HEADER TRANSFERASE 16-APR-01 1IG3 TITLE MOUSE THIAMIN PYROPHOSPHOKINASE COMPLEXED WITH THIAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMIN PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.6.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, ALPHA/BETA/ALPHA SANDWICH, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.TIMM,J.LIU,L.-J.BAKER,R.A.HARRIS REVDAT 5 07-FEB-24 1IG3 1 REMARK SEQADV HETSYN REVDAT 4 24-FEB-09 1IG3 1 VERSN REVDAT 3 01-APR-03 1IG3 1 JRNL REVDAT 2 04-JUL-01 1IG3 1 JRNL REVDAT 1 25-APR-01 1IG3 0 JRNL AUTH D.E.TIMM,J.LIU,L.J.BAKER,R.A.HARRIS JRNL TITL CRYSTAL STRUCTURE OF THIAMIN PYROPHOSPHOKINASE. JRNL REF J.MOL.BIOL. V. 310 195 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11419946 JRNL DOI 10.1006/JMBI.2001.4727 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 52413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2606 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.427 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, HEPES REMARK 280 BUFFER, PH 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.06667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.06667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -362.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 155.53816 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.06667 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 44.90000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 77.76908 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 47.03333 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 44.90000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 77.76908 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 47.03333 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -400.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 155.53816 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.06667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 164 O2 SO4 B 607 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 719 O HOH B 788 6665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -122.57 42.67 REMARK 500 GLU A 79 30.53 -140.31 REMARK 500 ASP A 115 103.79 -4.03 REMARK 500 LYS A 178 -112.38 57.53 REMARK 500 ASP B 66 -121.67 38.75 REMARK 500 GLU B 79 28.00 -149.29 REMARK 500 LYS B 178 -114.25 57.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIB B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIB A 502 DBREF 1IG3 A 21 263 UNP Q9R0M5 TPK1_MOUSE 1 243 DBREF 1IG3 B 21 263 UNP Q9R0M5 TPK1_MOUSE 1 243 SEQADV 1IG3 MET A 1 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY A 2 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER A 3 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER A 4 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 5 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 6 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 7 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 8 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 9 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 10 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER A 11 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER A 12 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY A 13 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 LEU A 14 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 VAL A 15 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 PRO A 16 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 ARG A 17 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY A 18 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER A 19 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS A 20 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 MET B 1 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY B 2 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER B 3 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER B 4 