data_1IE8 # _entry.id 1IE8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1IE8 RCSB RCSB013200 WWPDB D_1000013200 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DB1 'Crystal Structure Of The Nuclear Receptor For Vitamin D Complexed To Vitamin D' unspecified PDB 1IE9 'Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to MC1288' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IE8 _pdbx_database_status.recvd_initial_deposition_date 2001-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tocchini-Valentini, G.' 1 'Rochel, N.' 2 'Wurtz, J.M.' 3 'Mitschler, A.' 4 'Moras, D.' 5 # _citation.id primary _citation.title 'Crystal structures of the vitamin D receptor complexed to superagonist 20-epi ligands.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 98 _citation.page_first 5491 _citation.page_last 5496 _citation.year 2001 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11344298 _citation.pdbx_database_id_DOI 10.1073/pnas.091018698 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tocchini-Valentini, G.' 1 primary 'Rochel, N.' 2 primary 'Wurtz, J.M.' 3 primary 'Mitschler, A.' 4 primary 'Moras, D.' 5 # _cell.entry_id 1IE8 _cell.length_a 44.49 _cell.length_b 51.87 _cell.length_c 131.39 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1IE8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VITAMIN D3 RECEPTOR' 29391.871 1 ? ? ? ? 2 non-polymer syn '5-(2-{1-[1-(4-ETHYL-4-HYDROXY-HEXYLOXY)-ETHYL]-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE}-ETHYLIDENE)-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' 460.689 1 ? ? ? ? 3 water nat water 18.015 214 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,25-DIHYDROXYVITAMIN D3 RECEPTOR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_seq_one_letter_code_can ;DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 LEU n 1 4 ARG n 1 5 PRO n 1 6 LYS n 1 7 LEU n 1 8 SER n 1 9 GLU n 1 10 GLU n 1 11 GLN n 1 12 GLN n 1 13 ARG n 1 14 ILE n 1 15 ILE n 1 16 ALA n 1 17 ILE n 1 18 LEU n 1 19 LEU n 1 20 ASP n 1 21 ALA n 1 22 HIS n 1 23 HIS n 1 24 LYS n 1 25 THR n 1 26 TYR n 1 27 ASP n 1 28 PRO n 1 29 THR n 1 30 TYR n 1 31 SER n 1 32 ASP n 1 33 PHE n 1 34 CYS n 1 35 GLN n 1 36 PHE n 1 37 ARG n 1 38 PRO n 1 39 PRO n 1 40 VAL n 1 41 ARG n 1 42 VAL n 1 43 ASN n 1 44 ASP n 1 45 GLY n 1 46 GLY n 1 47 GLY n 1 48 SER n 1 49 VAL n 1 50 THR n 1 51 LEU n 1 52 GLU n 1 53 LEU n 1 54 SER n 1 55 GLN n 1 56 LEU n 1 57 SER n 1 58 MET n 1 59 LEU n 1 60 PRO n 1 61 HIS n 1 62 LEU n 1 63 ALA n 1 64 ASP n 1 65 LEU n 1 66 VAL n 1 67 SER n 1 68 TYR n 1 69 SER n 1 70 ILE n 1 71 GLN n 1 72 LYS n 1 73 VAL n 1 74 ILE n 1 75 GLY n 1 76 PHE n 1 77 ALA n 1 78 LYS n 1 79 MET n 1 80 ILE n 1 81 PRO n 1 82 GLY n 1 83 PHE n 1 84 ARG n 1 85 ASP n 1 86 LEU n 1 87 THR n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 GLN n 1 92 ILE n 1 93 VAL n 1 94 LEU n 1 95 LEU n 1 96 LYS n 1 97 SER n 1 98 SER n 1 99 ALA n 1 100 ILE n 1 101 GLU n 1 102 VAL n 1 103 ILE n 1 104 MET n 1 105 LEU n 1 106 ARG n 1 107 SER n 1 108 ASN n 1 109 GLU n 1 110 SER n 1 111 PHE n 1 112 THR n 1 113 MET n 1 114 ASP n 1 115 ASP n 1 116 MET n 1 117 SER n 1 118 TRP n 1 119 THR n 1 120 CYS n 1 121 GLY n 1 122 ASN n 1 123 GLN n 1 124 ASP n 1 125 TYR n 1 126 LYS n 1 127 TYR n 1 128 ARG n 1 129 VAL n 1 130 SER n 1 131 ASP n 1 132 VAL n 1 133 THR n 1 134 LYS n 1 135 ALA n 