data_1ILC # _entry.id 1ILC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ILC pdb_00001ilc 10.2210/pdb1ilc/pdb NDB BD0052 ? ? RCSB RCSB013387 ? ? WWPDB D_1000013387 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-08 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ILC _pdbx_database_status.recvd_initial_deposition_date 2001-05-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hizver, J.' 1 'Rozenberg, H.' 2 'Frolow, F.' 3 'Rabinovich, D.' 4 'Shakked, Z.' 5 # _citation.id primary _citation.title 'DNA bending by an adenine--thymine tract and its role in gene regulation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 98 _citation.page_first 8490 _citation.page_last 8495 _citation.year 2001 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11438706 _citation.pdbx_database_id_DOI 10.1073/pnas.151247298 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hizver, J.' 1 ? primary 'Rozenberg, H.' 2 ? primary 'Frolow, F.' 3 ? primary 'Rabinovich, D.' 4 ? primary 'Shakked, Z.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*T)-3'" 3662.404 6 ? ? ? 'Human papillomavirus E2 DNA target' 2 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACCGAATTCGGT _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DG n 1 12 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DT 12 12 12 DT T A . n B 1 1 DA 1 13 13 DA A B . n B 1 2 DC 2 14 14 DC C B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DT 12 24 24 DT T B . n C 1 1 DA 1 25 25 DA A C . n C 1 2 DC 2 26 26 DC C C . n C 1 3 DC 3 27 27 DC C C . n C 1 4 DG 4 28 28 DG G C . n C 1 5 DA 5 29 29 DA A C . n C 1 6 DA 6 30 30 DA A C . n C 1 7 DT 7 31 31 DT T C . n C 1 8 DT 8 32 32 DT T C . n C 1 9 DC 9 33 33 DC C C . n C 1 10 DG 10 34 34 DG G C . n C 1 11 DG 11 35 35 DG G C . n C 1 12 DT 12 36 36 DT T C . n D 1 1 DA 1 37 37 DA A D . n D 1 2 DC 2 38 38 DC C D . n D 1 3 DC 3 39 39 DC C D . n D 1 4 DG 4 40 40 DG G D . n D 1 5 DA 5 41 41 DA A D . n D 1 6 DA 6 42 42 DA A D . n D 1 7 DT 7 43 43 DT T D . n D 1 8 DT 8 44 44 DT T D . n D 1 9 DC 9 45 45 DC C D . n D 1 10 DG 10 46 46 DG G D . n D 1 11 DG 11 47 47 DG G D . n D 1 12 DT 12 48 48 DT T D . n E 1 1 DA 1 49 49 DA A E . n E 1 2 DC 2 50 50 DC C E . n E 1 3 DC 3 51 51 DC C E . n E 1 4 DG 4 52 52 DG G E . n E 1 5 DA 5 53 53 DA A E . n E 1 6 DA 6 54 54 DA A E . n E 1 7 DT 7 55 55 DT T E . n E 1 8 DT 8 56 56 DT T E . n E 1 9 DC 9 57 57 DC C E . n E 1 10 DG 10 58 58 DG G E . n E 1 11 DG 11 59 59 DG G E . n E 1 12 DT 12 60 60 DT T E . n F 1 1 DA 1 61 61 DA A F . n F 1 2 DC 2 62 62 DC C F . n F 1 3 DC 3 63 63 DC C F . n F 1 4 DG 4 64 64 DG G F . n F 1 5 DA 5 65 65 DA A F . n F 1 6 DA 6 66 66 DA A F . n F 1 7 DT 7 67 67 DT T F . n F 1 8 DT 8 68 68 DT T F . n F 1 9 DC 9 69 69 DC C F . n F 1 10 DG 10 70 70 DG G F . n F 1 11 DG 11 71 71 DG G F . n F 1 12 DT 12 72 72 DT T F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 73 73 HOH HOH A . G 2 HOH 2 79 79 HOH HOH A . G 2 HOH 3 82 82 HOH HOH A . G 2 HOH 4 86 86 HOH HOH A . G 2 HOH 5 87 87 HOH HOH A . G 2 HOH 6 89 89 HOH HOH A . G 2 HOH 7 90 90 HOH HOH A . G 2 HOH 8 99 99 HOH HOH A . G 2 HOH 9 116 116 HOH HOH A . G 2 HOH 10 117 117 HOH HOH A . G 2 HOH 11 121 121 HOH HOH A . G 2 HOH 12 133 133 HOH HOH A . G 2 HOH 13 134 134 HOH HOH A . G 2 HOH 14 151 151 HOH HOH A . G 2 HOH 15 156 156 HOH HOH A . G 2 HOH 16 173 173 HOH HOH A . G 2 HOH 17 174 174 HOH HOH A . G 2 HOH 18 175 175 HOH HOH A . G 2 HOH 19 176 176 HOH HOH A . G 2 HOH 20 182 182 HOH HOH A . G 2 HOH 21 