data_1IH6 # _entry.id 1IH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IH6 pdb_00001ih6 10.2210/pdb1ih6/pdb NDB AD0024 ? ? RCSB RCSB013262 ? ? WWPDB D_1000013262 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-06-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IH6 _pdbx_database_status.recvd_initial_deposition_date 2001-04-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1IH1 'Crystal structure of the B-DNA hexamer GGCGCC resolved to 2.0 angstrom resolution' unspecified PDB 1IH2 'Crystal structure of GGBr5CGBr5CC' unspecified PDB 1IH3 'Multi-conformation crystal structure of GGm5CGm5CC' unspecified PDB 1IH4 'Multi-conformation crystal structure of GGm5CGCC' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vargason, J.M.' 1 'Henderson, K.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'A crystallographic map of the transition from B-DNA to A-DNA.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 98 _citation.page_first 7265 _citation.page_last 7270 _citation.year 2001 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11390969 _citation.pdbx_database_id_DOI 10.1073/pnas.121176898 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vargason, J.M.' 1 ? primary 'Henderson, K.' 2 ? primary 'Ho, P.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*(CBR)P*GP*CP*C)-3'" 1889.101 8 ? ? ? ? 2 water nat water 18.015 234 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(CBR)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGCGCC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 CBR n 1 4 DG n 1 5 DC n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 CBR 3 3 3 CBR BRO A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 CBR 3 9 9 CBR BRO B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DC 6 12 12 DC C B . n C 1 1 DG 1 13 13 DG G C . n C 1 2 DG 2 14 14 DG G C . n C 1 3 CBR 3 15 15 CBR BRO C . n C 1 4 DG 4 16 16 DG G C . n C 1 5 DC 5 17 17 DC C C . n C 1 6 DC 6 18 18 DC C C . n D 1 1 DG 1 19 19 DG G D . n D 1 2 DG 2 20 20 DG G D . n D 1 3 CBR 3 21 21 CBR BRO D . n D 1 4 DG 4 22 22 DG G D . n D 1 5 DC 5 23 23 DC C D . n D 1 6 DC 6 24 24 DC C D . n E 1 1 DG 1 25 25 DG G E . n E 1 2 DG 2 26 26 DG G E . n E 1 3 CBR 3 27 27 CBR BRO E . n E 1 4 DG 4 28 28 DG G E . n E 1 5 DC 5 29 29 DC C E . n E 1 6 DC 6 30 30 DC C E . n F 1 1 DG 1 31 31 DG G F . n F 1 2 DG 2 32 32 DG G F . n F 1 3 CBR 3 33 33 CBR BRO F . n F 1 4 DG 4 34 34 DG G F . n F 1 5 DC 5 35 35 DC C F . n F 1 6 DC 6 36 36 DC C F . n G 1 1 DG 1 37 37 DG G G . n G 1 2 DG 2 38 38 DG G G . n G 1 3 CBR 3 39 39 CBR BRO G . n G 1 4 DG 4 40 40 DG G G . n G 1 5 DC 5 41 41 DC C G . n G 1 6 DC 6 42 42 DC C G . n H 1 1 DG 1 43 43 DG G H . n H 1 2 DG 2 44 44 DG G H . n H 1 3 CBR 3 45 45 CBR BRO H . n H 1 4 DG 4 46 46 DG G H . n H 1 5 DC 5 47 47 DC C H . n H 1 6 DC 6 48 48 DC C H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HOH 1 49 49 HOH HOH A . I 2 HOH 2 50 50 HOH HOH A . I 2 HOH 3 51 51 HOH HOH A . I 2 HOH 4 52 52 HOH HOH A . I 2 HOH 5 53 53 HOH HOH A . I 2 HOH 6 54 54 HOH HOH A . I 2 HOH 7 55 55 HOH HOH A . I 2 HOH 8 56 56 HOH HOH A . I 2 HOH 9 57 57 HOH HOH A . I 2 HOH 10 58 58 HOH HOH A . I 2 HOH 11 59 59 HOH HOH A . I 2 HOH 12 60 60 HOH HOH A . I 2 HOH 13 61 61 HOH HOH A . I 2 HOH 14 62 62 HOH HOH A . I 2 HOH 15 63 63 HOH HOH A . I 2 HOH 16 64 64 HOH HOH A . I 2 HOH 17 65 65 HOH HOH A . I 2 HOH 18 66 66 HOH HOH A . I 2 HOH 19 67 67 HOH HOH A . I 2 HOH 20 68 68 HOH HOH A . I 2 HOH 21 69 69 HOH HOH A . I 2 HOH 22 109 109 HOH HOH A . I 2 HOH 23 183 183 HOH HOH A . I 2 HOH 24 186 186 HOH HOH A . I 2 HOH 25 187 187 HOH HOH A . I 2 HOH 26 214 214 HOH HOH A . I 2 HOH 27 217 217 HOH HOH A . I 2 HOH 28 218 218 HOH HOH A . I 2 HOH 29 233 233 HOH HOH A . I 2 HOH 30 244 244 HOH HOH A . I 2 HOH 31 248 248 HOH HOH A . I 2 HOH 32 250 250 HOH HOH A . I 2 HOH 33 260 260 HOH HOH A . I 2 HOH 34 261 261 HOH HOH A . I 2 HOH 35 266 266 HOH HOH A . I 2 HOH 36 267 267 HOH HOH A . I 2 HOH 37 282 282 HOH HOH A . J 2 HOH 1 72 72 HOH HOH B . J 2 HOH 2 73 73 HOH HOH B . J 2 HOH 3 74 74 HOH HOH B . J 2 HOH 4 75 75 HOH HOH B . J 2 HOH 5 76 76 HOH HOH B . J 2 HOH 6 77 77 HOH HOH B . J 2 HOH 7 78 78 HOH HOH B . J 2 HOH 8 79 79 HOH HOH