data_1ILD # _entry.id 1ILD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ILD pdb_00001ild 10.2210/pdb1ild/pdb RCSB RCSB013388 ? ? WWPDB D_1000013388 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QD5 'Wild type enzyme' unspecified PDB 1QD6 'Wild type enzyme in a dimeric arrangement' unspecified PDB 1FW2 . unspecified PDB 1FW3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ILD _pdbx_database_status.recvd_initial_deposition_date 2001-05-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Snijder, H.J.' 1 'Van Eerde, J.H.' 2 'Kingma, R.L.' 3 'Kalk, K.H.' 4 'Dekker, N.' 5 'Egmond, M.R.' 6 'Dijkstra, B.W.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural investigations of the active-site mutant Asn156Ala of outer membrane phospholipase A: function of the Asn-His interaction in the catalytic triad. ; 'Protein Sci.' 10 1962 1969 2001 PRCIEI US 0961-8368 0795 ? 11567087 10.1110/ps.17701 1 'Structural Evidence for Dimerization-Regulated Activation of an Integral Membrane Phospholipase' Nature 401 717 721 1999 NATUAS UK 0028-0836 0006 ? ? 10.1038/44890 2 'Crystallization and Preliminary X-Ray Analysis of Outer Membrane Phospholipase A from Escherichia Coli' 'FEBS Lett.' 373 10 12 1995 FEBLAL NE 0014-5793 0165 ? ? '10.1016/0014-5793(95)01002-V' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Snijder, H.J.' 1 ? primary 'Van Eerde, J.H.' 2 ? primary 'Kingma, R.L.' 3 ? primary 'Kalk, K.H.' 4 ? primary 'Dekker, N.' 5 ? primary 'Egmond, M.R.' 6 ? primary 'Dijkstra, B.W.' 7 ? 1 'Snijder, H.J.' 8 ? 1 'Ubarretxena-Belandia, I.' 9 ? 1 'Blaauw, M.' 10 ? 1 'Kalk, K.H.' 11 ? 1 'Verheij, H.M.' 12 ? 1 'Egmond, M.R.' 13 ? 1 'Dekker, N.' 14 ? 1 'Dijkstra, B.W.' 15 ? 2 'Blaauw, M.' 16 ? 2 'Dekker, N.' 17 ? 2 'Verheij, H.M.' 18 ? 2 'Kalk, K.H.' 19 ? 2 'Dijkstra, B.W.' 20 ? # _cell.entry_id 1ILD _cell.length_a 78.484 _cell.length_b 78.484 _cell.length_c 101.669 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ILD _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'OUTER MEMBRANE PHOSPHOLIPASE A' 31493.852 1 3.1.1.32 N156A ? ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 5 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'OMPLA, DETERGENT-RESISTANT PHOSPHOLIPASE A, DR-PHOSPHOLIPASE A, PHOSPHATIDYLCHOLINE 1-ACYLHYDROLASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ARIRAPQEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLA FPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRS WARLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKH VRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF ; _entity_poly.pdbx_seq_one_letter_code_can ;ARIRAPQEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLA FPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRS WARLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKH VRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ARG n 1 3 ILE n 1 4 ARG n 1 5 ALA n 1 6 PRO n 1 7 GLN n 1 8 GLU n 1 9 ALA n 1 10 THR n 1 11 VAL n 1 12 LYS n 1 13 GLU n 1 14 VAL n 1 15 HIS n 1 16 ASP n 1 17 ALA n 1 18 PRO n 1 19 ALA n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 SER n 1 24 ILE n 1 25 ILE n 1 26 ALA n 1 27 ASN n 1 28 MET n 1 29 LEU n 1 