183 183 HOH HOH A . H 2 HOH 1 74 74 HOH HOH B . H 2 HOH 2 75 75 HOH HOH B . H 2 HOH 3 76 76 HOH HOH B . H 2 HOH 4 77 77 HOH HOH B . H 2 HOH 5 78 78 HOH HOH B . H 2 HOH 6 80 80 HOH HOH B . H 2 HOH 7 81 81 HOH HOH B . H 2 HOH 8 83 83 HOH HOH B . H 2 HOH 9 84 84 HOH HOH B . H 2 HOH 10 85 85 HOH HOH B . H 2 HOH 11 88 88 HOH HOH B . H 2 HOH 12 113 113 HOH HOH B . H 2 HOH 13 118 118 HOH HOH B . H 2 HOH 14 119 119 HOH HOH B . H 2 HOH 15 120 120 HOH HOH B . H 2 HOH 16 123 123 HOH HOH B . H 2 HOH 17 124 124 HOH HOH B . H 2 HOH 18 139 139 HOH HOH B . H 2 HOH 19 142 142 HOH HOH B . H 2 HOH 20 152 152 HOH HOH B . H 2 HOH 21 157 157 HOH HOH B . H 2 HOH 22 181 181 HOH HOH B . H 2 HOH 23 184 184 HOH HOH B . H 2 HOH 24 185 185 HOH HOH B . I 2 HOH 1 91 91 HOH HOH C . I 2 HOH 2 92 92 HOH HOH C . I 2 HOH 3 93 93 HOH HOH C . I 2 HOH 4 94 94 HOH HOH C . I 2 HOH 5 95 95 HOH HOH C . I 2 HOH 6 97 97 HOH HOH C . I 2 HOH 7 107 107 HOH HOH C . I 2 HOH 8 108 108 HOH HOH C . I 2 HOH 9 109 109 HOH HOH C . I 2 HOH 10 112 112 HOH HOH C . I 2 HOH 11 114 114 HOH HOH C . I 2 HOH 12 115 115 HOH HOH C . I 2 HOH 13 125 125 HOH HOH C . I 2 HOH 14 130 130 HOH HOH C . I 2 HOH 15 131 131 HOH HOH C . I 2 HOH 16 146 146 HOH HOH C . I 2 HOH 17 150 150 HOH HOH C . I 2 HOH 18 159 159 HOH HOH C . I 2 HOH 19 172 172 HOH HOH C . I 2 HOH 20 177 177 HOH HOH C . I 2 HOH 21 178 178 HOH HOH C . I 2 HOH 22 180 180 HOH HOH C . J 2 HOH 1 96 96 HOH HOH D . J 2 HOH 2 98 98 HOH HOH D . J 2 HOH 3 122 122 HOH HOH D . J 2 HOH 4 126 126 HOH HOH D . J 2 HOH 5 140 140 HOH HOH D . J 2 HOH 6 141 141 HOH HOH D . J 2 HOH 7 145 145 HOH HOH D . J 2 HOH 8 153 153 HOH HOH D . J 2 HOH 9 158 158 HOH HOH D . J 2 HOH 10 162 162 HOH HOH D . J 2 HOH 11 163 163 HOH HOH D . J 2 HOH 12 164 164 HOH HOH D . J 2 HOH 13 168 168 HOH HOH D . J 2 HOH 14 170 170 HOH HOH D . J 2 HOH 15 179 179 HOH HOH D . K 2 HOH 1 102 102 HOH HOH E . K 2 HOH 2 103 103 HOH HOH E . K 2 HOH 3 127 127 HOH HOH E . K 2 HOH 4 128 128 HOH HOH E . K 2 HOH 5 135 135 HOH HOH E . K 2 HOH 6 138 138 HOH HOH E . K 2 HOH 7 143 143 HOH HOH E . K 2 HOH 8 149 149 HOH HOH E . K 2 HOH 9 155 155 HOH HOH E . K 2 HOH 10 161 161 HOH HOH E . K 2 HOH 11 171 171 HOH HOH E . K 2 HOH 12 186 186 HOH HOH E . L 2 HOH 1 100 100 HOH HOH F . L 2 HOH 2 101 101 HOH HOH F . L 2 HOH 3 104 104 HOH HOH F . L 2 HOH 4 105 105 HOH HOH F . L 2 HOH 5 106 106 HOH HOH F . L 2 HOH 6 110 110 HOH HOH F . L 2 HOH 7 111 111 HOH HOH F . L 2 HOH 8 129 129 HOH HOH F . L 2 HOH 9 132 132 HOH HOH F . L 2 HOH 10 136 136 HOH HOH F . L 2 HOH 11 137 137 HOH HOH F . L 2 HOH 12 144 144 HOH HOH F . L 2 HOH 13 147 147 HOH HOH F . L 2 HOH 14 148 148 HOH HOH F . L 2 HOH 15 154 154 HOH HOH F . L 2 HOH 16 160 160 HOH HOH F . L 2 HOH 17 165 165 HOH HOH F . L 2 HOH 18 166 166 HOH HOH F . L 2 HOH 19 167 167 HOH HOH F . L 2 HOH 20 169 169 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MFT 'model building' . ? 1 ULTIMA 'model building' . ? 2 X-PLOR refinement 3.1 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 MFT phasing . ? 6 ULTIMA phasing . ? 7 # _cell.entry_id 1ILC _cell.length_a 39.821 _cell.length_b 40.160 _cell.length_c 39.460 _cell.angle_alpha 74.42 _cell.angle_beta 76.44 _cell.angle_gamma 59.90 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ILC _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1ILC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 57 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MPD, magnesium chloride, spermine.4HCl, Na cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 Mg2Cl ? ? ? 