B . J 2 HOH 9 80 80 HOH HOH B . J 2 HOH 10 81 81 HOH HOH B . J 2 HOH 11 82 82 HOH HOH B . J 2 HOH 12 83 83 HOH HOH B . J 2 HOH 13 84 84 HOH HOH B . J 2 HOH 14 85 85 HOH HOH B . J 2 HOH 15 86 86 HOH HOH B . J 2 HOH 16 87 87 HOH HOH B . J 2 HOH 17 123 123 HOH HOH B . J 2 HOH 18 188 188 HOH HOH B . J 2 HOH 19 189 189 HOH HOH B . J 2 HOH 20 190 190 HOH HOH B . J 2 HOH 21 191 191 HOH HOH B . J 2 HOH 22 212 212 HOH HOH B . J 2 HOH 23 213 213 HOH HOH B . J 2 HOH 24 226 226 HOH HOH B . J 2 HOH 25 230 230 HOH HOH B . J 2 HOH 26 234 234 HOH HOH B . J 2 HOH 27 235 235 HOH HOH B . J 2 HOH 28 238 238 HOH HOH B . J 2 HOH 29 241 241 HOH HOH B . J 2 HOH 30 242 242 HOH HOH B . J 2 HOH 31 249 249 HOH HOH B . J 2 HOH 32 255 255 HOH HOH B . J 2 HOH 33 271 271 HOH HOH B . J 2 HOH 34 272 272 HOH HOH B . K 2 HOH 1 71 71 HOH HOH C . K 2 HOH 2 88 88 HOH HOH C . K 2 HOH 3 89 89 HOH HOH C . K 2 HOH 4 90 90 HOH HOH C . K 2 HOH 5 91 91 HOH HOH C . K 2 HOH 6 92 92 HOH HOH C . K 2 HOH 7 93 93 HOH HOH C . K 2 HOH 8 94 94 HOH HOH C . K 2 HOH 9 95 95 HOH HOH C . K 2 HOH 10 96 96 HOH HOH C . K 2 HOH 11 97 97 HOH HOH C . K 2 HOH 12 98 98 HOH HOH C . K 2 HOH 13 99 99 HOH HOH C . K 2 HOH 14 100 100 HOH HOH C . K 2 HOH 15 101 101 HOH HOH C . K 2 HOH 16 130 130 HOH HOH C . K 2 HOH 17 177 177 HOH HOH C . K 2 HOH 18 182 182 HOH HOH C . K 2 HOH 19 185 185 HOH HOH C . K 2 HOH 20 192 192 HOH HOH C . K 2 HOH 21 193 193 HOH HOH C . K 2 HOH 22 194 194 HOH HOH C . K 2 HOH 23 195 195 HOH HOH C . K 2 HOH 24 210 210 HOH HOH C . K 2 HOH 25 243 243 HOH HOH C . K 2 HOH 26 268 268 HOH HOH C . K 2 HOH 27 273 273 HOH HOH C . K 2 HOH 28 276 276 HOH HOH C . L 2 HOH 1 70 70 HOH HOH D . L 2 HOH 2 103 103 HOH HOH D . L 2 HOH 3 104 104 HOH HOH D . L 2 HOH 4 105 105 HOH HOH D . L 2 HOH 5 106 106 HOH HOH D . L 2 HOH 6 107 107 HOH HOH D . L 2 HOH 7 108 108 HOH HOH D . L 2 HOH 8 110 110 HOH HOH D . L 2 HOH 9 111 111 HOH HOH D . L 2 HOH 10 112 112 HOH HOH D . L 2 HOH 11 113 113 HOH HOH D . L 2 HOH 12 114 114 HOH HOH D . L 2 HOH 13 115 115 HOH HOH D . L 2 HOH 14 116 116 HOH HOH D . L 2 HOH 15 117 117 HOH HOH D . L 2 HOH 16 118 118 HOH HOH D . L 2 HOH 17 119 119 HOH HOH D . L 2 HOH 18 120 120 HOH HOH D . L 2 HOH 19 121 121 HOH HOH D . L 2 HOH 20 122 122 HOH HOH D . L 2 HOH 21 196 196 HOH HOH D . L 2 HOH 22 197 197 HOH HOH D . L 2 HOH 23 198 198 HOH HOH D . L 2 HOH 24 199 199 HOH HOH D . L 2 HOH 25 200 200 HOH HOH D . L 2 HOH 26 211 211 HOH HOH D . L 2 HOH 27 221 221 HOH HOH D . L 2 HOH 28 222 222 HOH HOH D . L 2 HOH 29 225 225 HOH HOH D . L 2 HOH 30 229 229 HOH HOH D . L 2 HOH 31 237 237 HOH HOH D . L 2 HOH 32 239 239 HOH HOH D . L 2 HOH 33 251 251 HOH HOH D . L 2 HOH 34 263 263 HOH HOH D . L 2 HOH 35 275 275 HOH HOH D . L 2 HOH 36 277 277 HOH HOH D . M 2 HOH 1 102 102 HOH HOH E . M 2 HOH 2 124 124 HOH HOH E . M 2 HOH 3 125 125 HOH HOH E . M 2 HOH 4 126 126 HOH HOH E . M 2 HOH 5 127 127 HOH HOH E . M 2 HOH 6 128 128 HOH HOH E . M 2 HOH 7 129 129 HOH HOH E . M 2 HOH 8 131 131 HOH HOH E . M 2 HOH 9 132 132 HOH HOH E . M 2 HOH 10 133 133 HOH HOH E . M 2 HOH 11 134 134 HOH HOH E . M 2 HOH 12 135 135 HOH HOH E . M 2 HOH 13 136 136 HOH HOH E . M 2 HOH 14 137 137 HOH HOH E . M 2 HOH 15 138 138 HOH HOH E . M 2 HOH 16 139 139 HOH HOH E . M 2 HOH 17 140 140 HOH HOH E . M 2 HOH 18 150 150 HOH HOH E . M 2 HOH 19 201 201 HOH HOH E . M 2 HOH 20 219 219 HOH HOH E . M 2 HOH 21 220 220 HOH HOH E . M 2 HOH 22 227 227 HOH HOH E . M 2 HOH 23 231 231 HOH HOH E . M 2 HOH 24 254 254 HOH HOH E . M 2 HOH 25 270 270 HOH HOH E . M 2 HOH 26 280 280 HOH HOH E . N 2 HOH 1 141 141 HOH HOH F . N 2 HOH 2 142 142 HOH HOH F . N 2 HOH 3 143 143 HOH HOH F . N 2 HOH 4 144 144 HOH HOH F . N 2 HOH 5 145 145 HOH HOH F . N 2 HOH 6 146 146 HOH HOH F . N 2 HOH 7 147 147 HOH HOH F . N 2 HOH 8 148 148 HOH HOH F . N 2 HOH 9 149 149 HOH HOH F . N 2 HOH 10 151 151 HOH HOH F . N 2 HOH 11 152 152 HOH HOH F . N 2 HOH 12 153 153 HOH HOH F . N 2 HOH 13 154 154 HOH HOH F . N 2 HOH 14 155 155 HOH HOH F . N 2 HOH 15 156 156 HOH HOH F . N 2 HOH 16 157 157 HOH HOH F . N 2 HOH 17 158 158 HOH HOH F . N 2 HOH 18 159 159 HOH HOH F . N 2 HOH 19 202 202 HOH HOH F . N 2 HOH 20 215 215 HOH HOH F . N 2 HOH 21 216 216 HOH HOH F . N 2 