HEADER REPLICATION 20-APR-01 1II7 TITLE CRYSTAL STRUCTURE OF P. FURIOSUS MRE11 WITH MANGANESE AND DAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRE11 NUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAD50, MRE11, DNA DOUBLE-STRAND BREAK REPAIR, DAMP, MANGANESE, KEYWDS 2 REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.-P.HOPFNER,A.KARCHER,L.CRAIG,T.T.WOO,J.P.CARNEY,J.A.TAINER REVDAT 5 29-MAY-24 1II7 1 REMARK HET LINK SITE REVDAT 5 2 1 ATOM REVDAT 4 07-FEB-24 1II7 1 REMARK LINK REVDAT 3 24-FEB-09 1II7 1 VERSN REVDAT 2 01-APR-03 1II7 1 JRNL REVDAT 1 30-MAY-01 1II7 0 JRNL AUTH K.P.HOPFNER,A.KARCHER,L.CRAIG,T.T.WOO,J.P.CARNEY,J.A.TAINER JRNL TITL STRUCTURAL BIOCHEMISTRY AND INTERACTION ARCHITECTURE OF THE JRNL TITL 2 DNA DOUBLE-STRAND BREAK REPAIR MRE11 NUCLEASE AND JRNL TITL 3 RAD50-ATPASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 105 473 2001 JRNL REFN ISSN 0092-8674 JRNL PMID 11371344 JRNL DOI 10.1016/S0092-8674(01)00335-X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH&HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1830015.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 47867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2397 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6548 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 368 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.65000 REMARK 3 B22 (A**2) : 9.14000 REMARK 3 B33 (A**2) : -3.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.240 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 60.71 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1II7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 431781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES, 400 MM AMMONIUM SULFATE, REMARK 280 35% OEG 6K, 1 MM MANGANESE, 10 MM DAMP, PH 9.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.14500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.56000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.56000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 333 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG B 332 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 89 CG CD OE1 NE2 REMARK 480 ARG A 90 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 152 CD OE1 OE2 REMARK 480 LYS A 155 CD CE NZ REMARK 480 ARG A 163 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 244 CD CE NZ REMARK 480 LYS A 246 CG CD CE NZ REMARK 480 LYS A 277 CD CE NZ REMARK 480 LYS A 279 CD CE NZ REMARK 480 ARG A 291 CD NE CZ NH1 NH2 REMARK 480 LYS A 298 CG CD CE NZ REMARK 480 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 310 CD CE NZ REMARK 480 ILE A 333 OXT REMARK 480 LYS B 111 CE NZ REMARK 480 GLU B 112 CG CD OE1 OE2 REMARK 480 LYS B 113 CE NZ REMARK 480 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 