1 3 1 spermine.4HCl ? ? ? 1 4 1 'Na cacodylate' ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1997-11-10 _diffrn_detector.details 'Yale-type mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni filter + Yale-type mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-C' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1ILC _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 19.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 9810 _reflns.number_all 9810 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.0510000 _reflns.pdbx_Rsym_value 0.0510000 _reflns.pdbx_netI_over_sigmaI 25.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.24 _reflns_shell.percent_possible_all 95.0 _reflns_shell.Rmerge_I_obs 0.6540000 _reflns_shell.pdbx_Rsym_value 0.6540000 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 491 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ILC _refine.ls_number_reflns_obs 8475 _refine.ls_number_reflns_all 9810 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 86.4 _refine.ls_R_factor_obs 0.2240000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2220000 _refine.ls_R_factor_R_free 0.2920000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 456 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 30.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;REFINEMENT STARTED WITH X-PLOR 3.1 USING B-DNA FIBER MODEL ALL DATA INCLUDED. REFINEMENT CONTINUED IN SHELXL-97 WITH THE OPTION HOPE FOR ANISOTROPIC SCALING TO CORRECT SIGNIFICANT ANISOTROPY IN THE DATA. THE CORRECTED OBSERVED STRUCTURE FACTORS WITH F<0 WERE EXCLUDED FROM REFINEMENT. REFINEMENT FURTHER CONTINUED WITH X-PLOR 3.1. ; _refine.pdbx_starting_model 'Fiber model of B-DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Parkinson et al.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1458 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 1572 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 19.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 17.7 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.2 _refine_ls_shell.d_res_low 2.3 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.3300000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3700000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM_NDBX.DNA _pdbx_xplor_file.topol_file TOP_NDBX.DNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1ILC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ILC _struct.title 'DNA Bending by an Adenine-Thymine Tract and Its Role in Gene Regulation.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ILC _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA DOUBLE HELIX, DODECAMER DUPLEX, HPV E2 DNA TARGET, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ILC _struct_ref.pdbx_db_accession 1ILC _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ILC A 1 ? 12 ? 1ILC 1 ? 12 ? 1 12 2 1 1ILC B 1 ? 12 ? 1ILC 13 ? 24 ? 13 24 3 1 1ILC C 1 ? 12 ? 1ILC 25 ? 36 ? 25 36 4 1 1ILC D 1 ? 12 ? 1ILC 37 ? 48 ? 37 48 5 1 1ILC E 1 ? 12 ? 1ILC 49 ? 60 ? 49 60 6 1 1ILC F 1 ? 12 ? 1ILC 61 ? 72 ? 