HOH 22 224 224 HOH HOH F . N 2 HOH 23 246 246 HOH HOH F . N 2 HOH 24 253 253 HOH HOH F . N 2 HOH 25 259 259 HOH HOH F . O 2 HOH 1 160 160 HOH HOH G . O 2 HOH 2 161 161 HOH HOH G . O 2 HOH 3 162 162 HOH HOH G . O 2 HOH 4 163 163 HOH HOH G . O 2 HOH 5 164 164 HOH HOH G . O 2 HOH 6 165 165 HOH HOH G . O 2 HOH 7 166 166 HOH HOH G . O 2 HOH 8 167 167 HOH HOH G . O 2 HOH 9 168 168 HOH HOH G . O 2 HOH 10 169 169 HOH HOH G . O 2 HOH 11 170 170 HOH HOH G . O 2 HOH 12 171 171 HOH HOH G . O 2 HOH 13 172 172 HOH HOH G . O 2 HOH 14 173 173 HOH HOH G . O 2 HOH 15 174 174 HOH HOH G . O 2 HOH 16 203 203 HOH HOH G . O 2 HOH 17 204 204 HOH HOH G . O 2 HOH 18 205 205 HOH HOH G . O 2 HOH 19 206 206 HOH HOH G . O 2 HOH 20 209 209 HOH HOH G . O 2 HOH 21 223 223 HOH HOH G . O 2 HOH 22 232 232 HOH HOH G . O 2 HOH 23 236 236 HOH HOH G . O 2 HOH 24 240 240 HOH HOH G . O 2 HOH 25 247 247 HOH HOH G . O 2 HOH 26 258 258 HOH HOH G . O 2 HOH 27 265 265 HOH HOH G . O 2 HOH 28 279 279 HOH HOH G . P 2 HOH 1 175 175 HOH HOH H . P 2 HOH 2 176 176 HOH HOH H . P 2 HOH 3 178 178 HOH HOH H . P 2 HOH 4 179 179 HOH HOH H . P 2 HOH 5 180 180 HOH HOH H . P 2 HOH 6 181 181 HOH HOH H . P 2 HOH 7 184 184 HOH HOH H . P 2 HOH 8 207 207 HOH HOH H . P 2 HOH 9 208 208 HOH HOH H . P 2 HOH 10 228 228 HOH HOH H . P 2 HOH 11 245 245 HOH HOH H . P 2 HOH 12 252 252 HOH HOH H . P 2 HOH 13 256 256 HOH HOH H . P 2 HOH 14 257 257 HOH HOH H . P 2 HOH 15 262 262 HOH HOH H . P 2 HOH 16 264 264 HOH HOH H . P 2 HOH 17 269 269 HOH HOH H . P 2 HOH 18 274 274 HOH HOH H . P 2 HOH 19 278 278 HOH HOH H . P 2 HOH 20 281 281 HOH HOH H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 ADSC 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1IH6 _cell.length_a 41.170 _cell.length_b 41.170 _cell.length_c 175.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IH6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 1IH6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.81 _exptl_crystal.density_percent_sol 56.22 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'magnesium chloride, sodium cacodylate, spermine tetrahydrochloride, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'spermine tetrahydrochloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 105.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-04-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.92042 1.0 2 0.92065 1.0 3 0.90836 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.92042, 0.92065, 0.90836' # _reflns.entry_id 1IH6 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.45 _reflns.number_obs 58509 _reflns.number_all 58509 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.104 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.0 _reflns.B_iso_Wilson_estimate 20.2 _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.589 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1IH6 _refine.ls_number_reflns_obs 58431 _refine.ls_number_reflns_all 58431 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.142 _refine.ls_R_factor_all 0.142 _refine.ls_R_factor_R_work 0.138 _refine.ls_R_factor_R_free 0.187 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 5766 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;This structure was solved using data collected at the peak of Bromine absorption. As a result, the structure factors of the unique reflections and bijvoets have been kept separate for deposition. In addition, the correct calculation for R-factor should take into the account the appropriate scattering factors (f' & f'') at this wavelength. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Chad C. Sines for SHELXL' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 960 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 234 _refine_hist.number_atoms_total 1202 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.29 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1IH6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1IH6 _struct.title 'Multi-Conformation Crystal Structure of GGBr5CGCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IH6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B to A DNA transition, DNA transition, structural transition, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1IH6 _struct_ref.pdbx_db_accession 1IH6 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1IH6 A 1 ? 