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 5 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 6 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 7 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 8 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 9 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 10 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER B 11 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER B 12 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY B 13 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 LEU B 14 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 VAL B 15 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 PRO B 16 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 ARG B 17 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 GLY B 18 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 SER B 19 UNP Q9R0M5 EXPRESSION TAG SEQADV 1IG3 HIS B 20 UNP Q9R0M5 EXPRESSION TAG SEQRES 1 A 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 263 LEU VAL PRO ARG GLY SER HIS MET GLU HIS ALA PHE THR SEQRES 3 A 263 PRO LEU GLU PRO LEU LEU PRO THR GLY ASN LEU LYS TYR SEQRES 4 A 263 CYS LEU VAL VAL LEU ASN GLN PRO LEU ASP ALA ARG PHE SEQRES 5 A 263 ARG HIS LEU TRP LYS LYS ALA LEU LEU ARG ALA CYS ALA SEQRES 6 A 263 ASP GLY GLY ALA ASN HIS LEU TYR ASP LEU THR GLU GLY SEQRES 7 A 263 GLU ARG GLU SER PHE LEU PRO GLU PHE VAL SER GLY ASP SEQRES 8 A 263 PHE ASP SER ILE ARG PRO GLU VAL LYS GLU TYR TYR THR SEQRES 9 A 263 LYS LYS GLY CYS ASP LEU ILE SER THR PRO ASP GLN ASP SEQRES 10 A 263 HIS THR ASP PHE THR LYS CYS LEU GLN VAL LEU GLN ARG SEQRES 11 A 263 LYS ILE GLU GLU LYS GLU LEU GLN VAL ASP VAL ILE VAL SEQRES 12 A 263 THR LEU GLY GLY LEU GLY GLY ARG PHE ASP GLN ILE MET SEQRES 13 A 263 ALA SER VAL ASN THR LEU PHE GLN ALA THR HIS ILE THR SEQRES 14 A 263 PRO VAL PRO ILE ILE ILE ILE GLN LYS ASP SER LEU ILE SEQRES 15 A 263 TYR LEU LEU GLN PRO GLY LYS HIS ARG LEU HIS VAL ASP SEQRES 16 A 263 THR GLY MET GLU GLY SER TRP CYS GLY LEU ILE PRO VAL SEQRES 17 A 263 GLY GLN PRO CYS ASN GLN VAL THR THR THR GLY LEU LYS SEQRES 18 A 263 TRP ASN LEU THR ASN ASP VAL LEU GLY PHE GLY THR LEU SEQRES 19 A 263 VAL SER THR SER ASN THR TYR ASP GLY SER GLY LEU VAL SEQRES 20 A 263 THR VAL GLU THR ASP HIS PRO LEU LEU TRP THR MET ALA SEQRES 21 A 263 ILE LYS SER SEQRES 1 B 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 263 LEU VAL PRO ARG GLY SER HIS MET GLU HIS ALA PHE THR SEQRES 3 B 263 PRO LEU GLU PRO LEU LEU PRO THR GLY ASN LEU LYS TYR SEQRES 4 B 263 CYS LEU VAL VAL LEU ASN GLN PRO LEU ASP ALA ARG PHE SEQRES 5 B 263 ARG HIS LEU TRP LYS LYS ALA LEU LEU ARG ALA CYS ALA SEQRES 6 B 263 ASP GLY GLY ALA ASN HIS LEU TYR ASP LEU THR GLU GLY SEQRES 7 B 263 GLU ARG GLU SER PHE LEU PRO GLU PHE VAL SER GLY ASP SEQRES 8 B 263 PHE ASP SER ILE ARG PRO GLU VAL LYS GLU TYR TYR THR SEQRES 9 B 263 LYS LYS GLY CYS ASP LEU ILE SER THR PRO ASP GLN ASP SEQRES 10 B 263 HIS THR ASP PHE THR LYS CYS LEU GLN VAL LEU GLN ARG SEQRES 11 B 263 LYS ILE GLU GLU LYS GLU LEU GLN VAL ASP VAL ILE VAL SEQRES 12 B 263 THR LEU GLY GLY LEU GLY GLY ARG PHE ASP GLN ILE MET SEQRES 13 B 263 ALA SER VAL ASN THR LEU PHE GLN ALA THR HIS ILE THR SEQRES 14 B 263 PRO VAL PRO ILE ILE ILE ILE GLN LYS ASP SER LEU ILE SEQRES 15 B 263 TYR LEU LEU GLN PRO GLY LYS HIS ARG LEU HIS VAL ASP SEQRES 16 B 263 THR GLY MET GLU GLY SER TRP CYS GLY LEU ILE PRO VAL SEQRES 17 B 263 GLY GLN PRO CYS ASN GLN VAL THR THR THR GLY LEU LYS SEQRES 18 B 263 TRP ASN LEU THR ASN ASP VAL LEU GLY PHE GLY THR LEU SEQRES 19 B 263 VAL SER THR SER ASN THR TYR ASP GLY SER GLY LEU VAL SEQRES 20 B 263 THR VAL GLU THR ASP HIS PRO LEU LEU TRP THR MET ALA SEQRES 21 B 263 ILE LYS SER HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 612 5 HET SO4 A 613 5 HET SO4 A 616 5 HET VIB A 502 18 HET SO4 B 606 5 HET SO4 B 607 5 HET SO4 B 608 5 HET SO4 B 611 5 HET SO4 B 615 5 HET VIB B 501 18 HETNAM