61 72 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 1 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 1 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 12 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 12 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 25 D DT 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 25 D DT 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 27 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 27 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 27 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 28 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 28 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 28 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 29 D DT 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 29 D DT 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 30 D DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 30 D DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 31 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 31 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 34 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 34 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 34 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 35 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 35 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 35 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 1 N1 ? ? C DT 36 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 36 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 49 F DT 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 49 F DT 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 50 F DG 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 50 F DG 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 50 F DG 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 10 N1 ? ? E DC 51 F DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 10 O6 ? ? E DC 51 F DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 10 N2 ? ? E DC 51 F DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 9 N3 ? ? E DG 52 F DC 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 9 O2 ? ? E DG 52 F DC 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 9 N4 ? ? E DG 52 F DC 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 53 F DT 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 53 F DT 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 54 F DT 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 54 F DT 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 55 F DA 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 55 F DA 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 56 F DA 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 56 F DA 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DC 9 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 57 F DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DC 9 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 57 F DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DC 9 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 57 F DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DG 10 N1 ? ? ? 1_555 F DC 3 N3 ? ? E DG 58 F DC 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DG 10 N2 ? ? ? 1_555 F DC 3 O2 ? ? E DG 58 F DC 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E DG 10 O6 ? ? ? 1_555 F DC 3 N4 ? ? E DG 58 F DC 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 2 N3 ? ? E DG 59 F DC 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 2 O2 ? ? E DG 59 F DC 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 2 N4 ? ? E DG 59 F DC 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E DT 12 N3 ? ? ? 1_555 F DA 1 N1 ? ? E DT 60 F DA 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E DT 12 O4 ? ? ? 