6 ? 1IH6 1 ? 6 ? 1 6 2 1 1IH6 B 1 ? 6 ? 1IH6 7 ? 12 ? 7 12 3 1 1IH6 C 1 ? 6 ? 1IH6 13 ? 18 ? 13 18 4 1 1IH6 D 1 ? 6 ? 1IH6 19 ? 24 ? 19 24 5 1 1IH6 E 1 ? 6 ? 1IH6 25 ? 30 ? 25 30 6 1 1IH6 F 1 ? 6 ? 1IH6 31 ? 36 ? 31 36 7 1 1IH6 G 1 ? 6 ? 1IH6 37 ? 42 ? 37 42 8 1 1IH6 H 1 ? 6 ? 1IH6 43 ? 48 ? 43 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? 4 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A CBR 3 P ? ? A DG 2 A CBR 3 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale2 covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A CBR 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale3 covale both ? B DG 2 "O3'" ? ? ? 1_555 B CBR 3 P ? ? B DG 8 B CBR 9 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale4 covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B CBR 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale5 covale both ? C DG 2 "O3'" ? ? ? 1_555 C CBR 3 P ? ? C DG 14 C CBR 15 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale6 covale both ? C CBR 3 "O3'" ? ? ? 1_555 C DG 4 P ? ? C CBR 15 C DG 16 1_555 ? ? ? ? ? ? ? 1.568 ? ? covale7 covale both ? D DG 2 "O3'" ? ? ? 1_555 D CBR 3 P ? ? D DG 20 D CBR 21 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale8 covale both ? D CBR 3 "O3'" ? ? ? 1_555 D DG 4 P ? ? D CBR 21 D DG 22 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale9 covale both ? E DG 2 "O3'" ? ? ? 1_555 E CBR 3 P ? ? E DG 26 E CBR 27 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale10 covale both ? E CBR 3 "O3'" ? ? ? 1_555 E DG 4 P ? ? E CBR 27 E DG 28 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale11 covale both ? F DG 2 "O3'" ? ? ? 1_555 F CBR 3 P ? ? F DG 32 F CBR 33 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale12 covale both ? F CBR 3 "O3'" ? ? ? 1_555 F DG 4 P ? ? F CBR 33 F DG 34 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale13 covale both ? G DG 2 "O3'" ? ? ? 1_555 G CBR 3 P ? ? G DG 38 G CBR 39 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale14 covale both ? G CBR 3 "O3'" ? ? ? 1_555 G DG 4 P ? ? G CBR 39 G DG 40 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale15 covale both ? H DG 2 "O3'" ? ? ? 1_555 H CBR 3 P ? ? H DG 44 H CBR 45 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale16 covale both ? H CBR 3 "O3'" ? ? ? 1_555 H DG 4 P ? ? H CBR 45 H DG 46 1_555 ? ? ? ? ? ? ? 1.596 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CBR 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A CBR 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CBR 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A CBR 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CBR 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A CBR 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B CBR 3 N3 ? ? A DG 4 B CBR 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B CBR 3 O2 ? ? A DG 4 B CBR 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B CBR 3 N4 ? ? A DG 4 B CBR 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 6 O2 ? ? ? 1_555 D DG 1 N2 ? ? A DC 6 D DG 19 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog20 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C CBR 3 N3 ? ? ? 1_555 D DG 4 N1 ? ? C CBR 15 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C CBR 3 N4 ? ? ? 1_555 D DG 4 O6 ? ? C CBR 15 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C CBR 3 O2 ? ? ? 1_555 D DG 4 N2 ? ? C CBR 15 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D CBR 3 N3 ? ? C DG 16 D CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D CBR 3 O2 ? ? C DG 16 D CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D CBR 3 N4 ? ? C DG 16 D CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 5 N3 ? ? E DG 26 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 5 O2 ? ? E DG 26 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 5 N4 ? ? E DG 26 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E CBR 3 N3 ? ? ? 1_555 F DG 4 N1 ? ? E CBR 27 F DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E CBR 3 N4 ? ? ? 