155 CG CD CE NZ REMARK 480 ARG B 163 CD NE CZ NH1 NH2 REMARK 480 ARG B 177 NE CZ NH1 NH2 REMARK 480 ARG B 237 NE CZ NH1 NH2 REMARK 480 ILE B 243 CG1 CG2 REMARK 480 ARG B 248 CD NE CZ NH1 NH2 REMARK 480 GLU B 283 CB CG CD OE1 OE2 REMARK 480 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 287 CG CD CE NZ REMARK 480 LYS B 290 CG CD CE NZ REMARK 480 LYS B 298 CB CG CD CE NZ REMARK 480 ARG B 309 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 310 CB CG CD CE NZ REMARK 480 GLU B 319 CG CD OE1 OE2 REMARK 480 LYS B 327 CE NZ REMARK 480 TRP B 331 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP B 331 CZ2 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 333 CA - C - O ANGL. DEV. = 38.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 125.65 -170.78 REMARK 500 LYS A 136 -120.20 51.08 REMARK 500 ALA A 182 4.28 -68.13 REMARK 500 TYR A 201 133.67 -170.27 REMARK 500 HIS A 206 -42.95 124.25 REMARK 500 ARG A 210 153.61 -47.70 REMARK 500 THR A 213 -157.93 -142.94 REMARK 500 ASP A 233 42.98 -97.17 REMARK 500 ILE A 243 -30.01 -139.29 REMARK 500 LYS B 136 -125.74 58.02 REMARK 500 ASN B 154 57.16 -147.30 REMARK 500 HIS B 206 -42.93 126.02 REMARK 500 ARG B 210 143.84 -39.90 REMARK 500 ASP B 233 46.85 -102.55 REMARK 500 THR B 330 138.08 -174.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 49 OD1 91.0 REMARK 620 3 D5M A 401 O3P 161.8 89.7 REMARK 620 4 HOH A 407 O 74.9 85.4 87.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASN A 84 OD1 99.1 REMARK 620 3 D5M A 401 O2P 92.8 87.8 REMARK 620 4 HOH A 407 O 82.2 170.5 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 406 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 ASP B 49 OD2 88.6 REMARK 620 3 PO4 B 402 O3 155.1 92.7 REMARK 620 4 HOH B 408 O 72.7 83.4 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 405 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 49 OD2 REMARK 620 2 ASN B 84 OD1 101.0 REMARK 620 3 PO4 B 402 O1 93.7 89.6 REMARK 620 4 HOH B 408 O 73.1 165.3 77.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D5M A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1II8 RELATED DB: PDB REMARK 900 RELATED ID: 1F2T RELATED DB: PDB REMARK 900 RELATED ID: 1F2U RELATED DB: PDB DBREF 1II7 A 1 333 UNP Q8U1N9 MRE11_PYRFU 1 333 DBREF 1II7 B 1 333 UNP Q8U1N9 MRE11_PYRFU 1 333 SEQRES 1 A 333 MET LYS PHE ALA HIS LEU ALA ASP ILE HIS LEU GLY TYR SEQRES 2 A 333 GLU GLN PHE HIS LYS PRO GLN ARG GLU GLU GLU PHE ALA SEQRES 3 A 333 GLU ALA PHE LYS ASN ALA LEU GLU ILE ALA VAL GLN GLU SEQRES 4 A 333 ASN VAL ASP PHE ILE LEU ILE ALA GLY ASP LEU PHE HIS SEQRES 5 A 333 SER SER ARG PRO SER PRO GLY THR LEU LYS LYS ALA ILE SEQRES 6 A 333 ALA LEU LEU GLN ILE PRO LYS GLU HIS SER ILE PRO VAL SEQRES 7 A 333 PHE ALA ILE GLU GLY ASN HIS ASP ARG THR