1_555 F DA 1 N6 ? ? E DT 60 F DA 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 E _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 58 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 E _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 186 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1ILC _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 12 1_555 -0.061 -0.363 -0.218 -6.136 -11.185 2.350 1 A_DA1:DT24_B A 1 ? B 24 ? 20 1 1 A DC 2 1_555 B DG 11 1_555 -0.057 -0.288 -0.086 2.541 -3.408 -0.880 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.270 -0.312 -0.236 6.339 -3.304 -1.503 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.032 -0.195 0.123 11.242 -10.069 -2.196 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.230 -0.123 -0.016 3.673 -10.872 5.796 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.377 -0.082 0.242 -1.056 -12.422 1.350 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.065 -0.019 0.338 -5.526 -14.580 -3.800 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.115 -0.161 0.399 -17.026 -21.023 0.727 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.299 -0.160 0.331 -17.746 0.747 1.812 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.300 -0.351 -0.127 -8.070 -4.628 -1.507 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DG 11 1_555 B DC 2 1_555 0.108 -0.300 0.312 0.718 -5.965 -2.909 11 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DT 12 1_555 B DA 1 1_555 -0.275 -0.190 -0.213 -1.686 -6.868 1.480 12 A_DT12:DA13_B A 12 ? B 13 ? 20 1 1 C DA 1 1_555 D DT 12 1_555 -0.017 -0.097 0.116 1.085 -5.179 1.551 13 C_DA25:DT48_D C 25 ? D 48 ? 20 1 1 C DC 2 1_555 D DG 11 1_555 0.238 -0.067 0.165 6.705 -7.956 -1.294 14 C_DC26:DG47_D C 26 ? D 47 ? 19 1 1 C DC 3 1_555 D DG 10 1_555 0.303 -0.076 -0.395 13.832 -9.279 3.324 15 C_DC27:DG46_D C 27 ? D 46 ? 19 1 1 C DG 4 1_555 D DC 9 1_555 -0.394 -0.187 -0.628 10.681 -11.521 4.090 16 C_DG28:DC45_D C 28 ? D 45 ? 19 1 1 C DA 5 1_555 D DT 8 1_555 0.311 -0.014 0.273 12.072 -15.548 4.856 17 C_DA29:DT44_D C 29 ? D 44 ? 20 1 1 C DA 6 1_555 D DT 7 1_555 0.415 -0.205 0.425 3.465 -15.571 -2.762 18 C_DA30:DT43_D C 30 ? D 43 ? 20 1 1 C DT 7 1_555 D DA 6 1_555 -0.212 -0.236 0.411 -2.321 -16.506 -1.392 19 C_DT31:DA42_D C 31 ? D 42 ? 20 1 1 C DT 8 1_555 D DA 5 1_555 0.108 -0.313 -0.187 -3.275 -19.599 1.220 20 C_DT32:DA41_D C 32 ? D 41 ? 20 1 1 C DC 9 1_555 D DG 4 1_555 0.152 -0.197 0.308 -11.649 -17.543 -3.726 21 C_DC33:DG40_D C 33 ? D 40 ? 19 1 1 C DG 10 1_555 D DC 3 1_555 -0.046 -0.286 0.252 3.218 -2.922 -2.812 22 C_DG34:DC39_D C 34 ? D 39 ? 19 1 1 C DG 11 1_555 D DC 2 1_555 -0.056 -0.304 0.479 0.400 -16.354 -4.869 23 C_DG35:DC38_D C 35 ? D 38 ? 19 1 1 C DT 12 1_555 D DA 1 1_555 -0.016 -0.244 0.027 -3.160 -5.189 -1.686 24 C_DT36:DA37_D C 36 ? D 37 ? 20 1 1 E DA 1 1_555 F DT 12 1_555 -0.337 -0.292 0.296 3.766 -3.213 2.832 25 E_DA49:DT72_F E 49 ? F 72 ? 20 1 1 E DC 2 1_555 F DG 11 1_555 0.248 -0.327 0.292 -0.265 -3.687 0.377 26 E_DC50:DG71_F E 50 ? F 71 ? 19 1 1 E DC 3 1_555 F DG 10 1_555 -0.226 -0.305 -0.256 12.260 -3.418 -5.120 27 E_DC51:DG70_F E 51 ? F 70 ? 19 1 1 E DG 4 1_555 F DC 9 1_555 -0.186 0.205 0.233 15.351 -11.596 7.574 28 E_DG52:DC69_F E 52 ? F 69 ? 19 1 1 E DA 5 1_555 F DT 8 1_555 0.032 -0.193 0.098 8.481 -15.964 2.302 29 E_DA53:DT68_F E 53 ? F 68 ? 20 1 1 E DA 6 1_555 F DT 7 1_555 -0.192 -0.469 0.041 -2.212 -16.211 -0.824 30 E_DA54:DT67_F E 54 ? F 67 ? 