HEADER HORMONE RECEPTOR 28-SEP-98 1IGR TITLE TYPE 1 INSULIN-LIKE GROWTH FACTOR RECEPTOR (DOMAINS 1-3) CAVEAT 1IGR NAG C 2 HAS WRONG CHIRALITY AT ATOM C2 NAG A 479A HAS WRONG CAVEAT 2 1IGR CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN-LIKE GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-492; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLACENTA; SOURCE 6 CELLULAR_LOCATION: CYTOPLASMIC MEMBRANE; SOURCE 7 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: LEC8; SOURCE 11 EXPRESSION_SYSTEM_COLLECTION: CRL:1737; SOURCE 12 EXPRESSION_SYSTEM_CELLULAR_LOCATION: SECRETED; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PEE14/IGF-1R/462; SOURCE 14 OTHER_DETAILS: LARGE SCALE CELL CULTURE IN A CELLGEN PLUS BIOREACTOR KEYWDS HORMONE RECEPTOR, INSULIN RECEPTOR FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.P.J.GARRETT,N.M.MCKERN,M.LOU,M.J.FRENKEL,J.D.BENTLEY,G.O.LOVRECZ, AUTHOR 2 T.C.ELLEMAN,L.J.COSGROVE,C.W.WARD REVDAT 8 27-DEC-23 1IGR 1 HETSYN REVDAT 7 29-JUL-20 1IGR 1 CAVEAT COMPND REMARK HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 04-APR-18 1IGR 1 REMARK REVDAT 5 13-JUL-11 1IGR 1 VERSN REVDAT 4 31-MAR-10 1IGR 1 COMPND REVDAT 3 24-FEB-09 1IGR 1 VERSN REVDAT 2 01-APR-03 1IGR 1 JRNL REVDAT 1 27-SEP-99 1IGR 0 JRNL AUTH T.P.GARRETT,N.M.MCKERN,M.LOU,M.J.FRENKEL,J.D.BENTLEY, JRNL AUTH 2 G.O.LOVRECZ,T.C.ELLEMAN,L.J.COSGROVE,C.W.WARD JRNL TITL CRYSTAL STRUCTURE OF THE FIRST THREE DOMAINS OF THE TYPE-1 JRNL TITL 2 INSULIN-LIKE GROWTH FACTOR RECEPTOR. JRNL REF NATURE V. 394 395 1998 JRNL REFN ISSN 0028-0836 JRNL PMID 9690478 JRNL DOI 10.1038/28668 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.M.MCKERN,M.LOU,M.J.FRENKEL,A.VERKUYLEN,J.D.BENTLEY, REMARK 1 AUTH 2 G.O.LOVRECZ,N.IVANCIC,T.C.ELLEMAN,T.P.J.GARRETT, REMARK 1 AUTH 3 L.J.COSGROVE,C.W.WARD REMARK 1 TITL CRYSTALLIZATION OF THE FIRST THREE DOMAINS OF THE HUMAN REMARK 1 TITL 2 INSULIN-LIKE GROWTH FACTOR-1 RECEPTOR REMARK 1 REF PROTEIN SCI. V. 6 2663 1997 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 26963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2693 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.12200 REMARK 3 B22 (A**2) : -13.10000 REMARK 3 B33 (A**2) : 0.97600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.048 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.051 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.038 ; 0.040 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.149 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.219 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.296 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.226 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 6.000 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 24.100; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 28.100; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.721 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.407 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.903 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.046 ; 7.