GLN ARG GLY SEQRES 8 A 333 PRO SER VAL LEU ASN LEU LEU GLU ASP PHE GLY LEU VAL SEQRES 9 A 333 TYR VAL ILE GLY MET ARG LYS GLU LYS VAL GLU ASN GLU SEQRES 10 A 333 TYR LEU THR SER GLU ARG LEU GLY ASN GLY GLU TYR LEU SEQRES 11 A 333 VAL LYS GLY VAL TYR LYS ASP LEU GLU ILE HIS GLY MET SEQRES 12 A 333 LYS TYR MET SER SER ALA TRP PHE GLU ALA ASN LYS GLU SEQRES 13 A 333 ILE LEU LYS ARG LEU PHE ARG PRO THR ASP ASN ALA ILE SEQRES 14 A 333 LEU MET LEU HIS GLN GLY VAL ARG GLU VAL SER GLU ALA SEQRES 15 A 333 ARG GLY GLU ASP TYR PHE GLU ILE GLY LEU GLY ASP LEU SEQRES 16 A 333 PRO GLU GLY TYR LEU TYR TYR ALA LEU GLY HIS ILE HIS SEQRES 17 A 333 LYS ARG TYR GLU THR SER TYR SER GLY SER PRO VAL VAL SEQRES 18 A 333 TYR PRO GLY SER LEU GLU ARG TRP ASP PHE GLY ASP TYR SEQRES 19 A 333 GLU VAL ARG TYR GLU TRP ASP GLY ILE LYS PHE LYS GLU SEQRES 20 A 333 ARG TYR GLY VAL ASN LYS GLY PHE TYR ILE VAL GLU ASP SEQRES 21 A 333 PHE LYS PRO ARG PHE VAL GLU ILE LYS VAL ARG PRO PHE SEQRES 22 A 333 ILE ASP VAL LYS ILE LYS GLY SER GLU GLU GLU ILE ARG SEQRES 23 A 333 LYS ALA ILE LYS ARG LEU ILE PRO LEU ILE PRO LYS ASN SEQRES 24 A 333 ALA TYR VAL ARG LEU ASN ILE GLY TRP ARG LYS PRO PHE SEQRES 25 A 333 ASP LEU THR GLU ILE LYS GLU LEU LEU ASN VAL GLU TYR SEQRES 26 A 333 LEU LYS ILE ASP THR TRP ARG ILE SEQRES 1 B 333 MET LYS PHE ALA HIS LEU ALA ASP ILE HIS LEU GLY TYR SEQRES 2 B 333 GLU GLN PHE HIS LYS PRO GLN ARG GLU GLU GLU PHE ALA SEQRES 3 B 333 GLU ALA PHE LYS ASN ALA LEU GLU ILE ALA VAL GLN GLU SEQRES 4 B 333 ASN VAL ASP PHE ILE LEU ILE ALA GLY ASP LEU PHE HIS SEQRES 5 B 333 SER SER ARG PRO SER PRO GLY THR LEU LYS LYS ALA ILE SEQRES 6 B 333 ALA LEU LEU GLN ILE PRO LYS GLU HIS SER ILE PRO VAL SEQRES 7 B 333 PHE ALA ILE GLU GLY ASN HIS ASP ARG THR GLN ARG GLY SEQRES 8 B 333 PRO SER VAL LEU ASN LEU LEU GLU ASP PHE GLY LEU VAL SEQRES 9 B 333 TYR VAL ILE GLY MET ARG LYS GLU LYS VAL GLU ASN GLU SEQRES 10 B 333 TYR LEU THR SER GLU ARG LEU GLY ASN GLY GLU TYR LEU SEQRES 11 B 333 VAL LYS GLY VAL TYR LYS ASP LEU GLU ILE HIS GLY MET SEQRES 12 B 333 LYS TYR MET SER SER ALA TRP PHE GLU ALA ASN LYS GLU SEQRES 13 B 333 ILE LEU LYS ARG LEU PHE ARG PRO THR ASP ASN ALA ILE SEQRES 14 B 333 LEU MET LEU HIS GLN GLY VAL ARG GLU VAL SER GLU ALA SEQRES 15 B 333 ARG GLY GLU ASP TYR PHE GLU ILE GLY LEU GLY ASP LEU SEQRES 16 B 333 PRO GLU GLY TYR LEU TYR TYR ALA LEU GLY HIS ILE HIS SEQRES 17 B 333 LYS ARG TYR GLU THR SER TYR SER GLY SER PRO VAL VAL SEQRES 18 B 333 TYR PRO GLY SER LEU GLU ARG TRP ASP PHE GLY ASP TYR SEQRES 19 B 333 GLU VAL ARG TYR GLU TRP ASP GLY ILE LYS PHE LYS GLU SEQRES 20 B 333 ARG TYR GLY VAL ASN LYS GLY PHE TYR ILE VAL GLU ASP SEQRES 21 B 333 PHE LYS PRO ARG PHE VAL GLU ILE LYS VAL ARG PRO PHE SEQRES 22 B 333 ILE ASP VAL LYS ILE LYS GLY SER GLU GLU GLU ILE ARG SEQRES 