.66 118.60 -3.94 0.60 N 51 2 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.21 122.30 -4.09 0.60 N 52 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.10 122.90 -3.80 0.60 N 53 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.45 105.90 -5.45 0.80 N 54 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.55 108.30 3.25 0.30 N 55 2 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.60 122.30 -4.70 0.60 N 56 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.38 122.90 -4.52 0.60 N 57 2 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.12 121.30 -5.18 0.50 N 58 2 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.54 123.70 -5.16 0.60 N 59 2 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.68 122.30 -3.62 0.60 N 60 2 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 130.91 120.40 10.51 1.50 N 61 2 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 111.02 108.30 2.72 0.30 N 62 2 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.76 114.90 5.86 0.60 N 63 2 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 115.86 122.20 -6.34 0.70 N 64 2 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.40 108.30 3.10 0.30 N 65 2 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 118.20 122.30 -4.10 0.60 N 66 2 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 119.01 122.90 -3.89 0.60 N 67 2 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.32 108.30 7.02 0.30 N 68 2 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 110.29 108.30 1.99 0.30 N 69 2 "O4'" A DA 5 B ? "C1'" A DA 5 B ? "C2'" A DA 5 B ? 100.65 105.90 -5.25 0.80 N 70 2 "O4'" A DA 5 B ? "C1'" A DA 5 B ? N9 A DA 5 B ? 111.18 108.30 2.88 0.30 N 71 2 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.56 117.70 3.86 0.50 N 72 2 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.00 122.30 -4.30 0.60 N 73 2 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 119.06 122.90 -3.84 0.60 N 74 2 "O4'" A DC 7 B ? "C1'" A DC 7 B ? N1 A DC 7 B ? 112.60 108.30 4.30 0.30 N 75 2 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.54 122.30 -3.76 0.60 N 76 2 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 118.95 122.90 -3.95 0.60 N 77 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 100.50 105.90 -5.40 0.80 N 78 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 114.58 108.30 6.28 0.30 N 79 3 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.55 117.00 -3.45 0.50 N 80 3 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.12 117.70 3.42 0.50 N 81 3 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 113.08 118.60 -5.52 0.60 N 82 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.52 108.30 2.22 0.30 N 83 3 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 114.53 111.50 3.03 0.50 N 84 3 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.87 117.00 -3.13 0.50 N 85 3 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.22 117.70 3.52 0.50 N 86 3 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.19 118.60 -4.41 0.60 N 87 3 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.50 122.30 -3.80 0.60 N 88 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.13 122.90 -3.77 0.60 N 89 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.03 108.30 3.73 0.30 N 90 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.82 108.30 2.52 0.30 N 91 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.01 105.90 -5.89 0.80 N 92 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.04 108.30 3.74 0.30 N 93 3 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.43 