30 GLN n 1 31 GLU n 1 32 HIS n 1 33 ASP n 1 34 ASN n 1 35 PRO n 1 36 PHE n 1 37 THR n 1 38 LEU n 1 39 TYR n 1 40 PRO n 1 41 TYR n 1 42 ASP n 1 43 THR n 1 44 ASN n 1 45 TYR n 1 46 LEU n 1 47 ILE n 1 48 TYR n 1 49 THR n 1 50 GLN n 1 51 THR n 1 52 SER n 1 53 ASP n 1 54 LEU n 1 55 ASN n 1 56 LYS n 1 57 GLU n 1 58 ALA n 1 59 ILE n 1 60 ALA n 1 61 SER n 1 62 TYR n 1 63 ASP n 1 64 TRP n 1 65 ALA n 1 66 GLU n 1 67 ASN n 1 68 ALA n 1 69 ARG n 1 70 LYS n 1 71 ASP n 1 72 GLU n 1 73 VAL n 1 74 LYS n 1 75 PHE n 1 76 GLN n 1 77 LEU n 1 78 SER n 1 79 LEU n 1 80 ALA n 1 81 PHE n 1 82 PRO n 1 83 LEU n 1 84 TRP n 1 85 ARG n 1 86 GLY n 1 87 ILE n 1 88 LEU n 1 89 GLY n 1 90 PRO n 1 91 ASN n 1 92 SER n 1 93 VAL n 1 94 LEU n 1 95 GLY n 1 96 ALA n 1 97 SER n 1 98 TYR n 1 99 THR n 1 100 GLN n 1 101 LYS n 1 102 SER n 1 103 TRP n 1 104 TRP n 1 105 GLN n 1 106 LEU n 1 107 SER n 1 108 ASN n 1 109 SER n 1 110 GLU n 1 111 GLU n 1 112 SER n 1 113 SER n 1 114 PRO n 1 115 PHE n 1 116 ARG n 1 117 GLU n 1 118 THR n 1 119 ASN n 1 120 TYR n 1 121 GLU n 1 122 PRO n 1 123 GLN n 1 124 LEU n 1 125 PHE n 1 126 LEU n 1 127 GLY n 1 128 PHE n 1 129 ALA n 1 130 THR n 1 131 ASP n 1 132 TYR n 1 133 ARG n 1 134 PHE n 1 135 ALA n 1 136 GLY n 1 137 TRP n 1 138 THR n 1 139 LEU n 1 140 ARG n 1 141 ASP n 1 142 VAL n 1 143 GLU n 1 144 MET n 1 145 GLY n 1 146 TYR n 1 147 ASN n 1 148 HIS n 1 149 ASP n 1 150 SER n 1 151 ASN n 1 152 GLY n 1 153 ARG n 1 154 SER n 1 155 ASP n 1 156 PRO n 1 157 THR n 1 158 SER n 1 159 ARG n 1 160 SER n 1 161 TRP n 1 162 ALA n 1 163 ARG n 1 164 LEU n 1 165 TYR n 1 166 THR n 1 167 ARG n 1 168 LEU n 1 169 MET n 1 170 ALA n 1 171 GLU n 1 172 ASN n 1 173 GLY n 1 174 ASN n 1 175 TRP n 1 176 LEU n 1 177 VAL n 1 178 GLU n 1 179 VAL n 1 180 LYS n 1 181 PRO n 1 182 TRP n 1 183 TYR n 1 184 VAL n 1 185 VAL n 1 186 GLY n 1 187 ASN n 1 188 THR n 1 189 ASP n 1 190 ASP n 1 191 ASN n 1 192 PRO n 1 193 ASP n 1 194 ILE n 1 195 THR n 1 196 LYS n 1 197 TYR n 1 198 MET n 1 199 GLY n 1 200 TYR n 1 201 TYR n 1 202 GLN n 1 203 LEU n 1 204 LYS n 1 205 ILE n 1 206 GLY n 1 207 TYR n 1 208 HIS n 1 209 LEU n 1 210 GLY n 1 211 ASP n 1 212 ALA n 1 213 VAL n 1 214 LEU n 1 215 SER n 1 216 ALA n 1 217 LYS n 1 218 GLY n 1 219 GLN n 1 220 TYR n 1 221 ASN n 1 222 TRP n 1 223 ASN n 1 224 THR n 1 225 GLY n 1 226 TYR n 1 227 GLY n 1 228 GLY n 1 229 ALA n 1 230 GLU n 1 231 LEU n 1 232 GLY n 1 233 LEU n 1 234 SER n 1 235 TYR n 1 236 PRO n 1 237 ILE n 1 238 THR n 1 239 LYS n 1 240 HIS n 1 241 VAL n 1 242 ARG n 1 243 LEU n 1 244 TYR n 1 245 THR n 1 246 GLN n 1 247 VAL n 1 248 TYR n 1 249 SER n 1 250 GLY n 1 251 TYR n 1 252 GLY n 1 253 GLU n 1 254 SER n 1 255 LEU n 1 256 ILE n 1 257 ASP n 1 258 TYR n 1 259 ASN n 1 260 PHE n 1 261 ASN n 1 262 GLN n 1 263 THR n 1 264 ARG n 1 265 VAL n 1 266 GLY n 1 267 VAL n 1 268 GLY n 1 269 VAL n 1 270 MET n 1 271 LEU n 1 272 ASN n 1 273 ASP n 1 274 LEU n 1 275 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene pldA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA1_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRG ILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYT RLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQ VYSGYGESLIDYNFNQTRVGVGVMLNDLF ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_accession P0A921 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ILD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 275 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A921 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 289 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 269 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ILD ALA A 1 ? UNP P0A921 ? ? 