1_555 F DG 4 O6 ? ? E CBR 27 F DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E CBR 3 O2 ? ? ? 1_555 F DG 4 N2 ? ? E CBR 27 F DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F CBR 3 N3 ? ? E DG 28 F CBR 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F CBR 3 O2 ? ? E DG 28 F CBR 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F CBR 3 N4 ? ? E DG 28 F CBR 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 29 F DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 29 F DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 29 F DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? G DG 1 N1 ? ? ? 1_555 H DC 6 N3 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? G DG 1 N2 ? ? ? 1_555 H DC 6 O2 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? G DG 1 O6 ? ? ? 1_555 H DC 6 N4 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? G DG 2 N1 ? ? ? 1_555 H DC 5 N3 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? G DG 2 N2 ? ? ? 1_555 H DC 5 O2 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? G DG 2 O6 ? ? ? 1_555 H DC 5 N4 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? G CBR 3 N3 ? ? ? 1_555 H DG 4 N1 ? ? G CBR 39 H DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? G CBR 3 N4 ? ? ? 1_555 H DG 4 O6 ? ? G CBR 39 H DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? G CBR 3 O2 ? ? ? 1_555 H DG 4 N2 ? ? G CBR 39 H DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? G DG 4 N1 ? ? ? 1_555 H CBR 3 N3 ? ? G DG 40 H CBR 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? G DG 4 N2 ? ? ? 1_555 H CBR 3 O2 ? ? G DG 40 H CBR 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? G DG 4 O6 ? ? ? 1_555 H CBR 3 N4 ? ? G DG 40 H CBR 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? G DC 5 N3 ? ? ? 1_555 H DG 2 N1 ? ? G DC 41 H DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? G DC 5 N4 ? ? ? 1_555 H DG 2 O6 ? ? G DC 41 H DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? G DC 5 O2 ? ? ? 1_555 H DG 2 N2 ? ? G DC 41 H DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? G DC 6 N3 ? ? ? 1_555 H DG 1 N1 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? G DC 6 N4 ? ? ? 1_555 H DG 1 O6 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? G DC 6 O2 ? ? ? 1_555 H DG 1 N2 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.350 1.305 0.045 0.006 N 2 1 N7 E DG 26 ? ? C8 E DG 26 ? ? 1.348 1.305 0.043 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.18 108.30 3.88 0.30 N 2 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.17 104.50 -3.33 0.40 N 3 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 118.04 121.90 -3.86 0.40 N 4 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 123.03 119.90 3.13 0.50 N 5 1 C5 A DC 6 ? ? C6 A DC 6 ? ? N1 A DC 6 ? ? 124.65 121.00 3.65 0.50 N 6 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.24 108.30 3.94 0.30 N 7 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 107.94 105.40 2.54 0.40 N 8 1 N3 B DG 8 ? ? C4 B DG 8 ? ? N9 B DG 8 ? ? 121.53 126.00 -4.47 0.60 N 9 1 N3 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 132.36 128.60 3.76 0.50 N 10 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 113.34 110.80 2.54 0.40 N 11 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.61 119.90 4.71 0.60 N 12 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.89 128.60 -3.71 0.60 N 13 1 P B DC 11 ? ? "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? 111.29 120.90 -9.61 1.60 N 14 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 114.74 118.90 -4.16 0.60 N 15 1 C6 B DC 12 ? ? N1 B DC 12 ? ? C2 B DC 12 ? ? 122.85 120.30 2.55 0.40 N 16 1 "O4'" C DG 13 ? ? "C1'" C DG 13 ? ? N9 C DG 13 ? ? 110.96 108.30 2.66 0.30 N 17 1 "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? 100.04 104.50 -4.46 0.40 N 18 1 "O4'" C DC 18 ? ? "C4'" C DC 18 ? ? "C3'" C DC 18 ? ? 101.76 104.50 -2.74 0.40 N 19 1 N3 C DC 18 ? ? C4 C DC 18 ? ? C5 C DC 18 ? ? 119.03 121.90 -2.87 0.40 N 20 1 "O4'" D DG 19 ? ? "C1'" D DG 19 ? ? N9 D DG 19 ? ? 112.42 108.30 4.12 0.30 N 21 1 "O4'" D DG 22 ? ? "C1'" D DG 22 ? ? "C2'" D DG 22 ? ? 110.86 106.80 4.06 0.50 N 22 1 "O4'" D DG 22 ? ? "C1'" D DG 22 ? ? N9 D DG 22 ? ? 