122.30 -4.87 0.60 N 94 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.61 122.90 -4.29 0.60 N 95 3 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.26 121.30 -5.04 0.50 N 96 3 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 123.50 127.20 -3.70 0.60 N 97 3 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.26 123.70 -5.44 0.60 N 98 3 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 130.47 120.40 10.07 1.50 N 99 3 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 110.91 108.30 2.61 0.30 N 100 3 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.55 114.90 5.65 0.60 N 101 3 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 116.23 122.20 -5.97 0.70 N 102 3 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.14 108.30 2.84 0.30 N 103 3 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 117.90 122.30 -4.40 0.60 N 104 3 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 118.62 122.90 -4.28 0.60 N 105 3 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.76 108.30 7.46 0.30 N 106 3 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 112.89 108.30 4.59 0.30 N 107 3 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.28 117.70 3.58 0.50 N 108 3 "O4'" A DT 6 B ? "C1'" A DT 6 B ? N1 A DT 6 B ? 111.42 108.30 3.12 0.30 N 109 3 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.59 122.30 -3.71 0.60 N 110 3 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 118.87 122.90 -4.03 0.60 N 111 3 "O4'" A DT 9 B ? "C1'" A DT 9 B ? N1 A DT 9 B ? 110.18 108.30 1.88 0.30 N 112 3 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.56 122.30 -3.74 0.60 N 113 3 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 118.79 122.90 -4.11 0.60 N 114 4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.34 108.30 2.04 0.30 N 115 4 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.88 117.00 -3.12 0.50 N 116 4 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.15 117.70 3.45 0.50 N 117 4 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.69 118.60 -3.91 0.60 N 118 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.36 108.30 2.06 0.30 N 119 4 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.81 108.30 3.51 0.30 N 120 4 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.73 117.00 -3.27 0.50 N 121 4 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.07 117.70 3.37 0.50 N 122 4 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.06 118.60 -4.54 0.60 N 123 4 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.31 122.30 -3.99 0.60 N 124 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.10 122.90 -3.80 0.60 N 125 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.49 108.30 4.19 0.30 N 126 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.59 105.90 -5.31 0.80 N 127 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.39 108.30 3.09 0.30 N 128 4 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.49 122.30 -4.81 0.60 N 129 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.44 122.90 -4.46 0.60 N 130 4 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.13 121.30 -5.17 0.50 N 131 4 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.51 123.70 -5.19 0.60 N 132 4 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 130.86 120.40 10.46 1.50 N 133 4 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 111.68 108.30 3.38 0.30 N 134 4 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.46 114.90 5.56 0.60 N 135 4 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 116.46 122.20 -5.74 0.70 N 136 4 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.35 108.30 3.05 0.30 N 137 4 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 117.91 122.30 -4.39 0.60 N 138 4 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 118.59 122.90 -4.31 0.60 N 139 4 "O4'" A DG 3 B ? "C1'" A DG 3 B ? "C2'" A DG 3 B ? 