'expression tag' -5 1 1 1ILD ARG A 2 ? UNP P0A921 ? ? 'expression tag' -4 2 1 1ILD ILE A 3 ? UNP P0A921 ? ? 'expression tag' -3 3 1 1ILD ARG A 4 ? UNP P0A921 ? ? 'expression tag' -2 4 1 1ILD ALA A 5 ? UNP P0A921 ? ? 'expression tag' -1 5 1 1ILD PRO A 6 ? UNP P0A921 ? ? 'expression tag' 0 6 1 1ILD ALA A 162 ? UNP P0A921 ASN 176 'engineered mutation' 156 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ILD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.13 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MPD, calcium chloride, Bis-Tris buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2000' _diffrn_detector.pdbx_collection_date 1999-01-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'YALE MIRRORS + NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ILD _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 9276 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.0640000 _reflns.pdbx_Rsym_value 0.0640000 _reflns.pdbx_netI_over_sigmaI 25.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.3430000 _reflns_shell.pdbx_Rsym_value 0.3430000 _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 453 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ILD _refine.ls_number_reflns_obs 9231 _refine.ls_number_reflns_all 9276 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2110000 _refine.ls_R_factor_R_free 0.2750000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -7.449 _refine.aniso_B[2][2] -7.449 _refine.aniso_B[3][3] 14.899 _refine.aniso_B[1][2] -12.686 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'Bulk solvent correction.' _refine.pdbx_starting_model '1QD5 MUTATED ACTIVE SITE RESIDUES to ALA AND GAVE ALL ATOMS A RANDOM SHIFT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ;SAME AS SET USED IN REFINEMENT OF THE NATIVE STRUCTURE (1QD5). FROM THE ADDITIONAL REFLECTIONS 10% WAS RANDOMLY SELECTED FOR THE TEST SET ; _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ILD _refine_analyze.Luzzati_coordinate_error_obs 0.2 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2091 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 2230 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.6 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1ILD _struct.title 'OUTER MEMBRANE PHOSPHOLIPASE A FROM ESCHERICHIA COLI N156A ACTIVE SITE MUTANT pH 4.6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ILD _struct_keywords.pdbx_keywords 'HYDROLASE, MEMBRANE PROTEIN' _struct_keywords.text 'ANTI-PARALLEL BETA BARREL, MEMBRANE PHOSPHOLIPASE, MEMBRANE PROTEIN, SERINE HYDROLASE, N156A, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? GLN A 30 ? SER A 17 GLN A 24 1 ? 8 HELX_P HELX_P2 2 ASN A 108 ? SER A 112 ? ASN A 102 SER A 106 5 ? 