1 136 GLY n 1 137 HIS n 1 138 SER n 1 139 LEU n 1 140 GLU n 1 141 LEU n 1 142 ILE n 1 143 GLU n 1 144 PRO n 1 145 LEU n 1 146 ILE n 1 147 LYS n 1 148 PHE n 1 149 GLN n 1 150 VAL n 1 151 GLY n 1 152 LEU n 1 153 LYS n 1 154 LYS n 1 155 LEU n 1 156 ASN n 1 157 LEU n 1 158 HIS n 1 159 GLU n 1 160 GLU n 1 161 GLU n 1 162 HIS n 1 163 VAL n 1 164 LEU n 1 165 LEU n 1 166 MET n 1 167 ALA n 1 168 ILE n 1 169 CYS n 1 170 ILE n 1 171 VAL n 1 172 SER n 1 173 PRO n 1 174 ASP n 1 175 ARG n 1 176 PRO n 1 177 GLY n 1 178 VAL n 1 179 GLN n 1 180 ASP n 1 181 ALA n 1 182 ALA n 1 183 LEU n 1 184 ILE n 1 185 GLU n 1 186 ALA n 1 187 ILE n 1 188 GLN n 1 189 ASP n 1 190 ARG n 1 191 LEU n 1 192 SER n 1 193 ASN n 1 194 THR n 1 195 LEU n 1 196 GLN n 1 197 THR n 1 198 TYR n 1 199 ILE n 1 200 ARG n 1 201 CYS n 1 202 ARG n 1 203 HIS n 1 204 PRO n 1 205 PRO n 1 206 PRO n 1 207 GLY n 1 208 SER n 1 209 HIS n 1 210 LEU n 1 211 LEU n 1 212 TYR n 1 213 ALA n 1 214 LYS n 1 215 MET n 1 216 ILE n 1 217 GLN n 1 218 LYS n 1 219 LEU n 1 220 ALA n 1 221 ASP n 1 222 LEU n 1 223 ARG n 1 224 SER n 1 225 LEU n 1 226 ASN n 1 227 GLU n 1 228 GLU n 1 229 HIS n 1 230 SER n 1 231 LYS n 1 232 GLN n 1 233 TYR n 1 234 ARG n 1 235 CYS n 1 236 LEU n 1 237 SER n 1 238 PHE n 1 239 GLN n 1 240 PRO n 1 241 GLU n 1 242 CYS n 1 243 SER n 1 244 MET n 1 245 LYS n 1 246 LEU n 1 247 THR n 1 248 PRO n 1 249 LEU n 1 250 VAL n 1 251 LEU n 1 252 GLU n 1 253 VAL n 1 254 PHE n 1 255 GLY n 1 256 ASN n 1 257 GLU n 1 258 ILE n 1 259 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 47 human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 48 259 human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP VDR_HUMAN 1 P11473 118 DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGG ? 2 UNP VDR_HUMAN 1 P11473 216 ;SVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKY RVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPG SHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1IE8 A 1 ? 47 ? P11473 118 ? 164 ? 118 164 2 2 1IE8 A 48 ? 259 ? P11473 216 ? 427 ? 216 427 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KH1 non-polymer . '5-(2-{1-[1-(4-ETHYL-4-HYDROXY-HEXYLOXY)-ETHYL]-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE}-ETHYLIDENE)-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' '1ALPHA,25-DIHYDROXYL-20-EPI-22-OXA-24,26,27-TRIHOMO VITAMIN D3' 'C29 H48 O4' 460.689 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1IE8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1IE8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.52 _reflns.number_obs 45925 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.0480000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.52 _reflns_shell.d_res_low 1.56 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.2900000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1IE8 _refine.ls_number_reflns_obs 45925 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 1.52 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2120000 _refine.ls_R_factor_R_free 0.2300000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 4678 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1992 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 214 _refine_hist.number_atoms_total 2239 _refine_hist.d_res_high 1.52 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1IE8 _struct.title 'Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to KH1060' _struct.pdbx_descriptor 'VITAMIN D3 RECEPTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IE8 _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text 'vdr, kh1060, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? TYR A 26 ? SER A 125 TYR A 143 1 ? 