100.66 105.90 -5.24 0.80 N 140 4 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.05 108.30 6.75 0.30 N 141 4 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 110.14 108.30 1.84 0.30 N 142 4 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.61 117.70 3.91 0.50 N 143 4 "O4'" A DT 6 B ? "C1'" A DT 6 B ? N1 A DT 6 B ? 112.12 108.30 3.82 0.30 N 144 4 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.33 122.30 -3.97 0.60 N 145 4 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 118.70 122.90 -4.20 0.60 N 146 4 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.60 122.30 -3.70 0.60 N 147 4 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 118.91 122.90 -3.99 0.60 N 148 5 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.63 108.30 2.33 0.30 N 149 5 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.80 117.00 -3.20 0.50 N 150 5 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.24 117.70 3.54 0.50 N 151 5 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.61 118.60 -3.99 0.60 N 152 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.20 108.30 1.90 0.30 N 153 5 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.47 108.30 3.17 0.30 N 154 5 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.71 117.00 -3.29 0.50 N 155 5 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.10 117.70 3.40 0.50 N 156 5 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.82 118.60 -4.78 0.60 N 157 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.62 108.30 2.32 0.30 N 158 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.11 122.90 -3.79 0.60 N 159 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.94 108.30 4.64 0.30 N 160 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.18 108.30 1.88 0.30 N 161 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.55 105.90 -5.35 0.80 N 162 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.11 108.30 2.81 0.30 N 163 5 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.46 122.30 -4.84 0.60 N 164 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.33 122.90 -4.57 0.60 N 165 5 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.01 121.30 -5.29 0.50 N 166 5 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 123.45 127.20 -3.75 0.60 N 167 5 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.34 123.70 -5.36 0.60 N 168 5 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 131.04 120.40 10.64 1.50 N 169 5 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 110.93 108.30 2.63 0.30 N 170 5 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.58 114.90 5.68 0.60 N 171 5 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 116.22 122.20 -5.98 0.70 N 172 5 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.40 108.30 3.10 0.30 N 173 5 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 117.74 122.30 -4.56 0.60 N 174 5 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 118.58 122.90 -4.32 0.60 N 175 5 "O4'" A DG 3 B ? "C1'" A DG 3 B ? "C2'" A DG 3 B ? 100.95 105.90 -4.95 0.80 N 176 5 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.01 108.30 6.71 0.30 N 177 5 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 110.19 108.30 1.89 0.30 N 178 5 "O4'" A DA 5 B ? "C1'" A DA 5 B ? "C2'" A DA 5 B ? 