23 B 333 LYS ALA ILE LYS ARG LEU ILE PRO LEU ILE PRO LYS ASN SEQRES 24 B 333 ALA TYR VAL ARG LEU ASN ILE GLY TRP ARG LYS PRO PHE SEQRES 25 B 333 ASP LEU THR GLU ILE LYS GLU LEU LEU ASN VAL GLU TYR SEQRES 26 B 333 LEU LYS ILE ASP THR TRP ARG ILE HET MN A 403 1 HET MN A 404 1 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET D5M A 401 22 HET PO4 B 402 5 HET MN B 405 1 HET MN B 406 1 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM D5M 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 3 MN 4(MN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 D5M C10 H14 N5 O6 P FORMUL 9 PO4 O4 P 3- FORMUL 12 HOH *264(H2 O) HELIX 1 1 GLU A 14 HIS A 17 5 4 HELIX 2 2 LYS A 18 GLU A 39 1 22 HELIX 3 3 SER A 57 GLU A 73 1 17 HELIX 4 4 SER A 93 PHE A 101 1 9 HELIX 5 5 SER A 147 ALA A 153 1 7 HELIX 6 6 GLU A 156 PHE A 162 1 7 HELIX 7 7 VAL A 176 ALA A 182 1 7 HELIX 8 8 GLY A 191 LEU A 195 5 5 HELIX 9 9 ASP A 230 TYR A 234 5 5 HELIX 10 10 SER A 281 ILE A 293 1 13 HELIX 11 11 PRO A 294 ILE A 296 5 3 HELIX 12 12 LEU A 314 LEU A 321 1 8 HELIX 13 13 GLU B 14 HIS B 17 5 4 HELIX 14 14 LYS B 18 GLU B 39 1 22 HELIX 15 15 SER B 57 HIS B 74 1 18 HELIX 16 16 SER B 93 PHE B 101 1 9 HELIX 17 17 SER B 147 ALA B 153 1 7 HELIX 18 18 GLU B 156 PHE B 162 1 7 HELIX 19 19 VAL B 176 ARG B 183 1 8 HELIX 20 20 GLY B 191 LEU B 195 5 5 HELIX 21 21 ASP B 230 TYR B 234 5 5 HELIX 22 22 SER B 281 ILE B 293 1 13 HELIX 23 23 PRO B 294 ILE B 296 5 3 HELIX 24 24 LEU B 314 ASN B 322 1 9 SHEET 1 A 6 TYR A 105 VAL A 106 0 SHEET 2 A 6 VAL A 78 ILE A 81 1 O VAL A 78 N TYR A 105 SHEET 3 A 6 PHE A 43 ALA A 47 1 O ILE A 44 N PHE A 79 SHEET 4 A 6 LYS A 2 LEU A 6 1 O LYS A 2 N PHE A 43 SHEET 5 A 6 GLY A 254 GLU A 259 -1 O TYR A 256 N HIS A 5 SHEET 6 A 6 LYS A 262 GLU A 267 -1 O LYS A 262 N GLU A 259 SHEET 1 B 7 TYR A 211 TYR A 215 0 SHEET 2 B 7 SER A 218 TYR A 222 -1 O SER A 218 N TYR A 215 SHEET 3 B 7 TYR A 201 GLY A 205 1 N TYR A 202 O PRO A 219 SHEET 4 B 7 ALA A 168 HIS A 173 1 O ALA A 168 N TYR A 201 SHEET 5 B 7 LEU A 138 MET A 143 1 O GLU A 139 N ILE A 169 SHEET 6 B 7 TYR A 129 TYR A 135 -1 N GLY A 133 O ILE A 140 SHEET 7 B 7 GLY A 108 ARG A 110 -1 O GLY A 108 N VAL A 131 SHEET 1 C 7 TYR A 211 TYR A 215 0 SHEET 2 C 7 SER A 218 TYR A 222 -1 O SER A 218 N TYR A 215 SHEET 3 C 7 TYR A 201 GLY A 205 1 N TYR A 202 O PRO A 219 SHEET 4 C 7 ALA A 168 HIS A 173 1 O ALA A 168 N TYR A 201 SHEET 5 C 7 LEU A 138 MET A 143 1 O GLU A 139 N ILE A 169 SHEET 6 C 7 TYR A 129 TYR A 135 -1 N GLY A 133 O ILE A 140 SHEET 7 C 7 LEU A 119 ARG A 123 -1 O THR A 120 N LYS A 132 SHEET 1 D 5 PHE A 245 TYR A 249 0 SHEET 2 D 5 VAL A 236 TRP A 240 -1 N ARG A 237 O ARG A 248 SHEET 3 D 5 PHE A 273 GLY A 280 1 O PHE A 273 N VAL A 236 SHEET 4 D 5 TYR A 301 TRP A 308 1 O TYR A 301 N ILE A 274 SHEET 5 D 5 TYR