5 HELX_P HELX_P3 3 ILE A 194 ? GLY A 199 ? ILE A 188 GLY A 193 1 ? 6 HELX_P HELX_P4 4 SER A 254 ? TYR A 258 ? SER A 248 TYR A 252 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 155 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 149 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 156 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 150 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.47 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 14 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel A 13 14 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 39 ? PRO A 40 ? TYR A 33 PRO A 34 A 2 VAL A 73 ? ARG A 85 ? VAL A 67 ARG A 79 A 3 SER A 92 ? TRP A 104 ? SER A 86 TRP A 98 A 4 PHE A 115 ? PHE A 134 ? PHE A 109 PHE A 128 A 5 TRP A 137 ? SER A 150 ? TRP A 131 SER A 144 A 6 SER A 160 ? ASN A 172 ? SER A 154 ASN A 166 A 7 TRP A 175 ? VAL A 185 ? TRP A 169 VAL A 179 A 8 TYR A 201 ? LEU A 209 ? TYR A 195 LEU A 203 A 9 ALA A 212 ? TYR A 220 ? ALA A 206 TYR A 214 A 10 GLY A 227 ? PRO A 236 ? GLY A 221 PRO A 230 A 11 ARG A 242 ? GLY A 250 ? ARG A 236 GLY A 244 A 12 THR A 263 ? MET A 270 ? THR A 257 MET A 264 A 13 TYR A 45 ? THR A 51 ? TYR A 39 THR A 45 A 14 VAL A 73 ? ARG A 85 ? VAL A 67 ARG A 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 39 ? O TYR A 33 N ALA A 80 ? N ALA A 74 A 2 3 O TRP A 84 ? O TRP A 78 N LEU A 94 ? N LEU A 88 A 3 4 O TRP A 103 ? O TRP A 97 N ARG A 116 ? N ARG A 110 A 4 5 N PHE A 134 ? N PHE A 128 O TRP A 137 ? O TRP A 131 A 5 6 O ASP A 149 ? O ASP A 143 N TRP A 161 ? N TRP A 155 A 6 7 N ASN A 172 ? N ASN A 166 O TRP A 175 ? O TRP A 169 A 7 8 N LYS A 180 ? N LYS A 174 O GLN A 202 ? O GLN A 196 A 8 9 N LEU A 209 ? N LEU A 203 O ALA A 212 ? O ALA A 206 A 9 10 O GLN A 219 ? O GLN A 213 N GLY A 228 ? N GLY A 222 A 10 11 O TYR A 235 ? O TYR A 229 N LEU A 243 ? N LEU A 237 A 11 12 O TYR A 248 ? O TYR A 242 N ARG A 264 ? N ARG A 258 A 12 13 O VAL A 269 ? O VAL A 263 N LEU A 46 ? N LEU A 40 A 13 14 N ILE A 47 ? N ILE A 41 O LYS A 74 ? O LYS A 68 # _database_PDB_matrix.entry_id 1ILD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ILD _atom_sites.fract_transf_matrix[1][1] 0.012741 _atom_sites.fract_transf_matrix[1][2] 0.007356 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014713 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009836 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -5 ? ? ? A . n A 1 2 ARG 2 -4 ? ? ? A . n A 1 3 ILE 3 -3 ? ? ? A . n A 1 4 ARG 4 -2 ? ? ? A . n A 1 5 ALA 5 -1 ? ? ? A . n A 1 6 PRO 6 0 ? ? ? A . n A 1 7 GLN 7 1 ? ? ? A . n A 1 8 GLU 8 2 ? ? ? A . n A 1 9 ALA 9 3 ? ? ? A . n A 1 10 THR 10 4 ? ? ? A . n A 1 11 VAL 11 5 ? ? ? A . n A 1 12 LYS 12 6 ? ? ? A . n A 1 13 GLU 13 7 ? ? ? A . n A 1 14 VAL 14 8 ? ? ? A . n A 1 15 HIS 15 9 ? ? ? A . n A 1 16 ASP 16 10 ? ? ? A . n A 1 17 ALA 17 11 ? ? ? A . n A 1 18 PRO 18 12 ? ? ? A . n A 1 19 ALA 19 13 13 ALA ALA A . n A 1 20 VAL 20 14 14 VAL VAL A . n A 1 21 ARG 21 15 15 ARG ARG A . n A 1 22 GLY 22 16 16 GLY GLY A . n A 1 23 SER 23 17 17 SER SER A . n A 1 24 ILE 24 18 18 ILE ILE A . n A 1 25 ILE 25 19 19 ILE ILE A . n A 1 26 ALA 26 20 20 ALA ALA A . n