100.84 105.90 -5.06 0.80 N 179 5 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.54 117.70 3.84 0.50 N 180 5 "O4'" A DT 6 B ? "C1'" A DT 6 B ? N1 A DT 6 B ? 111.36 108.30 3.06 0.30 N 181 5 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.35 122.30 -3.95 0.60 N 182 5 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 119.13 122.90 -3.77 0.60 N 183 5 "O4'" A DC 7 B ? "C1'" A DC 7 B ? N1 A DC 7 B ? 111.42 108.30 3.12 0.30 N 184 5 "O4'" A DC 8 B ? "C1'" A DC 8 B ? N1 A DC 8 B ? 110.13 108.30 1.83 0.30 N 185 5 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.65 122.30 -3.65 0.60 N 186 5 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 119.01 122.90 -3.89 0.60 N 187 6 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.24 108.30 1.94 0.30 N 188 6 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.86 117.00 -3.14 0.50 N 189 6 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.16 117.70 3.46 0.50 N 190 6 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.50 118.60 -4.10 0.60 N 191 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 101.08 105.90 -4.82 0.80 N 192 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.61 108.30 4.31 0.30 N 193 6 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.54 111.50 3.04 0.50 N 194 6 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 112.18 108.30 3.88 0.30 N 195 6 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.84 117.00 -3.16 0.50 N 196 6 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.43 117.70 3.73 0.50 N 197 6 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.66 118.60 -3.94 0.60 N 198 6 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.21 122.30 -4.09 0.60 N 199 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.10 122.90 -3.80 0.60 N 200 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.45 105.90 -5.45 0.80 N 201 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.55 108.30 3.25 0.30 N 202 6 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.60 122.30 -4.70 0.60 N 203 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.38 122.90 -4.52 0.60 N 204 6 C6 A DT 9 ? ? N1 A DT 9 ? ? C2 A DT 9 ? ? 116.12 121.30 -5.18 0.50 N 205 6 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 118.54 123.70 -5.16 0.60 N 206 6 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.68 122.30 -3.62 0.60 N 207 6 C6 A DT 9 ? ? N1 A DT 9 ? ? "C1'" A DT 9 ? ? 130.91 120.40 10.51 1.50 N 208 6 "O4'" A DU 1 B ? "C1'" A DU 1 B ? N1 A DU 1 B ? 111.02 108.30 2.72 0.30 N 209 6 N1 A DU 1 B ? C2 A DU 1 B ? N3 A DU 1 B ? 120.76 114.90 5.86 0.60 N 210 6 N3 A DU 1 B ? C2 A DU 1 B ? O2 A DU 1 B ? 115.86 122.20 -6.34 0.70 N 211 6 "O4'" A DT 2 B ? "C1'" A DT 2 B ? N1 A DT 2 B ? 111.40 108.30 3.10 0.30 N 212 6 N3 A DT 2 B ? C2 A DT 2 B ? O2 A DT 2 B ? 118.20 122.30 -4.10 0.60 N 213 6 C6 A DT 2 B ? C5 A DT 2 B ? C7 A DT 2 B ? 119.01 122.90 -3.89 0.60 N 214 6 "O4'" A DG 3 B ? "C1'" A DG 3 B ? N9 A DG 3 B ? 115.32 108.30 7.02 0.30 N 215 6 "O4'" A DG 4 B ? "C1'" A DG 4 B ? N9 A DG 4 B ? 110.29 108.30 1.99 0.30 N 216 6 "O4'" A DA 5 B ? "C1'" A DA 5 B ? "C2'" A DA 5 B ? 100.65 105.90 -5.25 0.80 N 217 6 "O4'" A DA 5 B ? "C1'" A DA 5 B ? N9 A DA 5 B ? 111.18 108.30 2.88 0.30 N 218 6 C5 A DA 5 B ? C6 A DA 5 B ? N1 A DA 5 B ? 121.56 117.70 3.86 0.50 N 219 6 N3 A DT 6 B ? C2 A DT 6 B ? O2 A DT 6 B ? 118.00 122.30 -4.30 0.60 N 220 6 C6 A DT 6 B ? C5 A DT 6 B ? C7 A DT 6 B ? 119.06 122.90 -3.84 0.60 N 221 6 "O4'" A DC 7 B ? "C1'" A DC 7 B ? N1 A DC 7 B ? 112.60 108.30 4.30 0.30 N 222 6 N3 A DT 9 B ? C2 A DT 9 B ? O2 A DT 9 B ? 