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 PLANAR RESTRAIN FOR PEPTIDES, RMS=0.0384, SIGMA=0.04, AROMATIC REMARK 3 PLANES RMS= REMARK 3 0.0097, SIGMA=0.015 REMARK 3 REMARK 3 POSITIONS OF ATOMS WITH B GREATER THAN 75 ARE NOT RELIABLE. REMARK 3 ATOMS HAVE BEEN GIVEN OCCUPANCY OF 0.01 OR OMITTED IF NO REMARK 3 ELECTRON DENSITY WAS OBSERVED. REMARK 3 REMARK 3 FOR RESIDUES 457-459 THE DENSITY WAS NOTABLY WEAKER THAN REMARK 3 THE ADJACENT RESIDUES. THIS SECTION HAS BEEN INCLUDED WITH REMARK 3 OCCUPANCY OF 0.5 REMARK 4 REMARK 4 1IGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000007214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE M18X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE, PROTEIN, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 2.0 M REMARK 280 AMMONIUM SULFATE, 100 MM HEPES, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.69500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.14500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.14500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.69500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 460 REMARK 465 ASP A 461 REMARK 465 VAL A 462 REMARK 465 ASP A 463 REMARK 465 ASP A 464 REMARK 465 ASP A 465 REMARK 465 ASP A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CD OE1 OE2 REMARK 470 ARG A 41 NE CZ NH1 NH2 REMARK 470 TYR A 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 159 CD CE NZ REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 406 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 412 CD CE NZ REMARK 470 SER A 443 OG REMARK 470 GLU A 459 CG CD OE1 OE2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 NAG B 2 O2 FUC B 3 2.09 REMARK 500 O4 NAG B 1 O5 NAG B 2 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 9 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 10 NH1 - CZ - NH2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 18 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU A 26 OE1 - CD - OE2 ANGL. DEV. = -12.9 DEGREES REMARK 500 GLU A 26 CG - CD - OE2 ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU A 53 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 59 CD - NE - CZ ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 77 CD - NE - CZ ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 77 NH1 - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 PHE A 90 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU A 91 OE1 - CD - OE2 ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 112 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 112 NH1 - CZ - NH2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 LEU A 131 CA - CB - CG ANGL. DEV. = 30.9 DEGREES REMARK 500 VAL A 140 CA - CB - CG1 ANGL. DEV. = 11.9 DEGREES REMARK 500 TYR A 173 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 173 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET A 184 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 VAL A 219 CG1 - CB - CG2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 222 