HEADER    LIGASE                                  18-APR-01   1IH8              
TITLE     NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH   
TITLE    2 AMP-CPP AND MG2+ IONS.                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE;                         
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: NAD(+) SYNTHETASE;                                          
COMPND   5 EC: 6.3.5.1;                                                         
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS;                              
SOURCE   3 ORGANISM_TAXID: 1423;                                                
SOURCE   4 GENE: OUTB;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DH3) PLYSS;                           
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET21                                     
KEYWDS    LIGASE, AMIDOTRANSFERASE, ATP PYROPHOSPHATASE, ACTIVE-SITE LOOPS      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.DEVEDJIEV,J.SYMERSKY,R.SINGH,M.JEDRZEJAS,C.BROUILLETTE,             
AUTHOR   2 W.BROUILLETTE,D.MUCCIO,D.CHATTOPADHYAY,L.DELUCAS                     
REVDAT   4   16-AUG-23 1IH8    1       REMARK LINK                              
REVDAT   3   24-FEB-09 1IH8    1       VERSN                                    
REVDAT   2   01-APR-03 1IH8    1       JRNL                                     
REVDAT   1   06-JUN-01 1IH8    0                                                
JRNL        AUTH   Y.DEVEDJIEV,J.SYMERSKY,R.SINGH,M.JEDRZEJAS,C.BROUILLETTE,    
JRNL        AUTH 2 W.BROUILLETTE,D.MUCCIO,D.CHATTOPADHYAY,L.DELUCAS             
JRNL        TITL   STABILIZATION OF ACTIVE-SITE LOOPS IN NH3-DEPENDENT NAD+     
JRNL        TITL 2 SYNTHETASE FROM BACILLUS SUBTILIS.                           
JRNL        REF    ACTA CRYSTALLOGR.,SECT.D      V.  57   806 2001              
JRNL        REFN                   ISSN 0907-4449                               
JRNL        PMID   11375500                                                     
JRNL        DOI    10.1107/S0907444901003523                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.83                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 2.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 346000.400                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 96.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 37901                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.167                           
REMARK   3   FREE R VALUE                     : 0.205                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1900                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.005                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 10                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.97                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 92.90                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 3442                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1750                       
REMARK   3   BIN FREE R VALUE                    : 0.2440                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.50                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 202                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.017                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4072                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 34                                      
REMARK   3   SOLVENT ATOMS            : 590                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 10.80                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 15.40                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.72000                                             
REMARK   3    B22 (A**2) : -0.32000                                             
REMARK   3    B33 (A**2) : 1.05000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 1.46000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.18                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.06                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 30.0                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.22                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.15                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.005                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.100                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 20.10                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.710                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.170 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 1.700 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.030 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.000 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.37                                                 
REMARK   3   BSOL        : 48.29                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : AMPCPP.PARAM                                   
REMARK   3  PARAMETER FILE  3  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  4  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : PROTEIN.LINK                                   
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : AMPCPP.TOP                                     
REMARK   3  TOPOLOGY FILE  5   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: SUBUNIT A HAS ALL 271 RESIDUES AND        
REMARK   3  METHYLENEADENOSINE TRIPHOSPHATE. IN THE SUBUNIT B, RESIDUES 1083-   
REMARK   3  1086, 1205-1224, AND METHYLENEADENOSINE TRIPHOSPHATE ARE            
REMARK   3  DISORDERED AND NOT INCLUDED IN THE MODEL.                           
REMARK   4                                                                      
REMARK   4 1IH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-01.                  