A 1 27 ASN 27 21 21 ASN ASN A . n A 1 28 MET 28 22 22 MET MET A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 GLN 30 24 24 GLN GLN A . n A 1 31 GLU 31 25 25 GLU GLU A . n A 1 32 HIS 32 26 26 HIS HIS A . n A 1 33 ASP 33 27 27 ASP ASP A . n A 1 34 ASN 34 28 28 ASN ASN A . n A 1 35 PRO 35 29 29 PRO PRO A . n A 1 36 PHE 36 30 30 PHE PHE A . n A 1 37 THR 37 31 31 THR THR A . n A 1 38 LEU 38 32 32 LEU LEU A . n A 1 39 TYR 39 33 33 TYR TYR A . n A 1 40 PRO 40 34 34 PRO PRO A . n A 1 41 TYR 41 35 35 TYR TYR A . n A 1 42 ASP 42 36 36 ASP ASP A . n A 1 43 THR 43 37 37 THR THR A . n A 1 44 ASN 44 38 38 ASN ASN A . n A 1 45 TYR 45 39 39 TYR TYR A . n A 1 46 LEU 46 40 40 LEU LEU A . n A 1 47 ILE 47 41 41 ILE ILE A . n A 1 48 TYR 48 42 42 TYR TYR A . n A 1 49 THR 49 43 43 THR THR A . n A 1 50 GLN 50 44 44 GLN GLN A . n A 1 51 THR 51 45 45 THR THR A . n A 1 52 SER 52 46 46 SER SER A . n A 1 53 ASP 53 47 47 ASP ASP A . n A 1 54 LEU 54 48 48 LEU LEU A . n A 1 55 ASN 55 49 49 ASN ASN A . n A 1 56 LYS 56 50 50 LYS LYS A . n A 1 57 GLU 57 51 51 GLU GLU A . n A 1 58 ALA 58 52 52 ALA ALA A . n A 1 59 ILE 59 53 53 ILE ILE A . n A 1 60 ALA 60 54 54 ALA ALA A . n A 1 61 SER 61 55 55 SER SER A . n A 1 62 TYR 62 56 56 TYR TYR A . n A 1 63 ASP 63 57 57 ASP ASP A . n A 1 64 TRP 64 58 58 TRP TRP A . n A 1 65 ALA 65 59 59 ALA ALA A . n A 1 66 GLU 66 60 60 GLU GLU A . n A 1 67 ASN 67 61 61 ASN ASN A . n A 1 68 ALA 68 62 62 ALA ALA A . n A 1 69 ARG 69 63 63 ARG ARG A . n A 1 70 LYS 70 64 64 LYS LYS A . n A 1 71 ASP 71 65 65 ASP ASP A . n A 1 72 GLU 72 66 66 GLU GLU A . n A 1 73 VAL 73 67 67 VAL VAL A . n A 1 74 LYS 74 68 68 LYS LYS A . n A 1 75 PHE 75 69 69 PHE PHE A . n A 1 76 GLN 76 70 70 GLN GLN A . n A 1 77 LEU 77 71 71 LEU LEU A . n A 1 78 SER 78 72 72 SER SER A . n A 1 79 LEU 79 73 73 LEU LEU A . n A 1 80 ALA 80 74 74 ALA ALA A . n A 1 81 PHE 81 75 75 PHE PHE A . n A 1 82 PRO 82 76 76 PRO PRO A . n A 1 83 LEU 83 77 77 LEU LEU A . n A 1 84 TRP 84 78 78 TRP TRP A . n A 1 85 ARG 85 79 79 ARG ARG A . n A 1 86 GLY 86 80 80 GLY GLY A . n A 1 87 ILE 87 81 81 ILE ILE A . n A 1 88 LEU 88 82 82 LEU LEU A . n A 1 89 GLY 89 83 83 GLY GLY A . n A 1 90 PRO 90 84 84 PRO PRO A . n A 1 91 ASN 91 85 85 ASN ASN A . n A 1 92 SER 92 86 86 SER SER A . n A 1 93 VAL 93 87 87 VAL VAL A . n A 1 94 LEU 94 88 88 LEU LEU A . n A 1 95 GLY 95 89 89 GLY GLY A . n A 1 96 ALA 96 90 90 ALA ALA A . n A 1 97 SER 97 91 91 SER SER A . n A 1 98 TYR 98 92 92 TYR TYR A . n A 1 99 THR 99 93 93 THR THR A . n A 1 100 GLN 100 94 94 GLN GLN A . n A 1 101 LYS 101 95 95 LYS LYS A . n A 1 102 SER 102 96 96 SER SER A . n A 1 103 TRP 103 97 97 TRP TRP A . n A 1 104 TRP 104 98 98 TRP TRP A . n A 1 105 GLN 105 99 99 GLN GLN A . n A 1 106 LEU 106 100 100 LEU LEU A . n A 1 107 SER 107 101 101 SER SER A . n A 1 108 ASN 108 102 102 ASN ASN A . n A 1 109 SER 109 103 103 SER SER A . n A 1 110 GLU 110 104 104 GLU GLU A . n A 1 111 GLU 111 105 105 GLU GLU A . n A 1 112 SER 112 106 106 SER SER A . n A 1 113 SER 113 107 107 SER SER A . n A 1 114 PRO 114 108 108 PRO PRO A . n A 1 115 PHE 115 109 109 PHE PHE A . n A 1 116 ARG 116 110 110 ARG ARG A . n A 1 117 GLU 117 111 111 GLU GLU A . n