20 1 1 E DT 7 1_555 F DA 6 1_555 -0.263 -0.385 -0.053 -0.146 -16.588 -1.928 31 E_DT55:DA66_F E 55 ? F 66 ? 20 1 1 E DT 8 1_555 F DA 5 1_555 -0.435 -0.418 0.057 -12.220 -17.777 -1.877 32 E_DT56:DA65_F E 56 ? F 65 ? 20 1 1 E DC 9 1_555 F DG 4 1_555 -0.166 0.067 -0.215 -13.765 -7.152 4.093 33 E_DC57:DG64_F E 57 ? F 64 ? 19 1 1 E DG 10 1_555 F DC 3 1_555 0.220 -0.315 0.486 7.400 3.342 -0.901 34 E_DG58:DC63_F E 58 ? F 63 ? 19 1 1 E DG 11 1_555 F DC 2 1_555 0.166 -0.227 0.389 6.323 -9.742 -3.883 35 E_DG59:DC62_F E 59 ? F 62 ? 19 1 1 E DT 12 1_555 F DA 1 1_555 0.152 -0.461 0.303 -8.783 -6.075 -1.928 36 E_DT60:DA61_F E 60 ? F 61 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.366 -0.068 3.106 -2.355 -2.584 33.001 0.294 0.264 3.120 -4.533 4.131 33.180 1 AA_DA1DC2:DG23DT24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DC 3 1_555 B DG 10 1_555 0.854 0.677 3.256 3.892 2.424 34.294 0.758 -0.826 3.368 4.088 -6.564 34.590 2 AA_DC2DC3:DG22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.506 0.734 3.215 -3.070 4.297 34.814 0.572 0.379 3.311 7.130 5.095 35.200 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.014 -0.372 3.365 1.339 0.033 38.894 -0.563 0.146 3.363 0.049 -2.010 38.916 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.008 -0.823 3.351 -1.660 -0.023 36.147 -1.321 -0.253 3.348 -0.038 2.674 36.184 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.488 -1.029 3.279 -2.246 -0.557 28.781 -1.939 0.475 3.326 -1.118 4.509 28.872 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.171 -0.414 3.415 0.483 0.659 38.844 -0.706 0.319 3.406 0.990 -0.726 38.853 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.086 0.405 3.348 -3.045 -2.003 42.303 0.767 -0.434 3.312 -2.770 4.210 42.452 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.057 0.712 3.165 3.775 0.682 25.717 1.400 1.134 3.141 1.522 -8.421 25.997 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DG 11 1_555 B DC 2 1_555 -1.011 0.429 3.032 -7.368 1.521 36.821 0.476 0.648 3.183 2.377 11.517 37.556 10 AA_DG10DG11:DC14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DT 12 1_555 B DA 1 1_555 0.652 -0.220 3.411 6.491 -2.336 32.227 0.036 0.028 3.479 -4.149 -11.529 32.937 11 AA_DG11DT12:DA13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C DA 1 1_555 D DT 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.041 -0.575 3.231 -2.576 -0.229 28.786 -1.101 -0.484 3.226 -0.460 5.167 28.900 12 CC_DA25DC26:DG47DT48_DD C 25 ? D 48 ? C 26 ? D 47 ? 1 C DC 2 1_555 D DG 11 1_555 C DC 3 1_555 D DG 10 1_555 0.062 -0.067 3.137 6.319 3.118 32.723 -0.611 0.895 3.076 5.456 -11.056 33.453 13 CC_DC26DC27:DG46DG47_DD C 26 ? D 47 ? C 27 ? D 46 ? 1 C DC 3 1_555 D DG 10 1_555 C DG 4 1_555 D DC 9 1_555 -0.767 0.358 3.447 1.170 9.019 31.913 -0.989 1.554 3.391 16.001 -2.075 33.151 14 CC_DC27DG28:DC45DG46_DD C 27 ? D 46 ? C 28 ? D 45 ? 1 C DG 4 1_555 D DC 9 1_555 C DA 5 1_555 D DT 8 1_555 0.363 0.154 3.165 -5.402 1.796 41.759 0.036 -1.041 3.101 2.506 7.536 42.128 15 CC_DG28DA29:DT44DC45_DD C 28 ? D 45 ? C 29 ? D 44 ? 1 C DA 5 1_555 D DT 8 1_555 C DA 6 1_555 D DT 7 1_555 -0.273 -0.747 3.399 -4.896 0.644 34.604 -1.346 -0.317 3.390 1.075 8.179 34.944 16 CC_DA29DA30:DT43DT44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C DA 6 1_555 D DT 7 1_555 C DT 7 1_555 D DA 6 1_555 -0.010 -0.852 3.289 0.757 -7.108 30.430 -0.186 0.168 3.395 -13.312 -1.419 31.239 17 CC_DA30DT31:DA42DT43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C DT 7 1_555 D DA 6 1_555 C DT 8 1_555 D DA 5 1_555 -0.042 -0.284 3.167 6.274 0.895 39.466 -0.515 0.758 3.117 1.315 -9.218 39.952 18 CC_DT31DT32:DA41DA42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C DT 8 1_555 D DA 5 1_555 C DC 9 1_555 D DG 4 1_555 0.406 0.118 3.470 -2.874 1.948 39.759 -0.065 -0.946 3.436 2.858 4.216 39.904 19 CC_DT32DC33:DG40DA41_DD C 32 ? D 41 ? C 33 ? D 40 ? 