HEADER    DNA                                     19-APR-01   1IHH              
TITLE     2.4 ANGSTROM CRYSTAL STRUCTURE OF AN OXALIPLATIN 1,2-D(GPG)           
TITLE    2 INTRASTRAND CROSS-LINK IN A DNA DODECAMER DUPLEX                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3';              
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3';              
COMPND   7 CHAIN: B;                                                            
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 MOL_ID: 2;                                                           
SOURCE   4 SYNTHETIC: YES                                                       
KEYWDS    RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, OXALIPLATIN,     
KEYWDS   2 MODIFIED, DEOXYNUCLEIC ACID, DNA                                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    B.SPINGLER,D.A.WHITTINGTON,S.J.LIPPARD                                
REVDAT   4   07-FEB-24 1IHH    1       REMARK LINK                              
REVDAT   3   24-JUL-19 1IHH    1       REMARK                                   
REVDAT   2   24-FEB-09 1IHH    1       VERSN                                    
REVDAT   1   26-OCT-01 1IHH    0                                                
JRNL        AUTH   B.SPINGLER,D.A.WHITTINGTON,S.J.LIPPARD                       
JRNL        TITL   2.4 A CRYSTAL STRUCTURE OF AN OXALIPLATIN 1,2-D(GPG)         
JRNL        TITL 2 INTRASTRAND CROSS-LINK IN A DNA DODECAMER DUPLEX.            
JRNL        REF    INORG.CHEM.                   V.  40  5596 2001              
JRNL        REFN                   ISSN 0020-1669                               
JRNL        PMID   11599959                                                     
JRNL        DOI    10.1021/IC010790T                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.40 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SHELXL-97                                            
REMARK   3   AUTHORS     : G.M.SHELDRICK                                        
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 100.00                         
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 4.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 93.7                           
REMARK   3   CROSS-VALIDATION METHOD           : FREE R                         
REMARK   3   FREE R VALUE TEST SET SELECTION   : RANDOM                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (NO CUTOFF).                         
REMARK   3   R VALUE   (WORKING + TEST SET, NO CUTOFF) : NULL                   
REMARK   3   R VALUE          (WORKING SET, NO CUTOFF) : 0.230                  
REMARK   3   FREE R VALUE                  (NO CUTOFF) : 0.287                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000                 
REMARK   3   FREE R VALUE TEST SET COUNT   (NO CUTOFF) : 487                    
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (NO CUTOFF) : 6296                   
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).                     
REMARK   3   R VALUE   (WORKING + TEST SET, F>4SIG(F)) : NULL                   
REMARK   3   R VALUE          (WORKING SET, F>4SIG(F)) : 0.209                  
REMARK   3   FREE R VALUE                  (F>4SIG(F)) : 0.256                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 10.000                 
REMARK   3   FREE R VALUE TEST SET COUNT   (F>4SIG(F)) : 631                    
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (F>4SIG(F)) : 4935                   
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS      : 0                                             
REMARK   3   NUCLEIC ACID ATOMS : 486                                           
REMARK   3   HETEROGEN ATOMS    : 10                                            
REMARK   3   SOLVENT ATOMS      : 12                                            
REMARK   3                                                                      
REMARK   3  MODEL REFINEMENT.                                                   
REMARK   3   OCCUPANCY SUM OF NON-HYDROGEN ATOMS      : 508.00                  
REMARK   3   OCCUPANCY SUM OF HYDROGEN ATOMS          : 0.00                    
REMARK   3   NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL                    
REMARK   3   NUMBER OF LEAST-SQUARES PARAMETERS       : 2052                    
REMARK   3   NUMBER OF RESTRAINTS                     : 2360                    
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.                        
REMARK   3   BOND LENGTHS                         (A) : 0.007                   
REMARK   3   ANGLE DISTANCES                      (A) : 0.021                   
REMARK   3   SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.106                   
REMARK   3   DISTANCES FROM RESTRAINT PLANES      (A) : 0.001                   
REMARK   3   ZERO CHIRAL VOLUMES               (A**3) : 0.000                   
REMARK   3   NON-ZERO CHIRAL VOLUMES           (A**3) : 0.006                   
REMARK   3   ANTI-BUMPING DISTANCE RESTRAINTS     (A) : NULL                    
REMARK   3   RIGID-BOND ADP COMPONENTS         (A**2) : NULL                    
REMARK   3   SIMILAR ADP COMPONENTS            (A**2) : NULL                    
REMARK   3   APPROXIMATELY ISOTROPIC ADPS      (A**2) : NULL                    
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED: NULL                                                  
REMARK   3                                                                      
REMARK   3  STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER                      
REMARK   3   SPECIAL CASE: NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1IHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-01.                  