A 1 118 THR 118 112 112 THR THR A . n A 1 119 ASN 119 113 113 ASN ASN A . n A 1 120 TYR 120 114 114 TYR TYR A . n A 1 121 GLU 121 115 115 GLU GLU A . n A 1 122 PRO 122 116 116 PRO PRO A . n A 1 123 GLN 123 117 117 GLN GLN A . n A 1 124 LEU 124 118 118 LEU LEU A . n A 1 125 PHE 125 119 119 PHE PHE A . n A 1 126 LEU 126 120 120 LEU LEU A . n A 1 127 GLY 127 121 121 GLY GLY A . n A 1 128 PHE 128 122 122 PHE PHE A . n A 1 129 ALA 129 123 123 ALA ALA A . n A 1 130 THR 130 124 124 THR THR A . n A 1 131 ASP 131 125 125 ASP ASP A . n A 1 132 TYR 132 126 126 TYR TYR A . n A 1 133 ARG 133 127 127 ARG ARG A . n A 1 134 PHE 134 128 128 PHE PHE A . n A 1 135 ALA 135 129 129 ALA ALA A . n A 1 136 GLY 136 130 130 GLY GLY A . n A 1 137 TRP 137 131 131 TRP TRP A . n A 1 138 THR 138 132 132 THR THR A . n A 1 139 LEU 139 133 133 LEU LEU A . n A 1 140 ARG 140 134 134 ARG ARG A . n A 1 141 ASP 141 135 135 ASP ASP A . n A 1 142 VAL 142 136 136 VAL VAL A . n A 1 143 GLU 143 137 137 GLU GLU A . n A 1 144 MET 144 138 138 MET MET A . n A 1 145 GLY 145 139 139 GLY GLY A . n A 1 146 TYR 146 140 140 TYR TYR A . n A 1 147 ASN 147 141 141 ASN ASN A . n A 1 148 HIS 148 142 142 HIS HIS A . n A 1 149 ASP 149 143 143 ASP ASP A . n A 1 150 SER 150 144 144 SER SER A . n A 1 151 ASN 151 145 145 ASN ASN A . n A 1 152 GLY 152 146 146 GLY GLY A . n A 1 153 ARG 153 147 147 ARG ARG A . n A 1 154 SER 154 148 148 SER SER A . n A 1 155 ASP 155 149 149 ASP ASP A . n A 1 156 PRO 156 150 150 PRO PRO A . n A 1 157 THR 157 151 151 THR THR A . n A 1 158 SER 158 152 152 SER SER A . n A 1 159 ARG 159 153 153 ARG ARG A . n A 1 160 SER 160 154 154 SER SER A . n A 1 161 TRP 161 155 155 TRP TRP A . n A 1 162 ALA 162 156 156 ALA ALA A . n A 1 163 ARG 163 157 157 ARG ARG A . n A 1 164 LEU 164 158 158 LEU LEU A . n A 1 165 TYR 165 159 159 TYR TYR A . n A 1 166 THR 166 160 160 THR THR A . n A 1 167 ARG 167 161 161 ARG ARG A . n A 1 168 LEU 168 162 162 LEU LEU A . n A 1 169 MET 169 163 163 MET MET A . n A 1 170 ALA 170 164 164 ALA ALA A . n A 1 171 GLU 171 165 165 GLU GLU A . n A 1 172 ASN 172 166 166 ASN ASN A . n A 1 173 GLY 173 167 167 GLY GLY A . n A 1 174 ASN 174 168 168 ASN ASN A . n A 1 175 TRP 175 169 169 TRP TRP A . n A 1 176 LEU 176 170 170 LEU LEU A . n A 1 177 VAL 177 171 171 VAL VAL A . n A 1 178 GLU 178 172 172 GLU GLU A . n A 1 179 VAL 179 173 173 VAL VAL A . n A 1 180 LYS 180 174 174 LYS LYS A . n A 1 181 PRO 181 175 175 PRO PRO A . n A 1 182 TRP 182 176 176 TRP TRP A . n A 1 183 TYR 183 177 177 TYR TYR A . n A 1 184 VAL 184 178 178 VAL VAL A . n A 1 185 VAL 185 179 179 VAL VAL A . n A 1 186 GLY 186 180 180 GLY GLY A . n A 1 187 ASN 187 181 181 ASN ASN A . n A 1 188 THR 188 182 182 THR THR A . n A 1 189 ASP 189 183 183 ASP ASP A . n A 1 190 ASP 190 184 184 ASP ASP A . n A 1 191 ASN 191 185 185 ASN ASN A . n A 1 192 PRO 192 186 186 PRO PRO A . n A 1 193 ASP 193 187 187 ASP ASP A . n A 1 194 ILE 194 188 188 ILE ILE A . n A 1 195 THR 195 189 189 THR THR A . n A 1 196 LYS 196 190 190 LYS LYS A . n A 1 197 TYR 197 191 191 TYR TYR A . n A 1 198 MET 198 192 192 MET MET A . n A 1 199 GLY 199 193 193 GLY GLY A . n A 1 200 TYR 200 194 194 TYR TYR A . n A 1 