19 HELX_P HELX_P2 2 ASP A 32 ? PHE A 36 ? ASP A 149 PHE A 153 5 ? 5 HELX_P HELX_P3 3 SER A 48 ? LEU A 56 ? SER A 216 LEU A 224 1 ? 9 HELX_P HELX_P4 4 MET A 58 ? MET A 79 ? MET A 226 MET A 247 1 ? 22 HELX_P HELX_P5 5 GLY A 82 ? LEU A 86 ? GLY A 250 LEU A 254 5 ? 5 HELX_P HELX_P6 6 THR A 87 ? SER A 107 ? THR A 255 SER A 275 1 ? 21 HELX_P HELX_P7 7 ASN A 122 ? ASP A 124 ? ASN A 290 ASP A 292 5 ? 3 HELX_P HELX_P8 8 ARG A 128 ? LYS A 134 ? ARG A 296 LYS A 302 1 ? 7 HELX_P HELX_P9 9 SER A 138 ? LEU A 155 ? SER A 306 LEU A 323 1 ? 18 HELX_P HELX_P10 10 HIS A 158 ? VAL A 171 ? HIS A 326 VAL A 339 1 ? 14 HELX_P HELX_P11 11 ASP A 180 ? HIS A 203 ? ASP A 348 HIS A 371 1 ? 24 HELX_P HELX_P12 12 LEU A 210 ? PHE A 238 ? LEU A 378 PHE A 406 1 ? 29 HELX_P HELX_P13 13 GLU A 241 ? LEU A 246 ? GLU A 409 LEU A 414 5 ? 6 HELX_P HELX_P14 14 THR A 247 ? GLY A 255 ? THR A 415 GLY A 423 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 205 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 373 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 206 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 374 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.09 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 111 ? THR A 112 ? PHE A 279 THR A 280 A 2 SER A 117 ? THR A 119 ? SER A 285 THR A 287 A 3 LYS A 126 ? TYR A 127 ? LYS A 294 TYR A 295 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 112 ? N THR A 280 O SER A 117 ? O SER A 285 A 2 3 O TRP A 118 ? O TRP A 286 N TYR A 127 ? N TYR A 295 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE KH1 A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 TYR A 26 ? TYR A 143 . ? 1_555 ? 2 AC1 13 LEU A 59 ? LEU A 227 . ? 1_555 ? 3 AC1 13 VAL A 66 ? VAL A 234 . ? 1_555 ? 4 AC1 13 SER A 69 ? SER A 237 . ? 1_555 ? 5 AC1 13 ARG A 106 ? ARG A 274 . ? 1_555 ? 6 AC1 13 SER A 107 ? SER A 275 . ? 1_555 ? 7 AC1 13 SER A 110 ? SER A 278 . ? 1_555 ? 8 AC1 13 TRP A 118 ? TRP A 286 . ? 1_555 ? 9 AC1 13 CYS A 120 ? CYS A 288 . ? 1_555 ? 10 AC1 13 ALA A 135 ? ALA A 303 . ? 1_555 ? 11 AC1 13 HIS A 137 ? HIS A 305 . ? 1_555 ? 12 AC1 13 HIS A 229 ? HIS A 397 . ? 1_555 ? 13 AC1 13 LEU A 236 ? LEU A 404 . ? 1_555 ? # _database_PDB_matrix.entry_id 1IE8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1IE8 _atom_sites.fract_transf_matrix[1][1] 0.022477 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019279 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007611 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 118 ? ? ? A . n A 1 2 SER 2 119 ? ? ? A . n A 1 3 LEU 3 120 120 LEU LEU A . n A 1 4 ARG 4 121 121 ARG ARG A . n A 1 5 PRO 5 122 122 PRO PRO A . n A 1 6 LYS 6 123 123 LYS LYS A . n A 1 7 LEU 7 124 124 LEU LEU A . n A 1 8 SER 8 125 125 SER SER A . n A 1 9 GLU 9 126 126 GLU GLU A . n A 1 10 GLU 10 127 127 GLU GLU A . n A 1 11 GLN 11 128 128 GLN GLN A . n A 1 12 GLN 12 129 129 GLN GLN A . n A 1 13 ARG 13 130 130 ARG ARG A . n A 1 14 ILE 14 131 131 ILE ILE A . n A 1 15 ILE 15 132 132 ILE ILE A . n A 1 16 ALA 16 133 133 ALA ALA