102.61 108.00 -5.39 0.70 N 23 1 "O4'" D DC 23 ? ? "C4'" D DC 23 ? ? "C3'" D DC 23 ? ? 101.65 104.50 -2.85 0.40 N 24 1 "O4'" E DG 25 ? ? "C1'" E DG 25 ? ? N9 E DG 25 ? ? 110.97 108.30 2.67 0.30 N 25 1 "O4'" E DC 29 ? ? "C4'" E DC 29 ? ? "C3'" E DC 29 ? ? 101.41 104.50 -3.09 0.40 N 26 1 "O4'" E DC 29 ? ? "C1'" E DC 29 ? ? N1 E DC 29 ? ? 111.45 108.30 3.15 0.30 N 27 1 C4 E DC 29 ? ? C5 E DC 29 ? ? C6 E DC 29 ? ? 113.74 117.40 -3.66 0.50 N 28 1 C5 E DC 29 ? ? C6 E DC 29 ? ? N1 E DC 29 ? ? 124.73 121.00 3.73 0.50 N 29 1 "O4'" E DC 30 ? ? "C4'" E DC 30 ? ? "C3'" E DC 30 ? ? 101.84 104.50 -2.66 0.40 N 30 1 N3 E DC 30 ? ? C4 E DC 30 ? ? C5 E DC 30 ? ? 124.70 121.90 2.80 0.40 N 31 1 C4 E DC 30 ? ? C5 E DC 30 ? ? C6 E DC 30 ? ? 112.82 117.40 -4.58 0.50 N 32 1 "O4'" F DG 31 ? ? "C1'" F DG 31 ? ? N9 F DG 31 ? ? 112.19 108.30 3.89 0.30 N 33 1 N7 F DG 32 ? ? C8 F DG 32 ? ? N9 F DG 32 ? ? 110.00 113.10 -3.10 0.50 N 34 1 "O4'" F DG 34 ? ? "C1'" F DG 34 ? ? "C2'" F DG 34 ? ? 109.95 106.80 3.15 0.50 N 35 1 "O4'" F DG 34 ? ? "C1'" F DG 34 ? ? N9 F DG 34 ? ? 103.50 108.00 -4.50 0.70 N 36 1 "O4'" F DC 35 ? ? "C4'" F DC 35 ? ? "C3'" F DC 35 ? ? 102.03 104.50 -2.47 0.40 N 37 1 C2 F DC 35 ? ? N3 F DC 35 ? ? C4 F DC 35 ? ? 124.32 119.90 4.42 0.50 N 38 1 N3 F DC 35 ? ? C4 F DC 35 ? ? C5 F DC 35 ? ? 117.58 121.90 -4.32 0.40 N 39 1 "O4'" F DC 36 ? ? "C1'" F DC 36 ? ? N1 F DC 36 ? ? 113.90 108.30 5.60 0.30 N 40 1 "O4'" G DG 37 ? ? "C4'" G DG 37 ? ? "C3'" G DG 37 ? ? 101.69 104.50 -2.81 0.40 N 41 1 C5 G DG 38 ? ? C6 G DG 38 ? ? O6 G DG 38 ? ? 123.65 128.60 -4.95 0.60 N 42 1 "O4'" G DG 40 ? ? "C1'" G DG 40 ? ? N9 G DG 40 ? ? 110.18 108.30 1.88 0.30 N 43 1 "O4'" H DG 43 ? ? "C4'" H DG 43 ? ? "C3'" H DG 43 ? ? 101.58 104.50 -2.92 0.40 N 44 1 "O4'" H DG 43 ? ? "C1'" H DG 43 ? ? N9 H DG 43 ? ? 111.59 108.30 3.29 0.30 N 45 1 N7 H DG 43 ? ? C8 H DG 43 ? ? N9 H DG 43 ? ? 110.09 113.10 -3.01 0.50 N 46 1 N1 H DG 44 ? ? C6 H DG 44 ? ? O6 H DG 44 ? ? 113.92 119.90 -5.98 0.60 N 47 1 C5 H DG 44 ? ? C6 H DG 44 ? ? O6 H DG 44 ? ? 134.88 128.60 6.28 0.60 N 48 1 "O5'" H DG 46 ? ? "C5'" H DG 46 ? ? "C4'" H DG 46 ? ? 103.51 109.40 -5.89 0.80 N 49 1 C5 H DC 47 ? ? C6 H DC 47 ? ? N1 H DC 47 ? ? 117.92 121.00 -3.08 0.50 N 50 1 "O4'" H DC 48 ? ? "C4'" H DC 48 ? ? "C3'" H DC 48 ? ? 101.75 104.50 -2.75 0.40 N 51 1 "C1'" H DC 48 ? ? "O4'" H DC 48 ? ? "C4'" H DC 48 ? ? 102.88 110.10 -7.22 1.00 N 52 1 "O4'" H DC 48 ? ? "C1'" H DC 48 ? ? N1 H DC 48 ? ? 112.32 108.30 4.02 0.30 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 3 A CBR 3 ? DC ? 2 B CBR 3 B CBR 9 ? DC ? 3 C CBR 3 C CBR 15 ? DC ? 4 D CBR 3 D CBR 21 ? DC ? 5 E CBR 3 E CBR 27 ? DC ? 6 F CBR 3 F CBR 33 ? DC ? 7 G CBR 3 G CBR 39 ? DC ? 8 H CBR 3 H CBR 45 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DC OP3 O N N 35 DC P P N N 36 DC OP1 O N N 37 DC OP2 O N N 38 DC "O5'" O N N 39 DC "C5'" C N N 40 DC "C4'" C N R 41 DC "O4'" O N N 42 DC "C3'" C N S 43 DC "O3'" O N N 44 DC "C2'" C N N 45 DC "C1'" C N R 46 DC N1 N N N 47 DC C2 C N N 48 DC O2 O N N 49 DC N3 N N N 50 DC C4 C N N 51 DC N4 N N N 52 DC C5 C N N 53 DC C6 C N N 54 DC HOP3 H N N 55 DC HOP2 H N N 56 DC "H5'" H N N 57 DC "H5''" H N N 58 DC "H4'" H N N 59 DC "H3'" H N N 60 DC "HO3'" H N N 61 DC "H2'" H N N 62 DC "H2''" H N N 63 DC "H1'" H N N 64 DC H41 H N N 65 DC H42 H N N 66 DC H5 H N N 67 DC H6 H N N 68 DG OP3 O N N 69 DG P P N N 70 DG OP1 O N N 71 DG OP2 O N N 72 DG "O5'" O N N 73 DG "C5'" C N N 74 DG "C4'" C N R 75 DG "O4'" O N N 76 DG "C3'" C N S 77 DG "O3'" O N N 78 DG "C2'" C N N 79 DG "C1'" C N R 80 DG N9 N Y N 81 DG C8 C Y N 82 DG N7 N Y N 83 DG C5 C Y N 84 DG C6 C N N 85 DG O6 O N N 86 DG N1 N N N 87 DG C2 C N N 88 DG N2 N N N 89 DG N3 N N N 90 DG C4 C Y N 91 DG HOP3 H N N 92 DG HOP2 H N N 93 DG "H5'" H N N 94 DG "H5''" H N N 95 DG "H4'" H N N 96 DG "H3'" H N N 97 DG "HO3'" H N N 98 DG "H2'" H N N 99 DG "H2''" H N N 100 DG "H1'" H N N 101 DG H8 H N N 102 DG H1 H N N 103 DG H21 H N N 104 DG H22 H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DC OP3 P sing N N 36 DC OP3 HOP3 sing N N 37 DC P OP1 doub N N 38 DC P OP2 sing N N 39 DC P "O5'" sing N N 40 DC OP2 HOP2 sing N N 41 DC "O5'" "C5'" sing N N 42 DC "C5'" "C4'" sing N N 