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TYR A 224 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 224 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 225 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 231 CG1 - CB - CG2 ANGL. DEV. = -13.0 DEGREES REMARK 500 VAL A 231 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 VAL A 247 CG1 - CB - CG2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 248 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 248 CB - CG - OD2 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 250 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 250 OD1 - CG - OD2 ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP A 250 CB - CG - OD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 70 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 -150.45 -80.58 REMARK 500 ARG A 10 156.14 173.45 REMARK 500 ASN A 11 -46.64 68.14 REMARK 500 ASP A 39 -80.48 -57.71 REMARK 500 ARG A 41 -142.83 -72.28 REMARK 500 ARG A 44 120.83 -176.94 REMARK 500 GLU A 53 -105.27 -122.06 REMARK 500 SER A 65 133.62 179.79 REMARK 500 PHE A 70 67.16 -114.83 REMARK 500 PRO A 71 -6.61 -59.50 REMARK 500 TYR A 83 78.79 43.83 REMARK 500 ASN A 84 -14.92 70.08 REMARK 500 ASN A 94 -20.44 86.50 REMARK 500 LEU A 100 64.49 -55.57 REMARK 500 ALA A 110 -165.51 -116.86 REMARK 500 LYS A 115 72.46 18.26 REMARK 500 ASN A 116 76.00 -117.30 REMARK 500 VAL A 140 139.08 -177.53 REMARK 500 GLU A 157 -75.81 -72.76 REMARK 500 GLU A 158 43.97 156.38 REMARK 500 LYS A 159 75.02 -156.25 REMARK 500 SER A 208 -176.68 -179.47 REMARK 500 ASP A 213 19.21 36.57 REMARK 500 HIS A 223 -114.46 -113.16 REMARK 500 TYR A 226 115.24 -164.02 REMARK 500 ASN A 237 13.79 58.21 REMARK 500 TRP A 244 -1.04 -143.70 REMARK 500 SER A 260 58.80 -96.40 REMARK 500 GLU A 295 55.87 71.55 REMARK 500 SER A 313 -173.94 -179.02 REMARK 500 ASN A 338 -85.70 -58.10 REMARK 500 ASN A 339 83.15 -150.61 REMARK 500 ALA A 341 -5.04 -158.40 REMARK 500 PHE A 347 -27.26 -145.16 REMARK 500 ALA A 365 -7.46 -53.68 REMARK 500 ASN A 387 48.03 82.26 REMARK 500 LEU A 401 -95.63 -89.55 REMARK 500 TRP A 404 35.10 -63.17 REMARK 500 ASP A 405 -44.62 -146.82 REMARK 500 PHE A 420 41.53 71.65 REMARK 500 SER A 443 -164.38 -70.91 REMARK 500 ARG A 455 50.32 -116.98 REMARK 500 CYS A 458 -111.89 -103.02 REMARK 500 GLU A 468 -45.06 -172.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 8 10.25 REMARK 500 LEU A 19 -12.34 REMARK 500 PHE A 45 -13.55 REMARK 500 VAL A 50 12.62 REMARK 500 LEU A 100 -11.22 REMARK 500 LEU A 129 -10.58 REMARK 500 CYS A 205 10.56 REMARK 500 VAL A 219 -11.75 REMARK 500 THR A 238 14.61 REMARK 500 GLN A 287 -12.52 REMARK 500 SER A 288 10.06 REMARK 500 ILE A 292 10.07 REMARK 500 ASN A 346 12.29 REMARK 500 HIS A 364 -13.60 REMARK 500 GLU A 382 16.14 REMARK 500 LYS A 444 -12.05 REMARK 500 GLY A 453 -10.