A . n A 1 17 ILE 17 134 134 ILE ILE A . n A 1 18 LEU 18 135 135 LEU LEU A . n A 1 19 LEU 19 136 136 LEU LEU A . n A 1 20 ASP 20 137 137 ASP ASP A . n A 1 21 ALA 21 138 138 ALA ALA A . n A 1 22 HIS 22 139 139 HIS HIS A . n A 1 23 HIS 23 140 140 HIS HIS A . n A 1 24 LYS 24 141 141 LYS LYS A . n A 1 25 THR 25 142 142 THR THR A . n A 1 26 TYR 26 143 143 TYR TYR A . n A 1 27 ASP 27 144 144 ASP ASP A . n A 1 28 PRO 28 145 145 PRO PRO A . n A 1 29 THR 29 146 146 THR THR A . n A 1 30 TYR 30 147 147 TYR TYR A . n A 1 31 SER 31 148 148 SER SER A . n A 1 32 ASP 32 149 149 ASP ASP A . n A 1 33 PHE 33 150 150 PHE PHE A . n A 1 34 CYS 34 151 151 CYS CYS A . n A 1 35 GLN 35 152 152 GLN GLN A . n A 1 36 PHE 36 153 153 PHE PHE A . n A 1 37 ARG 37 154 154 ARG ARG A . n A 1 38 PRO 38 155 155 PRO PRO A . n A 1 39 PRO 39 156 156 PRO PRO A . n A 1 40 VAL 40 157 157 VAL VAL A . n A 1 41 ARG 41 158 158 ARG ARG A . n A 1 42 VAL 42 159 159 VAL VAL A . n A 1 43 ASN 43 160 160 ASN ASN A . n A 1 44 ASP 44 161 161 ASP ASP A . n A 1 45 GLY 45 162 162 GLY GLY A . n A 1 46 GLY 46 163 163 GLY GLY A . n A 1 47 GLY 47 164 164 GLY GLY A . n A 1 48 SER 48 216 216 SER SER A . n A 1 49 VAL 49 217 217 VAL VAL A . n A 1 50 THR 50 218 218 THR THR A . n A 1 51 LEU 51 219 219 LEU LEU A . n A 1 52 GLU 52 220 220 GLU GLU A . n A 1 53 LEU 53 221 221 LEU LEU A . n A 1 54 SER 54 222 222 SER SER A . n A 1 55 GLN 55 223 223 GLN GLN A . n A 1 56 LEU 56 224 224 LEU LEU A . n A 1 57 SER 57 225 225 SER SER A . n A 1 58 MET 58 226 226 MET MET A . n A 1 59 LEU 59 227 227 LEU LEU A . n A 1 60 PRO 60 228 228 PRO PRO A . n A 1 61 HIS 61 229 229 HIS HIS A . n A 1 62 LEU 62 230 230 LEU LEU A . n A 1 63 ALA 63 231 231 ALA ALA A . n A 1 64 ASP 64 232 232 ASP ASP A . n A 1 65 LEU 65 233 233 LEU LEU A . n A 1 66 VAL 66 234 234 VAL VAL A . n A 1 67 SER 67 235 235 SER SER A . n A 1 68 TYR 68 236 236 TYR TYR A . n A 1 69 SER 69 237 237 SER SER A . n A 1 70 ILE 70 238 238 ILE ILE A . n A 1 71 GLN 71 239 239 GLN GLN A . n A 1 72 LYS 72 240 240 LYS LYS A . n A 1 73 VAL 73 241 241 VAL VAL A . n A 1 74 ILE 74 242 242 ILE ILE A . n A 1 75 GLY 75 243 243 GLY GLY A . n A 1 76 PHE 76 244 244 PHE PHE A . n A 1 77 ALA 77 245 245 ALA ALA A . n A 1 78 LYS 78 246 246 LYS LYS A . n A 1 79 MET 79 247 247 MET MET A . n A 1 80 ILE 80 248 248 ILE ILE A . n A 1 81 PRO 81 249 249 PRO PRO A . n A 1 82 GLY 82 250 250 GLY GLY A . n A 1 83 PHE 83 251 251 PHE PHE A . n A 1 84 ARG 84 252 252 ARG ARG A . n A 1 85 ASP 85 253 253 ASP ASP A . n A 1 86 LEU 86 254 254 LEU LEU A . n A 1 87 THR 87 255 255 THR THR A . n A 1 88 SER 88 256 256 SER SER A . n A 1 89 GLU 89 257 257 GLU GLU A . n A 1 90 ASP 90 258 258 ASP ASP A . n A 1 91 GLN 91 259 259 GLN GLN A . n A 1 92 ILE 92 260 260 ILE ILE A . n A 1 93 VAL 93 261 261 VAL VAL A . n A 1 94 LEU 94 262 262 LEU LEU A . n A 1 95 LEU 95 263 263 LEU LEU A . n A 1 96 LYS 96 264 264 LYS LYS A . n A 1 97 SER 97 265 265 SER SER A . n A 1 98 SER 98 266 266 SER SER A . n A 1 99 ALA 99 267 267 ALA ALA A . n A 1 100 ILE 100 268 268 ILE ILE A . n A 1 101 GLU 101 269 269 GLU GLU A . n A 1 102 VAL 102 270 270 VAL VAL A . n A 1 103 ILE 103 271 271 ILE ILE A . n A 1 104 MET 104 272 272 MET MET A . n A 1 105 LEU 105 273 273 LEU LEU A . n A 1 106 ARG 106 274 274 ARG ARG A . n A 1 107 SER 107 275 275 SER SER A . n A 1 108 ASN 108 276 276 ASN ASN A . n