43 DC "C5'" "H5'" sing N N 44 DC "C5'" "H5''" sing N N 45 DC "C4'" "O4'" sing N N 46 DC "C4'" "C3'" sing N N 47 DC "C4'" "H4'" sing N N 48 DC "O4'" "C1'" sing N N 49 DC "C3'" "O3'" sing N N 50 DC "C3'" "C2'" sing N N 51 DC "C3'" "H3'" sing N N 52 DC "O3'" "HO3'" sing N N 53 DC "C2'" "C1'" sing N N 54 DC "C2'" "H2'" sing N N 55 DC "C2'" "H2''" sing N N 56 DC "C1'" N1 sing N N 57 DC "C1'" "H1'" sing N N 58 DC N1 C2 sing N N 59 DC N1 C6 sing N N 60 DC C2 O2 doub N N 61 DC C2 N3 sing N N 62 DC N3 C4 doub N N 63 DC C4 N4 sing N N 64 DC C4 C5 sing N N 65 DC N4 H41 sing N N 66 DC N4 H42 sing N N 67 DC C5 C6 doub N N 68 DC C5 H5 sing N N 69 DC C6 H6 sing N N 70 DG OP3 P sing N N 71 DG OP3 HOP3 sing N N 72 DG P OP1 doub N N 73 DG P OP2 sing N N 74 DG P "O5'" sing N N 75 DG OP2 HOP2 sing N N 76 DG "O5'" "C5'" sing N N 77 DG "C5'" "C4'" sing N N 78 DG "C5'" "H5'" sing N N 79 DG "C5'" "H5''" sing N N 80 DG "C4'" "O4'" sing N N 81 DG "C4'" "C3'" sing N N 82 DG "C4'" "H4'" sing N N 83 DG "O4'" "C1'" sing N N 84 DG "C3'" "O3'" sing N N 85 DG "C3'" "C2'" sing N N 86 DG "C3'" "H3'" sing N N 87 DG "O3'" "HO3'" sing N N 88 DG "C2'" "C1'" sing N N 89 DG "C2'" "H2'" sing N N 90 DG "C2'" "H2''" sing N N 91 DG "C1'" N9 sing N N 92 DG "C1'" "H1'" sing N N 93 DG N9 C8 sing Y N 94 DG N9 C4 sing Y N 95 DG C8 N7 doub Y N 96 DG C8 H8 sing N N 97 DG N7 C5 sing Y N 98 DG C5 C6 sing N N 99 DG C5 C4 doub Y N 100 DG C6 O6 doub N N 101 DG C6 N1 sing N N 102 DG N1 C2 sing N N 103 DG N1 H1 sing N N 104 DG C2 N2 sing N N 105 DG C2 N3 doub N N 106 DG N2 H21 sing N N 107 DG N2 H22 sing N N 108 DG N3 C4 sing N N 109 HOH O H1 sing N N 110 HOH O H2 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1IH6 'double helix' 1IH6 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 -0.323 -0.111 -0.233 -8.681 3.765 -0.537 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 -0.234 -0.132 -0.137 -7.103 -8.778 1.156 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A CBR 3 1_555 B DG 4 1_555 0.261 -0.156 0.036 -5.049 -7.516 -1.769 3 A_CBR3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B CBR 3 1_555 -0.215 -0.129 -0.074 -7.501 -9.006 -0.240 4 A_DG4:CBR9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 0.029 -0.075 0.016 -0.958 -7.973 1.818 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 1 1_555 0.338 -0.182 -0.087 6.226 4.040 -3.022 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 1 C DG 1 1_555 D DC 6 1_555 -0.267 -0.110 -0.225 -5.447 -3.673 -0.818 7 C_DG13:DC24_D C 13 ? D 24 ? 19 1 1 C DG 2 1_555 D DC 5 1_555 -0.247 -0.109 0.103 2.199 -4.295 -1.626 8 C_DG14:DC23_D C 14 ? D 23 ? 19 1 1 C CBR 3 1_555 D DG 4 1_555 0.332 -0.149 -0.021 6.542 -12.146 -1.193 9 C_CBR15:DG22_D C 15 ? D 22 ? 19 1 1 C DG 4 1_555 D CBR 3 1_555 -0.196 -0.120 0.077 -5.482 -10.437 -0.435 10 C_DG16:CBR21_D C 16 ? D 21 ? 19 1 1 C DC 5 1_555 D DG 2 1_555 0.322 -0.092 0.096 1.546 -7.005 2.896 11 C_DC17:DG20_D C 17 ? D 20 ? 19 1 1 C DC 6 1_555 D DG 1 1_555 0.299 -0.085 -0.263 8.971 1.590 -0.349 12 C_DC18:DG19_D C 18 ? D 19 ? 19 1 1 E DG 1 1_555 F DC 6 1_555 -0.270 -0.126 -0.249 -3.136 0.053 -2.985 13 E_DG25:DC36_F E 25 ? F 36 ? 19 1 1 E DG 2 1_555 F DC 5 1_555 -0.251 -0.075 0.105 4.077 -3.815 -0.350 14 E_DG26:DC35_F E 26 ? F 35 ? 19 1 1 E CBR 3 1_555 F DG 4 1_555 0.333 -0.136 -0.090 6.389 -11.504 -1.077 15 E_CBR27:DG34_F E 27 ? F 34 ? 19 1 1 E DG 4 1_555 F CBR 3 1_555 -0.218 -0.116 0.015 -5.565 -11.905 0.299 16 E_DG28:CBR33_F E 28 ? F 33 ? 19 1 1 E DC 5 1_555 F DG 2 1_555 0.259 -0.027 0.043 -3.314 -7.505 3.249 17 E_DC29:DG32_F E 29 ? F 32 ? 19 1 1 E DC 6 1_555 F DG 1 1_555 0.392 -0.153 -0.151 4.689 4.391 -2.895 18 E_DC30:DG31_F E 30 ? F 31 ? 19 1 1 G DG 1 1_555 H DC 6 1_555 -0.453 -0.097 -0.308 -20.242 -7.659 0.520 19 G_DG37:DC48_H G 37 ? H 48 ? 19 1 1 G DG 2 1_555 H DC 5 1_555 -0.150 -0.111 0.102 -15.536 -7.973 -1.087 20 G_DG38:DC47_H G 38 ? H 47 ? 19 1 1 G CBR 3 1_555 H DG 4 1_555 0.357 -0.078 0.250 -15.807 -2.206 0.847 21 G_CBR39:DG46_H G 39 ? H 46 ? 19 1 1 G DG 4 1_555 H CBR 3 1_555 -0.567 -0.027 0.443 15.571 -3.464 3.246 22 G_DG40:CBR45_H G 40 ? H 45 ? 19 1 1 G DC 5 1_555 H DG 2 1_555 0.220 0.091 -0.108 19.179 -9.886 0.319 23 G_DC41:DG44_H G 41 ? H 44 ? 