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 1IGR A 1 462 UNP P08069 IG1R_HUMAN 31 492 SEQRES 1 A 478 GLU ILE CYS GLY PRO GLY ILE ASP ILE ARG ASN ASP TYR SEQRES 2 A 478 GLN GLN LEU LYS ARG LEU GLU ASN CYS THR VAL ILE GLU SEQRES 3 A 478 GLY TYR LEU HIS ILE LEU LEU ILE SER LYS ALA GLU ASP SEQRES 4 A 478 TYR ARG SER TYR ARG PHE PRO LYS LEU THR VAL ILE THR SEQRES 5 A 478 GLU TYR LEU LEU LEU PHE ARG VAL ALA GLY LEU GLU SER SEQRES 6 A 478 LEU GLY ASP LEU PHE PRO ASN LEU THR VAL ILE ARG GLY SEQRES 7 A 478 TRP LYS LEU PHE TYR ASN TYR ALA LEU VAL ILE PHE GLU SEQRES 8 A 478 MET THR ASN LEU LYS ASP ILE GLY LEU TYR ASN LEU ARG SEQRES 9 A 478 ASN ILE THR ARG GLY ALA ILE ARG ILE GLU LYS ASN ALA SEQRES 10 A 478 ASP LEU CYS TYR LEU SER THR VAL ASP TRP SER LEU ILE SEQRES 11 A 478 LEU ASP ALA VAL SER ASN ASN TYR ILE VAL GLY ASN LYS SEQRES 12 A 478 PRO PRO LYS GLU CYS GLY ASP LEU CYS PRO GLY THR MET SEQRES 13 A 478 GLU GLU LYS PRO MET CYS GLU LYS THR THR ILE ASN ASN SEQRES 14 A 478 GLU TYR ASN TYR ARG CYS TRP THR THR ASN ARG CYS GLN SEQRES 15 A 478 LYS MET CYS PRO SER THR CYS GLY LYS ARG ALA CYS THR SEQRES 16 A 478 GLU ASN ASN GLU CYS CYS HIS PRO GLU CYS LEU GLY SER SEQRES 17 A 478 CYS SER ALA PRO ASP ASN ASP THR ALA CYS VAL ALA CYS SEQRES 18 A 478 ARG HIS TYR TYR TYR ALA GLY VAL CYS VAL PRO ALA CYS SEQRES 19 A 478 PRO PRO ASN THR TYR ARG PHE GLU GLY TRP ARG CYS VAL SEQRES 20 A 478 ASP ARG ASP PHE CYS ALA ASN ILE LEU SER ALA GLU SER SEQRES 21 A 478 SER ASP SER GLU GLY PHE VAL ILE HIS ASP GLY GLU CYS SEQRES 22 A 478 MET GLN GLU CYS PRO SER GLY PHE ILE ARG ASN GLY SER SEQRES 23 A 478 GLN SER MET TYR CYS ILE PRO CYS GLU GLY PRO CYS PRO SEQRES 24 A 478 LYS VAL CYS GLU GLU GLU LYS LYS THR LYS THR ILE ASP SEQRES 25 A 478 SER VAL THR SER ALA GLN MET LEU GLN GLY CYS THR ILE SEQRES 26 A 478 PHE LYS GLY ASN LEU LEU ILE ASN ILE ARG ARG GLY ASN SEQRES 27 A 478 ASN ILE ALA SER GLU LEU GLU ASN PHE MET GLY LEU ILE SEQRES 28 A 478 GLU VAL VAL THR GLY TYR VAL LYS ILE ARG HIS SER HIS SEQRES 29 A 478 ALA LEU VAL SER LEU SER PHE LEU LYS ASN LEU ARG LEU SEQRES 30 A 478 ILE LEU GLY GLU GLU GLN LEU GLU GLY ASN TYR SER PHE SEQRES 31 A 478 TYR VAL LEU ASP ASN GLN ASN LEU GLN GLN LEU TRP ASP SEQRES 32 A 478 TRP ASP HIS ARG ASN LEU THR ILE LYS ALA GLY LYS MET SEQRES 33 A 478 TYR PHE ALA PHE ASN PRO LYS LEU CYS VAL SER GLU ILE SEQRES 34 A 478 TYR ARG MET GLU GLU VAL THR GLY THR LYS GLY ARG GLN SEQRES 35 A 478 SER LYS GLY ASP ILE ASN THR ARG ASN ASN GLY GLU ARG SEQRES 36 A 478 ALA SER CYS GLU SER ASP VAL ASP ASP ASP ASP LYS GLU SEQRES 37 A 478 GLN LYS LEU ILE SER GLU GLU ASP LEU ASN MODRES 1IGR ASN A 21 ASN GLYCOSYLATION SITE MODRES 1IGR ASN A 105 ASN GLYCOSYLATION SITE MODRES 1IGR ASN A 214 ASN GLYCOSYLATION SITE MODRES 1IGR ASN A 284 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET NAG A 479A 14 HET NAG A 483A 14 HET SO4 A 493 5 HET SO4 A 494 5 HET SO4 A 495 5 HET SO4 A 496 5 HET SO4 A 497 5 HET SO4 A 498 5 HET SO4 A 499 5 HET SO4 A 500 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 6 SO4 8(O4 S 2-) FORMUL 14 HOH *48(H2 O) HELIX 1 1 ASP A 12 GLU A 20 5 9 HELIX 2 2 SER A 65 LEU A 69 5 5 HELIX 3 3 ASP A 126 LEU A 131 1 6 HELIX 4 4 ALA A 133 ASN A 137 5 5 HELIX 5 5 PRO A 144 GLY A 149 1 6 HELIX 6 6 PRO A 186 