118.54 122.30 -3.76 0.60 N 223 6 C6 A DT 9 B ? C5 A DT 9 B ? C7 A DT 9 B ? 118.95 122.90 -3.95 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.082 'SIDE CHAIN' 2 1 DT A 8 ? ? 0.094 'SIDE CHAIN' 3 1 DT A 9 ? ? 0.420 'SIDE CHAIN' 4 1 DT A 2 B ? 0.073 'SIDE CHAIN' 5 1 DG A 3 B ? 0.062 'SIDE CHAIN' 6 2 DG A 2 ? ? 0.071 'SIDE CHAIN' 7 2 DT A 8 ? ? 0.086 'SIDE CHAIN' 8 2 DT A 9 ? ? 0.400 'SIDE CHAIN' 9 2 DT A 2 B ? 0.153 'SIDE CHAIN' 10 2 DG A 3 B ? 0.058 'SIDE CHAIN' 11 3 DA A 1 ? ? 0.061 'SIDE CHAIN' 12 3 DG A 2 ? ? 0.064 'SIDE CHAIN' 13 3 DT A 8 ? ? 0.080 'SIDE CHAIN' 14 3 DT A 9 ? ? 0.426 'SIDE CHAIN' 15 3 DT A 2 B ? 0.065 'SIDE CHAIN' 16 4 DG A 2 ? ? 0.076 'SIDE CHAIN' 17 4 DT A 8 ? ? 0.090 'SIDE CHAIN' 18 4 DT A 9 ? ? 0.406 'SIDE CHAIN' 19 4 DT A 2 B ? 0.076 'SIDE CHAIN' 20 4 DG A 3 B ? 0.065 'SIDE CHAIN' 21 4 DT A 6 B ? 0.081 'SIDE CHAIN' 22 5 DG A 2 ? ? 0.082 'SIDE CHAIN' 23 5 DT A 8 ? ? 0.094 'SIDE CHAIN' 24 5 DT A 9 ? ? 0.420 'SIDE CHAIN' 25 5 DT A 2 B ? 0.073 'SIDE CHAIN' 26 5 DG A 3 B ? 0.062 'SIDE CHAIN' 27 6 DG A 2 ? ? 0.071 'SIDE CHAIN' 28 6 DT A 8 ? ? 0.086 'SIDE CHAIN' 29 6 DT A 9 ? ? 0.400 'SIDE CHAIN' 30 6 DT A 2 B ? 0.153 'SIDE CHAIN' 31 6 DG A 3 B ? 0.058 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1IDX 'double helix' 1IDX 'b-form double helix' 1IDX 'hairpin loop' 1IDX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DT 18 1_555 0.024 -0.100 -0.201 -8.992 -16.415 0.917 1 A_DA1:DT9B_A A 1 ? A 9 B 20 1 1 A DG 2 1_555 A DC 17 1_555 -0.394 -0.172 0.091 -1.732 -1.320 -0.526 2 A_DG2:DC8B_A A 2 ? A 8 B 19 1 1 A DG 3 1_555 A DC 16 1_555 -0.471 -0.197 0.074 5.799 -6.145 -0.556 3 A_DG3:DC7B_A A 3 ? A 7 B 19 1 1 A DA 4 1_555 A DT 15 1_555 -0.035 -0.110 -0.218 -3.990 -15.668 4.570 4 A_DA4:DT6B_A A 4 ? A 6 B 20 1 1 A DT 5 1_555 A DA 14 1_555 0.034 -0.124 -0.249 -0.735 -11.333 -1.155 5 A_DT5:DA5B_A A 5 ? A 5 B 20 1 1 A DC 6 1_555 A DG 13 1_555 0.419 -0.180 0.189 7.208 3.385 0.711 6 A_DC6:DG4B_A A 6 ? A 4 B 19 1 1 A DC 7 1_555 A DG 12 1_555 0.558 -0.185 -0.808 26.964 -4.107 0.553 7 A_DC7:DG3B_A A 7 ? A 3 B 19 1 1 A DT 8 1_555 A DT 11 1_555 -2.457 -1.989 -0.750 24.964 53.017 -3.111 8 A_DT8:DT2B_A A 8 ? A 2 B 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 A DT 18 1_555 A DG 2 1_555 A DC 17 1_555 -0.004 -2.088 2.896 -1.728 5.725 29.434 -5.003 -0.286 2.451 11.123 3.358 30.022 1 AA_DA1DG2:DC8BDT9B_AA A 1 ? A 9 B A 2 ? A 8 B 1 A DG 2 1_555 A DC 17 1_555 A DG 3 1_555 A DC 16 1_555 0.687 -1.782 2.894 0.888 7.976 30.670 -4.472 -1.124 2.385 14.765 -1.644 31.678 2 AA_DG2DG3:DC7BDC8B_AA A 2 ? A 8 B A 3 ? A 7 B 1 A DG 3 1_555 A DC 16 1_555 A DA 4 1_555 A DT 15 1_555 0.421 -1.961 3.301 2.416 12.429 30.446 -5.374 -0.371 2.367 22.485 -4.370 32.916 3 AA_DG3DA4:DT6BDC7B_AA A 3 ? A 7 B A 4 ? A 6 B 1 A DA 4 1_555 A DT 15 1_555 A DT 5 1_555 A DA 14 1_555 -0.613 -1.801 3.128 0.623 2.152 26.386 -4.464 1.492 2.959 4.704 -1.363 26.479 4 AA_DA4DT5:DA5BDT6B_AA A 4 ? A 6 B A 5 ? A 5 B 1 A DT 5 1_555 A DA 14 1_555 A DC 6 1_555 A DG 13 1_555 -0.084 -2.055 3.022 -5.974 8.062 28.384 -5.354 -0.870 2.333 15.829 11.729 30.071 5 AA_DT5DC6:DG4BDA5B_AA A 5 ? A 5 B A 6 ? A 4 B 1 A DC 6 1_555 A DG 13 1_555 A DC 7 1_555 A DG 12 1_555 -0.444 -2.087 2.685 4.074 6.587 27.220 -5.398 1.605 2.046 13.650 -8.441 28.280 6 AA_DC6DC7:DG3BDG4B_AA A 6 ? A 4 B A 7 ? A 3 B 1 A DC 7 1_555 A DG 12 1_555 A DT 8 1_555 A DT 11 1_555 -0.638 -4.133 4.714 -21.740 -0.014 4.030 -10.770 -11.786 1.494 -0.052 79.624 22.106 7 AA_DC7DT8:DT2BDG3B_AA A 7 ? A 3 B A 8 ? A 2 B #