REMARK 100 THE DEPOSITION ID IS D_1000013271.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 27-FEB-00; 10-FEB-00               
REMARK 200  TEMPERATURE           (KELVIN) : 103; 173                           
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 2                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y; Y                               
REMARK 200  RADIATION SOURCE               : SSRL; APS                          
REMARK 200  BEAMLINE                       : BL9-1; 19-ID                       
REMARK 200  X-RAY GENERATOR MODEL          : NULL; NULL                         
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M; M                               
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.970;                             
REMARK 200                                   1.0721,1.0724,1.0277,1.1206        
REMARK 200  MONOCHROMATOR                  : NULL; NULL                         
REMARK 200  OPTICS                         : NULL; NULL                         
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE; CCD                   
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH; CUSTOM-MADE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 6296                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.400                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 100.000                            
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 93.7                               
REMARK 200  DATA REDUNDANCY                : 9.760                              
REMARK 200  R MERGE                    (I) : 0.08900                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 18.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.44                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 69.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.36800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD                         
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD                          
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 55.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM CACODYLATE, SPERMINE*4HCL,   
REMARK 280  BACL2, ETHYL ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP,        
REMARK 280  TEMPERATURE 277K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X,Y,-Z                                                 
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z+1/2                                       
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z+1/2                                     
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       20.97100            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       25.62300            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       43.52450            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       20.97100            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       25.62300            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       43.52450            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       20.97100            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       25.62300            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       43.52450            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       20.97100            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       25.62300            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       43.52450            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC A   1   O4' -  C1' -  N1  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DG B   2   C3' -  C2' -  C1' ANGL. DEV. =  -5.5 DEGREES          
REMARK 500     DG B   4   C3' -  C2' -  C1' ANGL. DEV. =  -4.9 DEGREES          
REMARK 500     DG B   4   O4' -  C1' -  N9  ANGL. DEV. =   4.8 DEGREES          
REMARK 500     DA B   8   O4' -  C4' -  C3' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500     DA B   8   C5' -  C4' -  C3' ANGL. DEV. =   7.8 DEGREES          
REMARK 500     DA B   8   O4' -  C1' -  N9  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DA B  10   O4' -  C1' -  N9  ANGL. DEV. =  -4.5 DEGREES          
REMARK 500     DG B  11   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              PT A  41  PT                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DG A   6   N7                                                     
REMARK 620 2  DG A   6   O6   60.9                                              
REMARK 620 3  DG A   7   N7   98.4  77.7                                        
REMARK 620 4  DG A   7   O6  112.4  51.6  65.4                                  
REMARK 620 5 DNH A  40   N1  155.0 104.6  97.8  58.6                            
REMARK 620 6 DNH A  40   N2   79.6 100.8 177.9 114.9  84.0                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              BA B  42  BA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DA B  10   N7                                                     
REMARK 620 2  DG B  11   O6   90.2                                              
REMARK 620 3  DG B  11   N7   69.3  65.9                                        
REMARK 620 4 HOH B 107   O   137.4  86.1  70.6                                  
REMARK 620 N                    1     2     3                                   
DBREF  1IHH A    1    12  PDB    1IHH     1IHH             1     12             
DBREF  1IHH B    1    12  PDB    1IHH     1IHH             1     12             
SEQRES   1 A   12   DC  DC  DT  DC  DT  DG  DG  DT  DC  DT  DC  DC              
SEQRES   1 B   12   DG  DG  DA  DG  DA  DC  DC  DA  DG  DA  DG  DG              
HET     PT  A  41       1                                                       
HET    DNH  A  40       8                                                       
HET     BA  B  42       1                                                       
HETNAM      PT PLATINUM (II) ION                                                
HETNAM     DNH 1R,2R-DIAMINOCYCLOHEXANE                                         
HETNAM      BA BARIUM ION                                                       
FORMUL   3   PT    PT 2+                                                        
FORMUL   4  DNH    C6 H14 N2                                                    
FORMUL   5   BA    BA 2+                                                        
FORMUL   6  HOH   *12(H2 O)                                                     
LINK         N7   DG A   6                PT    PT A  41     1555   1555  1.98  
LINK         O6   DG A   6                PT    PT A  41     1555   1555  3.57  
LINK         N7   DG A   7                PT    PT A  41     1555   1555  1.95  
LINK         O6   DG A   7                PT    PT A  41     1555   1555  3.40  
LINK         N1  DNH A  40                PT    PT A  41     1555   1555  2.03  
LINK         N2  DNH A  40                PT    PT A  41     1555   1555  2.04  
LINK         N7   DA B  10                BA    BA B  42     1555   1555  3.11  
LINK         O6   DG B  11                BA    BA B  42     1555   1555  3.10  
LINK         N7   DG B  11                BA    BA B  42     1555   1555  2.56  
LINK        BA    BA B  42                 O   HOH B 107     1555   1555  3.04  
SITE     1 AC1  3  DG A   6   DG A   7  DNH A  40                               
SITE     1 AC2  3  DA B  10   DG B  11  HOH B 107                               
SITE     1 AC3  4  DT A   5   DG A   6   DG A   7   PT A  41                    
CRYST1   41.942   51.246   87.049  90.00  90.00  90.00 I 2 2 2       8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.023842  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.019514  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011488        0.00000