A 325 ARG A 332 1 O TYR A 325 N VAL A 302 SHEET 1 E 6 TYR B 105 VAL B 106 0 SHEET 2 E 6 VAL B 78 ILE B 81 1 O VAL B 78 N TYR B 105 SHEET 3 E 6 PHE B 43 ALA B 47 1 O ILE B 44 N PHE B 79 SHEET 4 E 6 LYS B 2 LEU B 6 1 O LYS B 2 N PHE B 43 SHEET 5 E 6 GLY B 254 GLU B 259 -1 O TYR B 256 N HIS B 5 SHEET 6 E 6 LYS B 262 GLU B 267 -1 O LYS B 262 N GLU B 259 SHEET 1 F 3 LEU B 119 ARG B 123 0 SHEET 2 F 3 TYR B 129 TYR B 135 -1 N LEU B 130 O GLU B 122 SHEET 3 F 3 GLY B 108 ARG B 110 -1 O GLY B 108 N VAL B 131 SHEET 1 G 7 LEU B 119 ARG B 123 0 SHEET 2 G 7 TYR B 129 TYR B 135 -1 N LEU B 130 O GLU B 122 SHEET 3 G 7 LEU B 138 GLY B 142 -1 O LEU B 138 N TYR B 135 SHEET 4 G 7 ALA B 168 HIS B 173 1 O ILE B 169 N HIS B 141 SHEET 5 G 7 TYR B 201 GLY B 205 1 O TYR B 201 N LEU B 170 SHEET 6 G 7 SER B 218 TYR B 222 1 O PRO B 219 N TYR B 202 SHEET 7 G 7 TYR B 211 TYR B 215 -1 O TYR B 211 N TYR B 222 SHEET 1 H 5 PHE B 245 TYR B 249 0 SHEET 2 H 5 VAL B 236 TRP B 240 -1 N ARG B 237 O ARG B 248 SHEET 3 H 5 PHE B 273 LYS B 279 1 O PHE B 273 N VAL B 236 SHEET 4 H 5 TYR B 301 GLY B 307 1 O TYR B 301 N ILE B 274 SHEET 5 H 5 TYR B 325 ASP B 329 1 O TYR B 325 N VAL B 302 LINK OD1 ASP A 8 MN MN A 403 1555 1555 2.12 LINK OD1 ASP A 49 MN MN A 403 1555 1555 2.26 LINK OD1 ASP A 49 MN MN A 404 1555 1555 2.41 LINK OD1 ASN A 84 MN MN A 404 1555 1555 2.17 LINK O3P D5M A 401 MN MN A 403 1555 1555 2.26 LINK O2P D5M A 401 MN MN A 404 1555 1555 1.92 LINK MN MN A 403 O HOH A 407 1555 1555 2.22 LINK MN MN A 404 O HOH A 407 1555 1555 2.20 LINK OD1 ASP B 8 MN MN B 406 1555 1555 2.12 LINK OD2 ASP B 49 MN MN B 405 1555 1555 2.46 LINK OD2 ASP B 49 MN MN B 406 1555 1555 2.13 LINK OD1 ASN B 84 MN MN B 405 1555 1555 2.17 LINK O1 PO4 B 402 MN MN B 405 1555 1555 2.16 LINK O3 PO4 B 402 MN MN B 406 1555 1555 2.23 LINK MN MN B 405 O HOH B 408 1555 1555 2.28 LINK MN MN B 406 O HOH B 408 1555 1555 2.13 SITE 1 AC1 9 HIS B 10 ASP B 49 ASN B 84 HIS B 85 SITE 2 AC1 9 HIS B 206 HIS B 208 MN B 405 MN B 406 SITE 3 AC1 9 HOH B 408 SITE 1 AC2 7 ASP A 8 HIS A 10 ASP A 49 HIS A 208 SITE 2 AC2 7 D5M A 401 MN A 404 HOH A 407 SITE 1 AC3 7 ASP A 49 ASN A 84 HIS A 173 HIS A 206 SITE 2 AC3 7 D5M A 401 MN A 403 HOH A 407 SITE 1 AC4 7 ASP B 49 ASN B 84 HIS B 173 HIS B 206 SITE 2 AC4 7 PO4 B 402 MN B 406 HOH B 408 SITE 1 AC5 7 ASP B 8 HIS B 10 ASP B 49 HIS B 208 SITE 2 AC5 7 PO4 B 402 MN B 405 HOH B 408 SITE 1 AC6 4 SER A 53 HOH A 832 ARG B 55 HOH B 786 SITE 1 AC7 4 ARG A 87 MET A 146 SER A 147 TRP A 150 SITE 1 AC8 2 ARG A 160 LYS B 159 SITE 1 AC9 13 HIS A 10 ASP A 49 ASN A 84 HIS A 85 SITE 2 AC9 13 TYR A 187 HIS A 206 ILE A 207 HIS A 208 SITE 3 AC9 13 MN A 403 MN A 404 HOH A 407 HOH A 867 SITE 4 AC9 13 HOH A 887 CRYST1 74.290 88.740 145.120 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006891 0.00000