201 TYR 201 195 195 TYR TYR A . n A 1 202 GLN 202 196 196 GLN GLN A . n A 1 203 LEU 203 197 197 LEU LEU A . n A 1 204 LYS 204 198 198 LYS LYS A . n A 1 205 ILE 205 199 199 ILE ILE A . n A 1 206 GLY 206 200 200 GLY GLY A . n A 1 207 TYR 207 201 201 TYR TYR A . n A 1 208 HIS 208 202 202 HIS HIS A . n A 1 209 LEU 209 203 203 LEU LEU A . n A 1 210 GLY 210 204 204 GLY GLY A . n A 1 211 ASP 211 205 205 ASP ASP A . n A 1 212 ALA 212 206 206 ALA ALA A . n A 1 213 VAL 213 207 207 VAL VAL A . n A 1 214 LEU 214 208 208 LEU LEU A . n A 1 215 SER 215 209 209 SER SER A . n A 1 216 ALA 216 210 210 ALA ALA A . n A 1 217 LYS 217 211 211 LYS LYS A . n A 1 218 GLY 218 212 212 GLY GLY A . n A 1 219 GLN 219 213 213 GLN GLN A . n A 1 220 TYR 220 214 214 TYR TYR A . n A 1 221 ASN 221 215 215 ASN ASN A . n A 1 222 TRP 222 216 216 TRP TRP A . n A 1 223 ASN 223 217 217 ASN ASN A . n A 1 224 THR 224 218 218 THR THR A . n A 1 225 GLY 225 219 219 GLY GLY A . n A 1 226 TYR 226 220 220 TYR TYR A . n A 1 227 GLY 227 221 221 GLY GLY A . n A 1 228 GLY 228 222 222 GLY GLY A . n A 1 229 ALA 229 223 223 ALA ALA A . n A 1 230 GLU 230 224 224 GLU GLU A . n A 1 231 LEU 231 225 225 LEU LEU A . n A 1 232 GLY 232 226 226 GLY GLY A . n A 1 233 LEU 233 227 227 LEU LEU A . n A 1 234 SER 234 228 228 SER SER A . n A 1 235 TYR 235 229 229 TYR TYR A . n A 1 236 PRO 236 230 230 PRO PRO A . n A 1 237 ILE 237 231 231 ILE ILE A . n A 1 238 THR 238 232 232 THR THR A . n A 1 239 LYS 239 233 233 LYS LYS A . n A 1 240 HIS 240 234 234 HIS HIS A . n A 1 241 VAL 241 235 235 VAL VAL A . n A 1 242 ARG 242 236 236 ARG ARG A . n A 1 243 LEU 243 237 237 LEU LEU A . n A 1 244 TYR 244 238 238 TYR TYR A . n A 1 245 THR 245 239 239 THR THR A . n A 1 246 GLN 246 240 240 GLN GLN A . n A 1 247 VAL 247 241 241 VAL VAL A . n A 1 248 TYR 248 242 242 TYR TYR A . n A 1 249 SER 249 243 243 SER SER A . n A 1 250 GLY 250 244 244 GLY GLY A . n A 1 251 TYR 251 245 245 TYR TYR A . n A 1 252 GLY 252 246 246 GLY GLY A . n A 1 253 GLU 253 247 247 GLU GLU A . n A 1 254 SER 254 248 248 SER SER A . n A 1 255 LEU 255 249 249 LEU LEU A . n A 1 256 ILE 256 250 250 ILE ILE A . n A 1 257 ASP 257 251 251 ASP ASP A . n A 1 258 TYR 258 252 252 TYR TYR A . n A 1 259 ASN 259 253 253 ASN ASN A . n A 1 260 PHE 260 254 254 PHE PHE A . n A 1 261 ASN 261 255 255 ASN ASN A . n A 1 262 GLN 262 256 256 GLN GLN A . n A 1 263 THR 263 257 257 THR THR A . n A 1 264 ARG 264 258 258 ARG ARG A . n A 1 265 VAL 265 259 259 VAL VAL A . n A 1 266 GLY 266 260 260 GLY GLY A . n A 1 267 VAL 267 261 261 VAL VAL A . n A 1 268 GLY 268 262 262 GLY GLY A . n A 1 269 VAL 269 263 263 VAL VAL A . n A 1 270 MET 270 264 264 MET MET A . n A 1 271 LEU 271 265 265 LEU LEU A . n A 1 272 ASN 272 266 266 ASN ASN A . n A 1 273 ASP 273 267 267 ASP ASP A . n A 1 274 LEU 274 268 268 LEU LEU A . n A 1 275 PHE 275 269 269 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG 1 500 500 BOG BOG A . C 2 BOG 1 501 501 BOG BOG A . D 2 BOG 1 502 502 BOG BOG A . E 2 BOG 1 503 503 BOG BOG A . F 2 BOG 1 504 504 BOG BOG A . G 3 MPD 1 600 600 MPD MPD A . H 3 MPD 1 601 601 MPD MPD A . I 3 MPD 1 602 602 MPD MPD A . J 4 HOH 1 302 302 HOH TIP A . J 4 HOH 2 304 