A 1 109 GLU 109 277 277 GLU GLU A . n A 1 110 SER 110 278 278 SER SER A . n A 1 111 PHE 111 279 279 PHE PHE A . n A 1 112 THR 112 280 280 THR THR A . n A 1 113 MET 113 281 281 MET MET A . n A 1 114 ASP 114 282 282 ASP ASP A . n A 1 115 ASP 115 283 283 ASP ASP A . n A 1 116 MET 116 284 284 MET MET A . n A 1 117 SER 117 285 285 SER SER A . n A 1 118 TRP 118 286 286 TRP TRP A . n A 1 119 THR 119 287 287 THR THR A . n A 1 120 CYS 120 288 288 CYS CYS A . n A 1 121 GLY 121 289 289 GLY GLY A . n A 1 122 ASN 122 290 290 ASN ASN A . n A 1 123 GLN 123 291 291 GLN GLN A . n A 1 124 ASP 124 292 292 ASP ASP A . n A 1 125 TYR 125 293 293 TYR TYR A . n A 1 126 LYS 126 294 294 LYS LYS A . n A 1 127 TYR 127 295 295 TYR TYR A . n A 1 128 ARG 128 296 296 ARG ARG A . n A 1 129 VAL 129 297 297 VAL VAL A . n A 1 130 SER 130 298 298 SER SER A . n A 1 131 ASP 131 299 299 ASP ASP A . n A 1 132 VAL 132 300 300 VAL VAL A . n A 1 133 THR 133 301 301 THR THR A . n A 1 134 LYS 134 302 302 LYS LYS A . n A 1 135 ALA 135 303 303 ALA ALA A . n A 1 136 GLY 136 304 304 GLY GLY A . n A 1 137 HIS 137 305 305 HIS HIS A . n A 1 138 SER 138 306 306 SER SER A . n A 1 139 LEU 139 307 307 LEU LEU A . n A 1 140 GLU 140 308 308 GLU GLU A . n A 1 141 LEU 141 309 309 LEU LEU A . n A 1 142 ILE 142 310 310 ILE ILE A . n A 1 143 GLU 143 311 311 GLU GLU A . n A 1 144 PRO 144 312 312 PRO PRO A . n A 1 145 LEU 145 313 313 LEU LEU A . n A 1 146 ILE 146 314 314 ILE ILE A . n A 1 147 LYS 147 315 315 LYS LYS A . n A 1 148 PHE 148 316 316 PHE PHE A . n A 1 149 GLN 149 317 317 GLN GLN A . n A 1 150 VAL 150 318 318 VAL VAL A . n A 1 151 GLY 151 319 319 GLY GLY A . n A 1 152 LEU 152 320 320 LEU LEU A . n A 1 153 LYS 153 321 321 LYS LYS A . n A 1 154 LYS 154 322 322 LYS LYS A . n A 1 155 LEU 155 323 323 LEU LEU A . n A 1 156 ASN 156 324 324 ASN ASN A . n A 1 157 LEU 157 325 325 LEU LEU A . n A 1 158 HIS 158 326 326 HIS HIS A . n A 1 159 GLU 159 327 327 GLU GLU A . n A 1 160 GLU 160 328 328 GLU GLU A . n A 1 161 GLU 161 329 329 GLU GLU A . n A 1 162 HIS 162 330 330 HIS HIS A . n A 1 163 VAL 163 331 331 VAL VAL A . n A 1 164 LEU 164 332 332 LEU LEU A . n A 1 165 LEU 165 333 333 LEU LEU A . n A 1 166 MET 166 334 334 MET MET A . n A 1 167 ALA 167 335 335 ALA ALA A . n A 1 168 ILE 168 336 336 ILE ILE A . n A 1 169 CYS 169 337 337 CYS CYS A . n A 1 170 ILE 170 338 338 ILE ILE A . n A 1 171 VAL 171 339 339 VAL VAL A . n A 1 172 SER 172 340 340 SER SER A . n A 1 173 PRO 173 341 341 PRO PRO A . n A 1 174 ASP 174 342 342 ASP ASP A . n A 1 175 ARG 175 343 343 ARG ARG A . n A 1 176 PRO 176 344 344 PRO PRO A . n A 1 177 GLY 177 345 345 GLY GLY A . n A 1 178 VAL 178 346 346 VAL VAL A . n A 1 179 GLN 179 347 347 GLN GLN A . n A 1 180 ASP 180 348 348 ASP ASP A . n A 1 181 ALA 181 349 349 ALA ALA A . n A 1 182 ALA 182 350 350 ALA ALA A . n A 1 183 LEU 183 351 351 LEU LEU A . n A 1 184 ILE 184 352 352 ILE ILE A . n A 1 185 GLU 185 353 353 GLU GLU A . n A 1 186 ALA 186 354 354 ALA ALA A . n A 1 187 ILE 187 355 355 ILE ILE A . n A 1 188 GLN 188 356 356 GLN GLN A . n A 1 189 ASP 189 357 357 ASP ASP A . n A 1 190 ARG 190 358 358 ARG ARG A . n A 1 191 LEU 191 359 359 LEU LEU A . n A 1 192 SER 192 360 360 SER SER A . n A 1 193 ASN 193 361 361 ASN ASN A . n A 1 194 THR 194 362 362 THR THR A . n A 1 195 LEU 195 363 363 LEU LEU A . n A 1 196 GLN 196 364 364 GLN