REMARK 100 THE DEPOSITION ID IS D_1000013264.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 27-JUN-00                          
REMARK 200  TEMPERATURE           (KELVIN) : 120                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RU200                       
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NI FILTER                          
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MACSCIENCE DIP100                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 38796                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -10.000                            
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.8                               
REMARK 200  DATA REDUNDANCY                : 2.900                              
REMARK 200  R MERGE                    (I) : 0.04800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 20.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.97                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.15400                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 7.600                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS            
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1NSY                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 39.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION IN MICROSEEDED HANGING   
REMARK 280  DROPS. 20-26% PEG400, 0.05 M HEPES SODIUM SALT, PH=7.5, 0.1 M       
REMARK 280  MAGNESIUM CHLORIDE, 0.002 M AMP-CPP., VAPOR DIFFUSION, HANGING      
REMARK 280  DROP, TEMPERATURE 295K, PH 7.5                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       42.70550            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER CONSISTING OF CHAINS  
REMARK 300 A AND B IN THE SAME ASYMMETRIC UNIT.                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21450 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     THR B  1083                                                      
REMARK 465     GLN B  1084                                                      
REMARK 465     GLN B  1085                                                      
REMARK 465     ASP B  1086                                                      
REMARK 465     LYS B  1205                                                      
REMARK 465     GLU B  1206                                                      
REMARK 465     PRO B  1207                                                      
REMARK 465     THR B  1208                                                      
REMARK 465     ALA B  1209                                                      
REMARK 465     ASP B  1210                                                      
REMARK 465     LEU B  1211                                                      
REMARK 465     LEU B  1212                                                      
REMARK 465     ASP B  1213                                                      
REMARK 465     GLU B  1214                                                      
REMARK 465     LYS B  1215                                                      
REMARK 465     PRO B  1216                                                      
REMARK 465     GLN B  1217                                                      
REMARK 465     GLN B  1218                                                      
REMARK 465     SER B  1219                                                      
REMARK 465     ASP B  1220                                                      
REMARK 465     GLU B  1221                                                      
REMARK 465     THR B  1222                                                      
REMARK 465     GLU B  1223                                                      
REMARK 465     LEU B  1224                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    VAL B1244      -71.18    -62.69                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A4003  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 162   OE1                                                    
REMARK 620 2 HOH A2060   O    89.5                                              
REMARK 620 3 HOH A2248   O    78.7 167.4                                        