GLY A 190 5 5 HELIX 7 7 ASP A 248 ASN A 254 1 7 HELIX 8 8 VAL A 314 GLN A 318 5 5 HELIX 9 9 LEU A 344 GLY A 349 1 6 HELIX 10 10 CYS A 425 GLY A 437 1 13 HELIX 11 11 SER A 473 ASN A 478 5 6 SHEET 1 A 5 ILE A 2 CYS A 3 0 SHEET 2 A 5 VAL A 24 ILE A 25 1 O VAL A 24 N CYS A 3 SHEET 3 A 5 VAL A 50 ILE A 51 1 O VAL A 50 N ILE A 25 SHEET 4 A 5 VAL A 75 ILE A 76 1 O VAL A 75 N ILE A 51 SHEET 5 A 5 ASN A 105 ILE A 106 1 O ASN A 105 N ILE A 76 SHEET 1 B 6 ILE A 7 ARG A 10 0 SHEET 2 B 6 LEU A 29 SER A 35 1 O HIS A 30 N ILE A 9 SHEET 3 B 6 LEU A 55 ALA A 61 1 O LEU A 56 N ILE A 31 SHEET 4 B 6 TYR A 85 PHE A 90 1 O ALA A 86 N LEU A 55 SHEET 5 B 6 ALA A 110 GLU A 114 1 O ALA A 110 N ALA A 86 SHEET 6 B 6 TYR A 138 VAL A 140 1 N TYR A 138 O ILE A 111 SHEET 1 C 2 LYS A 164 THR A 166 0 SHEET 2 C 2 TYR A 171 TYR A 173 -1 N ASN A 172 O THR A 165 SHEET 1 D 2 CYS A 205 CYS A 209 0 SHEET 2 D 2 CYS A 218 CYS A 221 -1 N VAL A 219 O SER A 208 SHEET 1 E 2 TYR A 224 TYR A 225 0 SHEET 2 E 2 CYS A 230 VAL A 231 -1 N VAL A 231 O TYR A 224 SHEET 1 F 2 TYR A 239 PHE A 241 0 SHEET 2 F 2 ARG A 245 VAL A 247 -1 O ARG A 245 N PHE A 241 SHEET 1 G 2 VAL A 267 HIS A 269 0 SHEET 2 G 2 GLU A 272 MET A 274 -1 O GLU A 272 N HIS A 269 SHEET 1 H 2 PHE A 281 ARG A 283 0 SHEET 2 H 2 CYS A 291 PRO A 293 -1 O ILE A 292 N ILE A 282 SHEET 1 I 5 VAL A 301 ILE A 311 0 SHEET 2 I 5 ILE A 325 ILE A 332 1 O ILE A 325 N CYS A 302 SHEET 3 I 5 VAL A 353 VAL A 354 1 O VAL A 353 N PHE A 326 SHEET 4 I 5 LEU A 377 ILE A 378 1 O LEU A 377 N VAL A 354 SHEET 5 I 5 THR A 410 ILE A 411 1 O THR A 410 N ILE A 378 SHEET 1 I1 5 VAL A 301 ILE A 311 0 SHEET 2 I1 5 ILE A 325 ILE A 332 1 O ILE A 325 N CYS A 302 SHEET 3 I1 5 VAL A 358 ARG A 361 1 O LYS A 359 N ILE A 332 SHEET 4 I1 5 TYR A 388 LEU A 393 1 O SER A 389 N VAL A 358 SHEET 5 I1 5 LYS A 415 ALA A 419 1 O LYS A 415 N SER A 389 SSBOND 1 CYS A 3 CYS A 22 1555 1555 1.99 SSBOND 2 CYS A 120 CYS A 148 1555 1555 2.08 SSBOND 3 CYS A 152 CYS A 175 1555 1555 2.08 SSBOND 4 CYS A 162 CYS A 181 1555 1555 2.05 SSBOND 5 CYS A 185 CYS A 194 1555 1555 2.02 SSBOND 6 CYS A 189 CYS A 200 1555 1555 2.09 SSBOND 7 CYS A 201 CYS A 209 1555 1555 2.07 SSBOND 8 CYS A 205 CYS A 218 1555 1555 2.06 SSBOND 9 CYS A 221 CYS A 230 1555 1555 2.12 SSBOND 10 CYS A 234 CYS A 246 1555 1555 1.99 SSBOND 11 CYS A 252 CYS A 273 1555 1555 2.12 SSBOND 12 CYS A 277 CYS A 291 1555 1555 2.08 SSBOND 13 CYS A 294 CYS A 298 1555 1555 2.01 SSBOND 14 CYS A 302 CYS A 323 1555 1555 2.01 SSBOND 15 CYS A 425 CYS A 458 1555 1555 2.05 LINK ND2 ASN A 21 C1 NAG A 479A 1555 1555 1.50 LINK ND2 ASN A 105 C1 NAG B 1 1555 1555 1.48 LINK ND2 ASN A 214 C1 NAG A 483A 1555 1555 1.50 LINK ND2 ASN A 284 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.34 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O6 NAG C 1 C1 FUC C 5 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.40 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.37 CISPEP 1 GLY A 4 PRO A 5 0 -7.97 CRYST1 77.390 99.720 120.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008313 0.00000