GLN A . n A 1 197 THR 197 365 365 THR THR A . n A 1 198 TYR 198 366 366 TYR TYR A . n A 1 199 ILE 199 367 367 ILE ILE A . n A 1 200 ARG 200 368 368 ARG ARG A . n A 1 201 CYS 201 369 369 CYS CYS A . n A 1 202 ARG 202 370 370 ARG ARG A . n A 1 203 HIS 203 371 371 HIS HIS A . n A 1 204 PRO 204 372 372 PRO PRO A . n A 1 205 PRO 205 373 373 PRO PRO A . n A 1 206 PRO 206 374 374 PRO PRO A . n A 1 207 GLY 207 375 ? ? ? A . n A 1 208 SER 208 376 ? ? ? A . n A 1 209 HIS 209 377 ? ? ? A . n A 1 210 LEU 210 378 378 LEU LEU A . n A 1 211 LEU 211 379 379 LEU LEU A . n A 1 212 TYR 212 380 380 TYR TYR A . n A 1 213 ALA 213 381 381 ALA ALA A . n A 1 214 LYS 214 382 382 LYS LYS A . n A 1 215 MET 215 383 383 MET MET A . n A 1 216 ILE 216 384 384 ILE ILE A . n A 1 217 GLN 217 385 385 GLN GLN A . n A 1 218 LYS 218 386 386 LYS LYS A . n A 1 219 LEU 219 387 387 LEU LEU A . n A 1 220 ALA 220 388 388 ALA ALA A . n A 1 221 ASP 221 389 389 ASP ASP A . n A 1 222 LEU 222 390 390 LEU LEU A . n A 1 223 ARG 223 391 391 ARG ARG A . n A 1 224 SER 224 392 392 SER SER A . n A 1 225 LEU 225 393 393 LEU LEU A . n A 1 226 ASN 226 394 394 ASN ASN A . n A 1 227 GLU 227 395 395 GLU GLU A . n A 1 228 GLU 228 396 396 GLU GLU A . n A 1 229 HIS 229 397 397 HIS HIS A . n A 1 230 SER 230 398 398 SER SER A . n A 1 231 LYS 231 399 399 LYS LYS A . n A 1 232 GLN 232 400 400 GLN GLN A . n A 1 233 TYR 233 401 401 TYR TYR A . n A 1 234 ARG 234 402 402 ARG ARG A . n A 1 235 CYS 235 403 403 CYS CYS A . n A 1 236 LEU 236 404 404 LEU LEU A . n A 1 237 SER 237 405 405 SER SER A . n A 1 238 PHE 238 406 406 PHE PHE A . n A 1 239 GLN 239 407 407 GLN GLN A . n A 1 240 PRO 240 408 408 PRO PRO A . n A 1 241 GLU 241 409 409 GLU GLU A . n A 1 242 CYS 242 410 410 CYS CYS A . n A 1 243 SER 243 411 411 SER SER A . n A 1 244 MET 244 412 412 MET MET A . n A 1 245 LYS 245 413 413 LYS LYS A . n A 1 246 LEU 246 414 414 LEU LEU A . n A 1 247 THR 247 415 415 THR THR A . n A 1 248 PRO 248 416 416 PRO PRO A . n A 1 249 LEU 249 417 417 LEU LEU A . n A 1 250 VAL 250 418 418 VAL VAL A . n A 1 251 LEU 251 419 419 LEU LEU A . n A 1 252 GLU 252 420 420 GLU GLU A . n A 1 253 VAL 253 421 421 VAL VAL A . n A 1 254 PHE 254 422 422 PHE PHE A . n A 1 255 GLY 255 423 423 GLY GLY A . n A 1 256 ASN 256 424 ? ? ? A . n A 1 257 GLU 257 425 ? ? ? A . n A 1 258 ILE 258 426 ? ? ? A . n A 1 259 SER 259 427 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KH1 1 500 500 KH1 KH A . C 3 HOH 1 501 1 HOH TIP A . C 3 HOH 2 502 2 HOH TIP A . C 3 HOH 3 503 3 HOH TIP A . C 3 HOH 4 504 4 HOH TIP A . C 3 HOH 5 505 5 HOH TIP A . C 3 HOH 6 506 6 HOH TIP A . C 3 HOH 7 507 7 HOH TIP A . C 3 HOH 8 508 8 HOH TIP A . C 3 HOH 9 509 9 HOH TIP A . C 3 HOH 10 510 10 HOH TIP A . C 3 HOH 11 511 11 HOH TIP A . C 3 HOH 12 512 12 HOH TIP A . C 3 HOH 13 513 13 HOH TIP A . C 3 HOH 14 514 14 HOH TIP A . C 3 HOH 15 515 15 HOH TIP A . C 3 HOH 16 516 16 HOH TIP A . C 3 HOH 17 517 17 HOH TIP A . C 3 HOH 18 518 18 HOH TIP A . C 3 HOH 19 519 19 HOH TIP A . C 3 HOH 20 520 20 HOH TIP A . C 3 HOH 21 521 21 HOH TIP A . C 3 HOH 22 522 22 HOH TIP A . C 3 HOH 23 523 23 HOH TIP A . C 3 HOH 24 524 24 HOH TIP A . C 3 HOH 25 525 25 HOH TIP A . C 3 HOH 26 526 26 HOH TIP A . C 3 HOH 27 527 27 HOH TIP A . C 3 HOH 28 528 28 HOH TIP A . C 3 HOH 29 529 29 HOH TIP A . C 3 HOH 30 530 30 HOH TIP A . C 3 HOH 31 531 31 HOH TIP A . C 3 HOH 32 532 32 HOH TIP A . C 3 HOH 33 533 33 HOH TIP A . C 3 HOH 34 534 34 HOH TIP A . C 3 HOH 35 535 35 HOH TIP A . C 3 HOH 36 536 36 HOH TIP A . C 3 HOH 37 537 37 HOH TIP A . C 3 HOH 38 538 38 HOH TIP A . C 3 HOH 39 539 39 HOH TIP A . C 3 HOH 40 540 40 HOH TIP A . C 3 HOH 41 541 41 HOH TIP A . C 3 HOH 42 542 42 HOH TIP A . C 3 HOH 43 543 43 HOH TIP A . C 3 HOH 44 544 44 HOH TIP A . C 3 HOH 45 545 45 HOH TIP A . C 3 HOH 46 546 46 HOH TIP A . C 3 HOH 47 547 47 HOH TIP A . C 3 HOH 48 548 48 HOH TIP A . C 3 HOH 49 549 49 HOH TIP A . C 3 HOH 50 550 50 HOH TIP A . C 3 HOH 51 551 51 HOH TIP A . C 3 HOH 52 552 52 HOH TIP A . C 3 HOH 53 553 53 HOH TIP A . C 3 HOH 54 554 54 HOH TIP A . C 3 HOH 55 555 55 HOH TIP A . C 3 HOH 56 556 56 HOH TIP A . C 3 HOH 57 557 57 HOH TIP A . C 3 HOH 58 558 58 HOH TIP A . C 3 HOH 59 559 59 HOH TIP A . C 3 HOH 60 560 60 HOH TIP A . C 3 HOH 61 561 61 HOH TIP A . C 3 HOH 62 562 62 HOH TIP A . C 3 HOH 63 563 63 HOH TIP A . C 3 HOH 64 564 64 HOH TIP A . C 3 HOH 65 565 65 HOH TIP A . C 3 HOH 66 566 66 HOH TIP A . C 3 HOH 67 567 67 HOH TIP A . C 3 HOH 68 568 68 HOH TIP A . C 3 HOH 69 569 69 HOH TIP A . C 3 HOH 70 570 70 HOH TIP A . C 3 HOH 71 571 71 HOH TIP A . C 3 HOH 72 572 72 HOH TIP A . C 3 HOH 73 573 73 HOH TIP A . C 3 HOH 74 574 74 HOH TIP A . C 3 HOH 75 575 75 HOH TIP A . C 3 HOH 76 576 76 HOH TIP A . C 3 HOH 77 577 77 HOH TIP A . C 3 HOH 78 578 78 HOH TIP A . C 3 HOH 79 579 79 HOH TIP A . C 3 HOH 80 580 80 HOH TIP A . C 3 HOH 81 581 81 HOH TIP A . C 3 HOH 82 582 82 HOH TIP A . C 3 HOH 83 583 83 HOH TIP A . C 3 HOH 84 584 84 HOH TIP A . C 3 HOH 85 585 85 HOH TIP A . C 3 HOH 86 586 86 HOH TIP A . C 3 HOH 87 587 87 HOH TIP A . C 3 HOH 88 588 88 HOH TIP A . C 3 HOH 89 589 89 HOH TIP A . C 3 HOH 90 590 90 HOH TIP A . C 3 HOH 91 591 91 HOH TIP A . C 3 HOH 92 592 92 HOH TIP A . C 3 HOH 93 593 93 HOH TIP A . C 3 HOH 94 594 94 HOH TIP A . C 3 HOH 95 595 95 HOH TIP A . C 3 HOH 96 596 96 HOH TIP A . C 3 HOH 97 597 97 HOH TIP A . C 3 HOH 98 598 98 HOH TIP A . C 3 HOH 99 599 99 HOH TIP A . C 3 HOH 100 600 100 HOH TIP A . C 3 HOH 101 601 101 HOH TIP A . C 3 HOH 102 602 102 HOH TIP A . C 3 HOH 103 603 103 HOH TIP A . C 3 HOH 104 604 104 HOH TIP A . C 3 HOH 105 605 105 HOH TIP A . C 3 HOH 106 606 106 HOH TIP A . C 3 HOH 107 607 107 HOH TIP A . C 3 HOH 108 608 108 HOH TIP A . C 3 HOH 109 609 109 HOH TIP A . C 3 HOH 110 610 110 HOH TIP A . C 3 HOH 111 611 111 HOH TIP A . C 3 HOH 112 612 112 HOH TIP A . C 3 HOH 113 613 113 HOH TIP A . C 3 HOH 114 614 114 HOH TIP A . C 3 HOH 115 615 115 HOH TIP A . C 3 HOH 116 616 116 HOH TIP A . C 3 HOH 117 617 117 HOH TIP A . C 3 HOH 118 618 118 HOH TIP A . C 3 HOH 119 619 119 HOH TIP A . C 3 HOH 120 620 120 HOH TIP A . C 3 HOH 121 621 121 HOH TIP A . C 3 HOH 122 622 122 HOH TIP A . C 3 HOH 123 623 123 HOH TIP A . C 3 HOH 124 624 124 HOH TIP A . C 3 HOH 125 625 125 HOH TIP A . C 3 HOH 126 626 126 HOH TIP A . C 3 HOH 127 627 127 HOH TIP A . C 3 HOH 128 628 128 HOH TIP A . C 3 HOH 129 629 129 HOH TIP A . C 3 HOH 130 630 130 HOH TIP A . C 3 HOH 131 631 131 HOH TIP A . C 3 HOH 132 632 132 HOH TIP A . C 3 HOH 133 633 133 HOH TIP A . C 3 HOH 134 634 134 HOH TIP A . C 3 HOH 135 635 135 HOH TIP A . C 3 HOH 136 636 136 HOH TIP A . C 3 HOH 137 637 137 HOH TIP A . C 3 HOH 138 638 138 HOH TIP A . C 3 HOH 139 639 139 HOH TIP A . C 3 HOH 140 640 