REMARK 620 4 HOH A2387   O    88.1  90.3  84.7                                  
REMARK 620 5 HOH A2388   O    85.2  96.4  87.3 170.5                            
REMARK 620 6 APC A3001   O2A 165.1  99.5  93.0 103.6  82.0                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A4002  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 208   O                                                      
REMARK 620 2 HOH A2385   O    91.4                                              
REMARK 620 3 HOH A2386   O    93.5  96.1                                        
REMARK 620 4 APC A3001   O1G  89.9 171.3  92.4                                  
REMARK 620 5 APC A3001   O1A  83.8  85.2 177.1  86.4                            
REMARK 620 6 APC A3001   O2B 168.1  92.9  97.1  84.2  85.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG B4004  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP B1124   OD1                                                    
REMARK 620 2 HOH B2280   O    72.5                                              
REMARK 620 3 HOH B2367   O    85.1  83.4                                        
REMARK 620 4 HOH B2480   O   158.1  90.6  79.2                                  
REMARK 620 5 HOH B2481   O   100.5  82.2 162.1  90.4                            
REMARK 620 6 HOH B2482   O   105.9 172.0  88.7  88.9 105.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 4002                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 4003                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 4004                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 3001                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1NSY   RELATED DB: PDB                                   
REMARK 900 1NSY IS THE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM  
REMARK 900 BACILLUS SUBTILIS                                                    
REMARK 900 RELATED ID: 2NSY   RELATED DB: PDB                                   
REMARK 900 2NSY IS THE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM  
REMARK 900 BACILLUS SUBTILIS IN COMPLEX WITH NAD-ADENYLATE                      
REMARK 900 RELATED ID: 1EE1   RELATED DB: PDB                                   
REMARK 900 1EE1 IS THE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM  
REMARK 900 BACILLUS SUBTILIS COMPLEXED WITH ONE ATP, TWO MOLECULES DEAMIDO-NAD+ 
REMARK 900 AND ONE MG2+ ION                                                     
REMARK 900 RELATED ID: 1FYD   RELATED DB: PDB                                   
REMARK 900 1FYD IS THE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM  
REMARK 900 BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE AMP, ONE               
REMARK 900 PYROPHOSPHATE ION AND ONE MG2+ ION                                   
REMARK 900 RELATED ID: 1IFX   RELATED DB: PDB                                   
REMARK 900 1IFX IS THE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM  
REMARK 900 BACILLUS SUBTILIS COMPLEXED WITH TWO MOLECULES DEAMIDO-NAD           
DBREF  1IH8 A    1   271  UNP    P08164   NADE_BACSU       1    271             
DBREF  1IH8 B 1001  1271  UNP    P08164   NADE_BACSU       1    271             
SEQRES   1 A  271  SER MET GLN GLU LYS ILE MET ARG GLU LEU HIS VAL LYS          
SEQRES   2 A  271  PRO SER ILE ASP PRO LYS GLN GLU ILE GLU ASP ARG VAL          
SEQRES   3 A  271  ASN PHE LEU LYS GLN TYR VAL LYS LYS THR GLY ALA LYS          
SEQRES   4 A  271  GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER THR          
SEQRES   5 A  271  LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU SER ILE          
SEQRES   6 A  271  ARG GLU GLU GLY GLY ASP ALA GLN PHE ILE ALA VAL ARG          
SEQRES   7 A  271  LEU PRO HIS GLY THR GLN GLN ASP GLU ASP ASP ALA GLN          
SEQRES   8 A  271  LEU ALA LEU LYS PHE ILE LYS PRO ASP LYS SER TRP LYS          
SEQRES   9 A  271  PHE ASP ILE LYS SER THR VAL SER ALA PHE SER ASP GLN          
SEQRES  10 A  271  TYR GLN GLN GLU THR GLY ASP GLN LEU THR ASP PHE ASN          
SEQRES  11 A  271  LYS GLY ASN VAL LYS ALA ARG THR ARG MET ILE ALA GLN          
SEQRES  12 A  271  TYR ALA ILE GLY GLY GLN GLU GLY LEU LEU VAL LEU GLY          
SEQRES  13 A  271  THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE THR          