19 1 1 G DC 6 1_555 H DG 1 1_555 0.427 -0.172 -0.387 24.431 -17.915 -1.265 24 G_DC42:DG43_H G 42 ? H 43 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A DG 2 1_555 B DC 5 1_555 0.503 -2.042 3.282 1.264 5.792 31.110 -4.760 -0.700 2.882 10.678 -2.331 31.657 1 AA_DG1DG2:DC11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A CBR 3 1_555 B DG 4 1_555 -0.728 -1.723 3.304 -0.477 -1.129 32.816 -2.850 1.204 3.369 -1.997 0.843 32.838 2 AA_DG2CBR3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A CBR 3 1_555 B DG 4 1_555 A DG 4 1_555 B CBR 3 1_555 0.348 -1.619 3.289 2.033 8.288 27.164 -5.078 -0.271 2.705 17.118 -4.198 28.449 3 AA_CBR3DG4:CBR9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B CBR 3 1_555 A DC 5 1_555 B DG 2 1_555 0.782 -1.744 3.172 0.257 2.570 31.739 -3.624 -1.382 3.031 4.690 -0.469 31.841 4 AA_DG4DC5:DG8CBR9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DC 6 1_555 B DG 1 1_555 -0.711 -1.970 3.142 -1.162 4.492 29.802 -4.629 1.148 2.847 8.669 2.242 30.153 5 AA_DC5DC6:DG7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 C DG 1 1_555 D DC 6 1_555 C DG 2 1_555 D DC 5 1_555 -1.046 -2.186 3.071 -4.775 4.139 24.184 -6.181 1.116 2.814 9.670 11.155 24.985 6 CC_DG13DG14:DC23DC24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 C DG 2 1_555 D DC 5 1_555 C CBR 3 1_555 D DG 4 1_555 -0.196 -1.262 3.264 0.886 2.265 35.339 -2.402 0.451 3.174 3.726 -1.458 35.420 7 CC_DG14CBR15:DG22DC23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 C CBR 3 1_555 D DG 4 1_555 C DG 4 1_555 D CBR 3 1_555 0.277 -1.550 3.380 0.566 7.903 32.612 -3.958 -0.388 2.939 13.820 -0.991 33.536 8 CC_CBR15DG16:CBR21DG22_DD C 15 ? D 22 ? C 16 ? D 21 ? 1 C DG 4 1_555 D CBR 3 1_555 C DC 5 1_555 D DG 2 1_555 0.646 -1.533 3.172 0.520 0.264 31.755 -2.849 -1.088 3.170 0.482 -0.950 31.760 9 CC_DG16DC17:DG20CBR21_DD C 16 ? D 21 ? C 17 ? D 20 ? 1 C DC 5 1_555 D DG 2 1_555 C DC 6 1_555 D DG 1 1_555 -0.498 -1.991 3.109 0.373 2.573 30.345 -4.266 1.016 2.928 4.904 -0.712 30.453 10 CC_DC17DC18:DG19DG20_DD C 17 ? D 20 ? C 18 ? D 19 ? 1 E DG 1 1_555 F DC 6 1_555 E DG 2 1_555 F DC 5 1_555 -0.970 -2.444 3.104 -6.213 5.826 22.046 -7.714 0.512 2.557 14.554 15.523 23.615 11 EE_DG25DG26:DC35DC36_FF E 25 ? F 36 ? E 26 ? F 35 ? 1 E DG 2 1_555 F DC 5 1_555 E CBR 3 1_555 F DG 4 1_555 -0.392 -1.634 3.321 0.395 3.620 36.148 -3.121 0.684 3.144 5.816 -0.635 36.325 12 EE_DG26CBR27:DG34DC35_FF E 26 ? F 35 ? E 27 ? F 34 ? 1 E CBR 3 1_555 F DG 4 1_555 E DG 4 1_555 F CBR 3 1_555 0.340 -1.761 3.414 0.436 10.812 28.611 -5.381 -0.563 2.596 20.955 -0.846 30.549 13 EE_CBR27DG28:CBR33DG34_FF E 27 ? F 34 ? E 28 ? F 33 ? 1 E DG 4 1_555 F CBR 3 1_555 E DC 5 1_555 F DG 2 1_555 0.807 -1.946 3.228 1.419 1.932 32.637 -3.779 -1.193 3.142 3.432 -2.521 32.722 14 EE_DG28DC29:DG32CBR33_FF E 28 ? F 33 ? E 29 ? F 32 ? 1 E DC 5 1_555 F DG 2 1_555 E DC 6 1_555 F DG 1 1_555 -0.742 -1.880 3.113 0.781 4.936 29.592 -4.548 1.578 2.750 9.578 -1.516 30.002 15 EE_DC29DC30:DG31DG32_FF E 29 ? F 32 ? E 30 ? F 31 ? 1 G DG 1 1_555 H DC 6 1_555 G DG 2 1_555 H DC 5 1_555 0.113 -1.462 3.275 1.101 3.023 28.312 -3.647 0.016 3.107 6.154 -2.242 28.490 16 GG_DG37DG38:DC47DC48_HH G 37 ? H 48 ? G 38 ? H 47 ? 1 G DG 2 1_555 H DC 5 1_555 G CBR 3 1_555 H DG 4 1_555 -0.134 -1.176 3.369 3.136 -0.699 37.545 -1.728 0.627 3.367 -1.083 -4.862 37.677 17 GG_DG38CBR39:DG46DC47_HH G 38 ? H 47 ? G 39 ? H 46 ? 1 G CBR 3 1_555 H DG 4 1_555 G DG 4 1_555 H CBR 3 1_555 0.059 -0.498 2.515 -0.317 6.257 25.402 -2.378 -0.196 2.326 13.960 0.707 26.151 18 GG_CBR39DG40:CBR45DG46_HH G 39 ? H 46 ? G 40 ? H 45 ? 1 G DG 4 1_555 H CBR 3 1_555 G DC 5 1_555 H DG 2 1_555 0.384 -0.989 3.323 0.640 0.267 35.227 -1.674 -0.538 3.322 0.441 -1.058 35.233 19 GG_DG40DC41:DG44CBR45_HH G 40 ? H 45 ? G 41 ? H 44 ? 1 G DC 5 1_555 H DG 2 1_555 G DC 6 1_555 H DG 1 1_555 -0.819 -1.138 3.193 -3.078 3.785 30.822 -2.813 0.957 3.100 7.066 5.745 31.196 20 GG_DC41DC42:DG43DG44_HH G 41 ? H 44 ? G 42 ? H 43 ? # _atom_sites.entry_id 1IH6 _atom_sites.fract_transf_matrix[1][1] 0.024290 _atom_sites.fract_transf_matrix[1][2] 0.014024 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005710 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_