SO4 SULFATE ION HETNAM VIB 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY- HETNAM 2 VIB ETHYL)-4-METHYL-THIAZOL-3-IUM HETSYN VIB THIAMIN; VITAMIN B1 FORMUL 3 SO4 14(O4 S 2-) FORMUL 12 VIB 2(C12 H17 N4 O S 1+) FORMUL 19 HOH *413(H2 O) HELIX 1 1 LEU A 28 LEU A 32 5 5 HELIX 2 2 ARG A 51 ALA A 59 1 9 HELIX 3 3 GLY A 67 LEU A 75 1 9 HELIX 4 4 GLU A 79 PHE A 83 5 5 HELIX 5 5 ARG A 96 LYS A 106 1 11 HELIX 6 6 THR A 119 LYS A 135 1 17 HELIX 7 7 ARG A 151 ALA A 165 1 15 HELIX 8 8 THR A 166 ILE A 168 5 3 HELIX 9 9 LEU B 28 LEU B 32 5 5 HELIX 10 10 ARG B 51 ALA B 59 1 9 HELIX 11 11 GLY B 67 THR B 76 1 10 HELIX 12 12 GLU B 79 PHE B 83 5 5 HELIX 13 13 ASP B 91 ILE B 95 5 5 HELIX 14 14 ARG B 96 LYS B 106 1 11 HELIX 15 15 THR B 119 LYS B 135 1 17 HELIX 16 16 ARG B 151 THR B 169 1 19 SHEET 1 A 5 HIS A 23 PHE A 25 0 SHEET 2 A 5 GLY A 188 HIS A 193 1 O LYS A 189 N HIS A 23 SHEET 3 A 5 LEU A 246 THR A 251 -1 O VAL A 247 N LEU A 192 SHEET 4 A 5 CYS A 212 THR A 218 -1 O THR A 216 N GLU A 250 SHEET 5 A 5 ASP A 227 LEU A 229 -1 N ASP A 227 O VAL A 215 SHEET 1 B10 ASP A 109 SER A 112 0 SHEET 2 B10 PHE A 87 GLY A 90 1 O VAL A 88 N ILE A 111 SHEET 3 B10 LEU A 61 ALA A 65 1 O ARG A 62 N PHE A 87 SHEET 4 B10 TYR A 39 VAL A 43 1 O TYR A 39 N LEU A 61 SHEET 5 B10 VAL A 141 LEU A 145 1 O VAL A 141 N CYS A 40 SHEET 6 B10 ILE A 173 GLN A 177 1 O ILE A 174 N THR A 144 SHEET 7 B10 SER A 180 LEU A 185 -1 N SER A 180 O GLN A 177 SHEET 8 B10 LEU A 255 ILE A 261 -1 O LEU A 255 N LEU A 185 SHEET 9 B10 GLU A 199 ILE A 206 -1 N GLY A 200 O ALA A 260 SHEET 10 B10 SER A 236 ASN A 239 -1 N SER A 236 O LEU A 205 SHEET 1 C 5 GLU B 22 PHE B 25 0 SHEET 2 C 5 GLY B 188 HIS B 193 1 O LYS B 189 N HIS B 23 SHEET 3 C 5 LEU B 246 THR B 251 -1 O VAL B 247 N LEU B 192 SHEET 4 C 5 CYS B 212 THR B 218 -1 O THR B 216 N GLU B 250 SHEET 5 C 5 ASP B 227 LEU B 229 -1 N ASP B 227 O VAL B 215 SHEET 1 D10 ASP B 109 SER B 112 0 SHEET 2 D10 PHE B 87 GLY B 90 1 N VAL B 88 O ASP B 109 SHEET 3 D10 LEU B 61 ALA B 65 1 O ARG B 62 N PHE B 87 SHEET 4 D10 TYR B 39 VAL B 43 1 O TYR B 39 N LEU B 61 SHEET 5 D10 VAL B 141 LEU B 145 1 O VAL B 141 N CYS B 40 SHEET 6 D10 ILE B 173 GLN B 177 1 O ILE B 174 N THR B 144 SHEET 7 D10 SER B 180 LEU B 185 -1 N SER B 180 O GLN B 177 SHEET 8 D10 LEU B 255 ILE B 261 -1 O LEU B 255 N LEU B 185 SHEET 9 D10 GLU B 199 ILE B 206 -1 N GLY B 200 O ALA B 260 SHEET 10 D10 SER B 236 ASN B 239 -1 O SER B 236 N LEU B 205 SITE 1 AC1 4 GLY A 78 GLU A 79 ARG A 80 HOH A 691 SITE 1 AC2 3 LYS A 105 LYS A 106 HOH A 753 SITE 1 AC3 7 ASP A 117 HIS A 118 THR A 119 THR A 122 SITE 2 AC3 7 ASN A 160 GLN A 164 HOH A 650 SITE 1 AC4 3 ASN A 45 HOH A 668 HOH A 745 SITE 1 AC5 6 GLY B 78 GLU B 79 ARG B 80 TYR B 102 SITE 2 AC5 6 HOH B 761 HOH B 809 SITE 1 AC6 9 HIS B 118 THR B 119 THR B 122 ASN B 160 SITE 2 AC6 9 THR B 161 GLN B 164 HOH B 617 HOH B 698 SITE 3 AC6 9 HOH B 786 SITE 1 AC7 4 ASN B 45 HOH B 635 HOH B 677 HOH B 708 SITE 1 AC8 3 SER A 238 VIB A 502 ARG B 151 SITE 1 AC9 4 ARG A 151 HOH A 752 SER B 238 VIB B 501 SITE 1 BC1 5 GLY B 200 SER B 201 LYS B 262 SER B 263 SITE 2 BC1 5 HOH B 644 SITE 1 BC2 5 GLY A 200 SER A 201 LYS A 262 SER A 263 SITE 2 BC2 5 HOH A 623 SITE 1 BC3 7 GLN A 46 GLY A 150 HOH A 648 HOH A 713 SITE 2 BC3 7 HOH A 715 HOH A 729 HOH A 772 SITE 1 BC4 4 ALA B 24 ARG B 191 HIS B 193 HOH B 781 SITE 1 BC5 8 ASN A 213 HIS A 253 HOH A 676 HOH A 747 SITE 2 BC5 8 HOH A 756 PRO B 33 GLY B 35 LYS B 58 SITE 1 BC6 9 GLN A 116 ASP A 117 SO4 A 610 TRP B 222 SITE 2 BC6 9 SER B 236 THR B 237 SER B 238 ASN B 239 SITE 3 BC6 9 HOH B 616 SITE 1 BC7 12 TRP A 222 SER A 236 THR A 237 SER A 238 SITE 2 BC7 12 ASN A 239 SO4 A 609 HOH A 631 HOH A 644 SITE 3 BC7 12 GLN B 116 ASP B 117 HIS B 118 HOH B 786 CRYST1 89.800 89.800 141.100 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011136 0.006429 0.000000 0.00000 SCALE2 0.000000 0.012859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007087 0.00000