SEQRES  14 A  271  LYS TYR GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU THR          
SEQRES  15 A  271  GLY LEU THR LYS ARG GLN GLY ARG THR LEU LEU LYS GLU          
SEQRES  16 A  271  LEU GLY ALA PRO GLU ARG LEU TYR LEU LYS GLU PRO THR          
SEQRES  17 A  271  ALA ASP LEU LEU ASP GLU LYS PRO GLN GLN SER ASP GLU          
SEQRES  18 A  271  THR GLU LEU GLY ILE SER TYR ASP GLU ILE ASP ASP TYR          
SEQRES  19 A  271  LEU GLU GLY LYS GLU VAL SER ALA LYS VAL SER GLU ALA          
SEQRES  20 A  271  LEU GLU LYS ARG TYR SER MET THR GLU HIS LYS ARG GLN          
SEQRES  21 A  271  VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS                  
SEQRES   1 B  271  SER MET GLN GLU LYS ILE MET ARG GLU LEU HIS VAL LYS          
SEQRES   2 B  271  PRO SER ILE ASP PRO LYS GLN GLU ILE GLU ASP ARG VAL          
SEQRES   3 B  271  ASN PHE LEU LYS GLN TYR VAL LYS LYS THR GLY ALA LYS          
SEQRES   4 B  271  GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER THR          
SEQRES   5 B  271  LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU SER ILE          
SEQRES   6 B  271  ARG GLU GLU GLY GLY ASP ALA GLN PHE ILE ALA VAL ARG          
SEQRES   7 B  271  LEU PRO HIS GLY THR GLN GLN ASP GLU ASP ASP ALA GLN          
SEQRES   8 B  271  LEU ALA LEU LYS PHE ILE LYS PRO ASP LYS SER TRP LYS          
SEQRES   9 B  271  PHE ASP ILE LYS SER THR VAL SER ALA PHE SER ASP GLN          
SEQRES  10 B  271  TYR GLN GLN GLU THR GLY ASP GLN LEU THR ASP PHE ASN          
SEQRES  11 B  271  LYS GLY ASN VAL LYS ALA ARG THR ARG MET ILE ALA GLN          
SEQRES  12 B  271  TYR ALA ILE GLY GLY GLN GLU GLY LEU LEU VAL LEU GLY          
SEQRES  13 B  271  THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE THR          
SEQRES  14 B  271  LYS TYR GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU THR          
SEQRES  15 B  271  GLY LEU THR LYS ARG GLN GLY ARG THR LEU LEU LYS GLU          
SEQRES  16 B  271  LEU GLY ALA PRO GLU ARG LEU TYR LEU LYS GLU PRO THR          
SEQRES  17 B  271  ALA ASP LEU LEU ASP GLU LYS PRO GLN GLN SER ASP GLU          
SEQRES  18 B  271  THR GLU LEU GLY ILE SER TYR ASP GLU ILE ASP ASP TYR          
SEQRES  19 B  271  LEU GLU GLY LYS GLU VAL SER ALA LYS VAL SER GLU ALA          
SEQRES  20 B  271  LEU GLU LYS ARG TYR SER MET THR GLU HIS LYS ARG GLN          
SEQRES  21 B  271  VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS                  
HET     MG  A4002       1                                                       
HET     MG  A4003       1                                                       
HET    APC  A3001      31                                                       
HET     MG  B4004       1                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER                    
HETSYN     APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE                    
FORMUL   3   MG    3(MG 2+)                                                     
FORMUL   5  APC    C11 H18 N5 O12 P3                                            
FORMUL   7  HOH   *590(H2 O)                                                    
HELIX    1   1 SER A    1  LEU A   10  1                                  10    
HELIX    2   2 ASP A   17  GLY A   37  1                                  21    
HELIX    3   3 GLY A   48  GLU A   68  1                                  21    
HELIX    4   4 ASP A   86  LYS A   98  1                                  13    
HELIX    5   5 ILE A  107  GLY A  123  1                                  17    
HELIX    6   6 THR A  127  GLY A  151  1                                  25    
HELIX    7   7 HIS A  159  VAL A  164  1                                   6    
HELIX    8   8 THR A  185  LEU A  196  1                                  12    
HELIX    9   9 PRO A  199  LEU A  204  5                                   6    
HELIX   10  10 SER A  219  GLY A  225  1                                   7    
HELIX   11  11 SER A  227  GLU A  236  1                                  10    
HELIX   12  12 SER A  241  THR A  255  1                                  15    
HELIX   13  13 GLU A  256  GLN A  260  5                                   5    
HELIX   14  14 SER B 1001  LEU B 1010  1                                  10    