1 C DC 9 1_555 D DG 4 1_555 C DG 10 1_555 D DC 3 1_555 -0.551 0.624 2.951 -1.076 6.616 28.970 -0.070 0.865 3.033 13.007 2.115 29.720 20 CC_DC33DG34:DC39DG40_DD C 33 ? D 40 ? C 34 ? D 39 ? 1 C DG 10 1_555 D DC 3 1_555 C DG 11 1_555 D DC 2 1_555 -0.525 0.114 3.367 -4.131 -0.737 36.201 0.288 0.244 3.402 -1.181 6.621 36.436 21 CC_DG34DG35:DC38DC39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C DG 11 1_555 D DC 2 1_555 C DT 12 1_555 D DA 1 1_555 1.071 -0.163 3.339 4.618 -8.806 39.882 0.770 -1.001 3.396 -12.672 -6.645 41.054 22 CC_DG35DT36:DA37DC38_DD C 35 ? D 38 ? C 36 ? D 37 ? 1 E DA 1 1_555 F DT 12 1_555 E DC 2 1_555 F DG 11 1_555 -0.092 -0.216 3.585 -1.992 -3.245 31.748 0.254 -0.229 3.588 -5.905 3.625 31.969 23 EE_DA49DC50:DG71DT72_FF E 49 ? F 72 ? E 50 ? F 71 ? 1 E DC 2 1_555 F DG 11 1_555 E DC 3 1_555 F DG 10 1_555 0.187 -0.111 2.921 6.901 6.552 28.197 -1.450 0.934 2.793 12.989 -13.682 29.728 24 EE_DC50DC51:DG70DG71_FF E 50 ? F 71 ? E 51 ? F 70 ? 1 E DC 3 1_555 F DG 10 1_555 E DG 4 1_555 F DC 9 1_555 -0.214 0.735 3.268 -2.877 2.897 35.516 0.775 -0.072 3.322 4.729 4.697 35.742 25 EE_DC51DG52:DC69DG70_FF E 51 ? F 70 ? E 52 ? F 69 ? 1 E DG 4 1_555 F DC 9 1_555 E DA 5 1_555 F DT 8 1_555 -0.163 0.047 3.324 -1.034 0.080 40.059 0.059 0.118 3.327 0.117 1.510 40.072 26 EE_DG52DA53:DT68DC69_FF E 52 ? F 69 ? E 53 ? F 68 ? 1 E DA 5 1_555 F DT 8 1_555 E DA 6 1_555 F DT 7 1_555 -0.168 -0.335 3.383 -0.742 -1.644 37.894 -0.297 0.161 3.396 -2.530 1.142 37.935 27 EE_DA53DA54:DT67DT68_FF E 53 ? F 68 ? E 54 ? F 67 ? 1 E DA 6 1_555 F DT 7 1_555 E DT 7 1_555 F DA 6 1_555 -0.097 -0.970 3.172 0.649 0.641 29.612 -2.028 0.322 3.148 1.254 -1.270 29.625 28 EE_DA54DT55:DA66DT67_FF E 54 ? F 67 ? E 55 ? F 66 ? 1 E DT 7 1_555 F DA 6 1_555 E DT 8 1_555 F DA 5 1_555 -0.025 -0.246 3.543 0.319 0.563 37.365 -0.465 0.085 3.539 0.879 -0.499 37.370 29 EE_DT55DT56:DA65DA66_FF E 55 ? F 66 ? E 56 ? F 65 ? 1 E DT 8 1_555 F DA 5 1_555 E DC 9 1_555 F DG 4 1_555 0.578 0.764 3.221 3.596 0.858 41.228 0.990 -0.435 3.272 1.216 -5.094 41.386 30 EE_DT56DC57:DG64DA65_FF E 56 ? F 65 ? E 57 ? F 64 ? 1 E DC 9 1_555 F DG 4 1_555 E DG 10 1_555 F DC 3 1_555 0.382 1.044 2.965 -4.641 1.819 34.096 1.507 -1.300 2.939 3.082 7.863 34.448 31 EE_DC57DG58:DC63DG64_FF E 57 ? F 64 ? E 58 ? F 63 ? 1 E DG 10 1_555 F DC 3 1_555 E DG 11 1_555 F DC 2 1_555 -0.925 0.783 3.589 -1.635 1.866 35.738 0.976 1.243 3.661 3.036 2.660 35.821 32 EE_DG58DG59:DC62DC63_FF E 58 ? F 63 ? E 59 ? F 62 ? 1 E DG 11 1_555 F DC 2 1_555 E DT 12 1_555 F DA 1 1_555 0.869 -0.264 3.754 2.546 -6.968 36.055 0.687 -0.974 3.788 -11.113 -4.061 36.786 33 EE_DG59DT60:DA61DC62_FF E 59 ? F 62 ? E 60 ? F 61 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'standard B-DNA fiber coordinates' # _atom_sites.entry_id 1ILC _atom_sites.fract_transf_matrix[1][1] 0.025112 _atom_sites.fract_transf_matrix[1][2] -0.014557 _atom_sites.fract_transf_matrix[1][3] -0.003500 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028782 _atom_sites.fract_transf_matrix[2][3] -0.005253 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026499 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_