140 HOH TIP A . C 3 HOH 141 641 141 HOH TIP A . C 3 HOH 142 642 142 HOH TIP A . C 3 HOH 143 643 143 HOH TIP A . C 3 HOH 144 644 144 HOH TIP A . C 3 HOH 145 645 145 HOH TIP A . C 3 HOH 146 646 146 HOH TIP A . C 3 HOH 147 647 147 HOH TIP A . C 3 HOH 148 648 148 HOH TIP A . C 3 HOH 149 649 149 HOH TIP A . C 3 HOH 150 650 150 HOH TIP A . C 3 HOH 151 651 151 HOH TIP A . C 3 HOH 152 652 152 HOH TIP A . C 3 HOH 153 653 153 HOH TIP A . C 3 HOH 154 654 154 HOH TIP A . C 3 HOH 155 655 155 HOH TIP A . C 3 HOH 156 656 156 HOH TIP A . C 3 HOH 157 657 157 HOH TIP A . C 3 HOH 158 658 158 HOH TIP A . C 3 HOH 159 659 159 HOH TIP A . C 3 HOH 160 660 160 HOH TIP A . C 3 HOH 161 661 161 HOH TIP A . C 3 HOH 162 662 162 HOH TIP A . C 3 HOH 163 663 163 HOH TIP A . C 3 HOH 164 664 164 HOH TIP A . C 3 HOH 165 665 165 HOH TIP A . C 3 HOH 166 666 166 HOH TIP A . C 3 HOH 167 667 167 HOH TIP A . C 3 HOH 168 668 168 HOH TIP A . C 3 HOH 169 669 169 HOH TIP A . C 3 HOH 170 670 170 HOH TIP A . C 3 HOH 171 671 171 HOH TIP A . C 3 HOH 172 672 172 HOH TIP A . C 3 HOH 173 673 173 HOH TIP A . C 3 HOH 174 674 174 HOH TIP A . C 3 HOH 175 675 175 HOH TIP A . C 3 HOH 176 676 176 HOH TIP A . C 3 HOH 177 677 177 HOH TIP A . C 3 HOH 178 678 178 HOH TIP A . C 3 HOH 179 679 179 HOH TIP A . C 3 HOH 180 680 180 HOH TIP A . C 3 HOH 181 681 181 HOH TIP A . C 3 HOH 182 682 182 HOH TIP A . C 3 HOH 183 683 183 HOH TIP A . C 3 HOH 184 684 184 HOH TIP A . C 3 HOH 185 685 185 HOH TIP A . C 3 HOH 186 686 186 HOH TIP A . C 3 HOH 187 687 187 HOH TIP A . C 3 HOH 188 688 188 HOH TIP A . C 3 HOH 189 689 189 HOH TIP A . C 3 HOH 190 690 190 HOH TIP A . C 3 HOH 191 691 191 HOH TIP A . C 3 HOH 192 692 192 HOH TIP A . C 3 HOH 193 693 193 HOH TIP A . C 3 HOH 194 694 194 HOH TIP A . C 3 HOH 195 695 195 HOH TIP A . C 3 HOH 196 696 196 HOH TIP A . C 3 HOH 197 697 197 HOH TIP A . C 3 HOH 198 698 198 HOH TIP A . C 3 HOH 199 699 199 HOH TIP A . C 3 HOH 200 700 200 HOH TIP A . C 3 HOH 201 701 201 HOH TIP A . C 3 HOH 202 702 202 HOH TIP A . C 3 HOH 203 703 203 HOH TIP A . C 3 HOH 204 704 204 HOH TIP A . C 3 HOH 205 705 205 HOH TIP A . C 3 HOH 206 706 206 HOH TIP A . C 3 HOH 207 707 207 HOH TIP A . C 3 HOH 208 708 208 HOH TIP A . C 3 HOH 209 709 209 HOH TIP A . C 3 HOH 210 710 210 HOH TIP A . C 3 HOH 211 711 211 HOH TIP A . C 3 HOH 212 712 212 HOH TIP A . C 3 HOH 213 713 213 HOH TIP A . C 3 HOH 214 714 214 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 CCP4 'data scaling' '(TRUNCATE)' ? 3 CNS phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE PROTEIN HAS BEEN GENETICALLY ENGINEERED TO LACK RESIDUES 165-215. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 161 ? ? -153.56 45.83 2 1 ASP A 283 ? ? -141.59 15.86 3 1 ARG A 368 ? ? -85.76 40.97 4 1 CYS A 369 ? ? -154.46 -46.29 5 1 LEU A 414 ? ? -99.40 -154.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 118 ? A ASP 1 2 1 Y 1 A SER 119 ? A SER 2 3 1 Y 1 A GLY 375 ? A GLY 207 4 1 Y 1 A SER 376 ? A SER 208 5 1 Y 1 A HIS 377 ? A HIS 209 6 1 Y 1 A ASN 424 ? A ASN 256 7 1 Y 1 A GLU 425 ? A GLU 257 8 1 Y 1 A ILE 426 ? A ILE 258 9 1 Y 1 A SER 427 ? A SER 259 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-(2-{1-[1-(4-ETHYL-4-HYDROXY-HEXYLOXY)-ETHYL]-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE}-ETHYLIDENE)-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' KH1 3 water HOH #