HELIX   15  15 ASP B 1017  GLY B 1037  1                                  21    
HELIX   16  16 GLY B 1048  GLU B 1068  1                                  21    
HELIX   17  17 GLU B 1087  LYS B 1098  1                                  12    
HELIX   18  18 ILE B 1107  GLY B 1123  1                                  17    
HELIX   19  19 THR B 1127  GLY B 1151  1                                  25    
HELIX   20  20 HIS B 1159  GLY B 1166  1                                   8    
HELIX   21  21 THR B 1185  LEU B 1196  1                                  12    
HELIX   22  22 PRO B 1199  LEU B 1204  1                                   6    
HELIX   23  23 SER B 1227  GLU B 1236  1                                  10    
HELIX   24  24 SER B 1241  THR B 1255  1                                  15    
HELIX   25  25 GLU B 1256  GLN B 1260  5                                   5    
SHEET    1   A 4 LYS A 101  LYS A 104  0                                        
SHEET    2   A 4 GLN A  73  ARG A  78  1  O  PHE A  74   N  LYS A 101           
SHEET    3   A 4 GLY A  40  GLY A  44  1  O  PHE A  41   N  ILE A  75           
SHEET    4   A 4 LEU A 153  VAL A 154  1  N  LEU A 153   O  GLY A  40           
SHEET    1   B 4 LYS B1101  LYS B1104  0                                        
SHEET    2   B 4 GLN B1073  ARG B1078  1  O  PHE B1074   N  LYS B1101           
SHEET    3   B 4 GLY B1040  GLY B1044  1  O  PHE B1041   N  ILE B1075           
SHEET    4   B 4 LEU B1152  VAL B1154  1  N  LEU B1153   O  GLY B1040           
LINK         OE1 GLU A 162                MG    MG A4003     1555   1555  1.95  
LINK         O   THR A 208                MG    MG A4002     1555   1555  2.07  
LINK         O   HOH A2060                MG    MG A4003     1555   1555  2.10  
LINK         O   HOH A2248                MG    MG A4003     1555   1555  2.08  
LINK         O   HOH A2385                MG    MG A4002     1555   1555  2.16  
LINK         O   HOH A2386                MG    MG A4002     1555   1555  2.14  
LINK         O   HOH A2387                MG    MG A4003     1555   1555  2.05  
LINK         O   HOH A2388                MG    MG A4003     1555   1555  2.12  
LINK         O1G APC A3001                MG    MG A4002     1555   1555  2.02  
LINK         O1A APC A3001                MG    MG A4002     1555   1555  1.94  
LINK         O2B APC A3001                MG    MG A4002     1555   1555  1.92  
LINK         O2A APC A3001                MG    MG A4003     1555   1555  2.27  
LINK         OD1 ASP B1124                MG    MG B4004     1555   1555  2.34  
LINK         O   HOH B2280                MG    MG B4004     1555   1555  2.38  
LINK         O   HOH B2367                MG    MG B4004     1555   1555  2.25  
LINK         O   HOH B2480                MG    MG B4004     1555   1555  2.03  
LINK         O   HOH B2481                MG    MG B4004     1555   1555  2.24  
LINK         O   HOH B2482                MG    MG B4004     1555   1555  1.94  
SITE     1 AC1  4 THR A 208  HOH A2385  HOH A2386  APC A3001                    
SITE     1 AC2  6 GLU A 162  HOH A2060  HOH A2248  HOH A2387                    
SITE     2 AC2  6 HOH A2388  APC A3001                                          
SITE     1 AC3  6 ASP B1124  HOH B2280  HOH B2367  HOH B2480                    
SITE     2 AC3  6 HOH B2481  HOH B2482                                          
SITE     1 AC4 30 LEU A  43  GLY A  44  ILE A  45  SER A  46                    
SITE     2 AC4 30 GLY A  48  GLN A  49  ASP A  50  SER A  51                    
SITE     3 AC4 30 ARG A  78  LEU A  79  GLN A  84  ARG A 139                    
SITE     4 AC4 30 THR A 157  LYS A 186  PRO A 207  THR A 208                    
SITE     5 AC4 30 ALA A 209  HOH A2036  HOH A2039  HOH A2040                    
SITE     6 AC4 30 HOH A2057  HOH A2117  HOH A2118  HOH A2125                    
SITE     7 AC4 30 HOH A2128  HOH A2385  HOH A2386  HOH A2388                    
SITE     8 AC4 30  MG A4002   MG A4003                                          
CRYST1   52.599   85.411   60.253  90.00 110.88  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019012  0.000000  0.007251        0.00000                         
SCALE2      0.000000  0.011708  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.017763        0.00000