HEADER RNA BINDING PROTEIN 13-APR-01 1IFW TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF POLY(A) BINDING PROTEIN TITLE 2 FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (490-576); COMPND 5 SYNONYM: POLYADENYLATE TAIL-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PAB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ALL-HELICAL DOMAIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.KOZLOV,N.SIDDIQUI,S.COILLET-MATILLON,T.SPRULES,I.EKIEL,K.GEHRING REVDAT 3 23-FEB-22 1IFW 1 REMARK SEQADV REVDAT 2 24-FEB-09 1IFW 1 VERSN REVDAT 1 24-JUL-02 1IFW 0 JRNL AUTH G.KOZLOV,N.SIDDIQUI,S.COILLET-MATILLON,J.F.TREMPE,I.EKIEL, JRNL AUTH 2 T.SPRULES,K.GEHRING JRNL TITL SOLUTION STRUCTURE OF THE ORPHAN PABC DOMAIN FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE POLY(A)-BINDING PROTEIN. JRNL REF J.BIOL.CHEM. V. 277 22822 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11940585 JRNL DOI 10.1074/JBC.M201230200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, CNS 0.9 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON 972 NOE DISTANCE CONSTRAINTS, 69 REMARK 3 DIHEDRAL ANGLES REMARK 3 CONSTRAINTS AND 40 HYDROGEN BONDS. REMARK 4 REMARK 4 1IFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013235. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM PROTEIN, 50MM PHOSPHATE REMARK 210 BUFFER, 0.1M NACL, 1MM NAN3; 3MM REMARK 210 PROTEIN, 50MM PHOSPHATE BUFFER, REMARK 210 0.1M NACL, 1MM NAN3; 3MM PROTEIN REMARK 210 U-15N, 50MM PHOSPHATE BUFFER, REMARK 210 0.1M NACL, 1MM NAN3; 3MM PROTEIN REMARK 210 U-15N,13C, 50MM PHOSPHATE BUFFER, REMARK 210 0.1M NACL, 1MM NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.31, XEASY 1.3.13, CNS REMARK 210 0.9, ARIA 0.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 THE STRUCTURE WAS DETERMINED USING STANDARD TRIPLE-RESONANCE AND REMARK 210 HOMONUCLEAR REMARK 210 TECHNIQUES. THE N-TERMINAL SEQUENCE GPLGS IS A CLONING ARTIFACT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 67 H TYR A 71 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 15 44.85 -86.04 REMARK 500 1 ALA A 23 -73.19 -60.76 REMARK 500 1 SER A 37 40.00 -91.71 REMARK 500 1 ALA A 41 -70.50 -75.42 REMARK 500 1 PRO A 53 168.30 -47.80 REMARK 500 1 GLU A 84 44.94 -88.52 REMARK 500 2 ALA A 23 -71.63 -61.52 REMARK 500 2 THR A 36 167.63 176.31 REMARK 500 2 SER A 37 36.56 -98.34 REMARK 500 2 PRO A 53 172.32 -47.58 REMARK 500 3 LEU A 3 -69.48 -91.70 REMARK 500 3 ALA A 9 81.95 -62.05 REMARK 500 3 GLN A 17 38.18 -88.91 REMARK 500 3 ALA A 23 -72.66 -66.62 REMARK 500 3 SER A 37 39.41 -87.18 REMARK 500 3 PRO A 53 175.62 -46.45 REMARK 500 3 THR A 89 79.06 -100.58 REMARK 500 4 PHE A 15 46.70 -80.61 REMARK 500 4 ALA A 23 -75.49 -68.80 REMARK 500 4 THR A 36 161.95 179.62 REMARK 500 4 SER A 37 38.51 -97.28 REMARK 500 4 LYS A 44 -70.12 -72.99 REMARK 500 4 PRO A 53 172.76 -53.24 REMARK 500 4 GLU A 84 39.98 -83.86 REMARK 500 4 GLN A 87 -60.76 -98.03 REMARK 500 4 THR A 89 73.02 -111.03 REMARK 500 5 ASN A 13 94.82 -57.72 REMARK 500 5 ALA A 23 -71.40 -65.99 REMARK 500 5 SER A 37 37.33 -86.60 REMARK 500 5 PRO A 53 175.77 -48.07 REMARK 500 5 PRO A 54 -70.28 -58.08 REMARK 500 5 GLU A 84 37.86 -85.16 REMARK 500 6 PRO A 2 94.08 -55.70 REMARK 500 6 ALA A 23 -71.93 -69.04 REMARK 500 6 ALA A 34 -7.40 -59.14 REMARK 500 6 SER A 37 38.19 -89.01 REMARK 500 6 PRO A 53 170.67 -50.91 REMARK 500 6 GLU A 90 -173.07 -66.02 REMARK 500 7 ALA A 23 -73.93 -65.33 REMARK 500 7 SER A 37 38.57 -98.18 REMARK 500 8 GLN A 14 40.36 -95.08 REMARK 500 8 ALA A 23 -72.32 -64.06 REMARK 500 8 SER A 37 38.34 -92.57 REMARK 500 8 ALA A 41 -70.73 -79.55 REMARK 500 8 PRO A 53 166.96 -45.74 REMARK 500 8 GLN A 85 86.03 -65.10 REMARK 500 8 THR A 89 -147.98 -113.34 REMARK 500 9 ALA A 23 -74.56 -61.54 REMARK 500 9 THR A 36 166.42 178.98 REMARK 500 9 SER A 37 37.03 -89.55 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1IFW A 6 92 UNP P04147 PABP_YEAST 490 576 SEQADV 1IFW GLY A 1 UNP P04147 CLONING ARTIFACT SEQADV 1IFW PRO A 2 UNP P04147 CLONING ARTIFACT SEQADV 1IFW LEU A 3 UNP P04147 CLONING ARTIFACT SEQADV 1IFW GLY A 4 UNP P04147 CLONING ARTIFACT SEQADV 1IFW SER A 5 UNP P04147 CLONING ARTIFACT SEQRES 1 A 92 GLY PRO LEU GLY SER PRO ARG ASN ALA ASN ASP ASN ASN SEQRES 2 A 92 GLN PHE TYR GLN GLN LYS GLN ARG GLN ALA LEU GLY GLU SEQRES 3 A 92 GLN LEU TYR LYS LYS VAL SER ALA LYS THR SER ASN GLU SEQRES 4 A 92 GLU ALA ALA GLY LYS ILE THR GLY MET ILE LEU ASP LEU SEQRES 5 A 92 PRO PRO GLN GLU VAL PHE PRO LEU LEU GLU SER ASP GLU SEQRES 6 A 92 LEU PHE GLU GLN HIS TYR LYS GLU ALA SER ALA ALA TYR SEQRES 7 A 92 GLU SER PHE LYS LYS GLU GLN GLU GLN GLN THR GLU GLN SEQRES 8 A 92 ALA HELIX 1 1 PHE A 15 LYS A 19 5 5 HELIX 2 2 GLN A 20 SER A 33 1 14 HELIX 3 3 ALA A 34 THR A 36 5 3 HELIX 4 4 ASN A 38 LEU A 50 1 13 HELIX 5 5 PRO A 59 GLU A 62 5 4 HELIX 6 6 SER A 63 GLN A 85 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1