304 HOH TIP A . J 4 HOH 3 306 306 HOH TIP A . J 4 HOH 4 307 307 HOH TIP A . J 4 HOH 5 308 308 HOH TIP A . J 4 HOH 6 313 313 HOH TIP A . J 4 HOH 7 315 315 HOH TIP A . J 4 HOH 8 316 316 HOH TIP A . J 4 HOH 9 317 317 HOH TIP A . J 4 HOH 10 318 318 HOH TIP A . J 4 HOH 11 319 319 HOH TIP A . J 4 HOH 12 320 320 HOH TIP A . J 4 HOH 13 321 321 HOH TIP A . J 4 HOH 14 322 322 HOH TIP A . J 4 HOH 15 325 325 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-10-27 6 'Structure model' 1 5 2023-08-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Structure summary' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_site 6 4 'Structure model' struct_site_gen 7 5 'Structure model' chem_comp 8 5 'Structure model' database_2 9 5 'Structure model' struct_ref_seq_dif 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.mon_nstd_flag' 2 4 'Structure model' '_chem_comp.name' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 5 'Structure model' '_chem_comp.pdbx_synonyms' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 14 ? ? -47.58 71.29 2 1 TYR A 35 ? ? -99.27 -77.83 3 1 ASN A 49 ? ? -59.71 108.30 4 1 ASN A 61 ? ? -65.71 10.54 5 1 TRP A 78 ? ? -173.11 95.32 6 1 SER A 107 ? ? 29.49 63.42 7 1 ASP A 125 ? ? -145.95 46.04 8 1 ASP A 149 ? ? -46.76 157.21 9 1 ASN A 166 ? ? -165.17 94.51 10 1 ASN A 185 ? ? -171.82 65.74 11 1 TYR A 214 ? ? -160.53 113.46 12 1 TRP A 216 ? ? -48.52 -14.19 13 1 LEU A 265 ? ? -97.73 -85.79 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -5 ? A ALA 1 2 1 Y 1 A ARG -4 ? A ARG 2 3 1 Y 1 A ILE -3 ? A ILE 3 4 1 Y 1 A ARG -2 ? A ARG 4 5 1 Y 1 A ALA -1 ? A ALA 5 6 1 Y 1 A PRO 0 ? A PRO 6 7 1 Y 1 A GLN 1 ? A GLN 7 8 1 Y 1 A GLU 2 ? A GLU 8 9 1 Y 1 A ALA 3 ? A ALA 9 10 1 Y 1 A THR 4 ? A THR 10 11 1 Y 1 A VAL 5 ? A VAL 11 12 1 Y 1 A LYS 6 ? A LYS 12 13 1 Y 1 A GLU 7 ? A GLU 13 14 1 Y 1 A VAL 8 ? A VAL 14 15 1 Y 1 A HIS 9 ? A HIS 15 16 1 Y 1 A ASP 10 ? A ASP 16 17 1 Y 1 A ALA 11 ? A ALA 17 18 1 Y 1 A PRO 12 ? A PRO 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BOG C1 C N R 74 BOG O1 O N N 75 BOG C2 C N R 76 BOG O2 O N N 77 BOG C3 C N S 78 BOG O3 O N N 79 BOG C4 C N S 80 BOG O4 O N N 81 BOG C5 C N R 82 BOG O5 O N N 83 BOG C6 C N N 84 BOG O6 O N N 85 BOG "C1'" C N N 86 BOG "C2'" C N N 87 BOG "C3'" C N N 88 BOG "C4'" C N N 89 BOG "C5'" C N N 90 BOG "C6'" C N N 91 BOG "C7'" C N N 92 BOG "C8'" C N N 93 BOG H1 H N N 94 BOG H2 H N N 95 BOG HO2 H N N 96 BOG H3 H N N 97 BOG HO3 H N N 98 BOG H4 H N N 99 BOG HO4 H N N 100 BOG H5 H N N 101 BOG H61 H N N 102 BOG H62 H N N 103 BOG HO6 H N N 104 BOG "H1'1" H N N 105 BOG "H1'2" H N N 106 BOG "H2'1" H N N 107 BOG "H2'2" H N N 108 BOG "H3'1" H N N 109 BOG "H3'2" H N N 110 BOG "H4'1" H N N 111 BOG "H4'2" H N N 112 BOG "H5'1" H N N 113 BOG "H5'2" H N N 114 BOG "H6'1" H N N 115 BOG "H6'2" H N N 116 BOG "H7'1" H N N 117 BOG "H7'2" H N N 118 BOG "H8'1" H N N 119 BOG "H8'2" H N N 120 BOG "H8'3" H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 MPD C1 C N N 284 MPD C2 C N N 285 MPD O2 O N N 286 MPD CM C N N 287 MPD C3 C N N 288 MPD C4 C N S 289 MPD O4 O N N 290 MPD C5 C N N 291 MPD H11 H N N 292 MPD H12 H N N 293 MPD H13 H N N 294 MPD HO2 H N N 295 MPD HM1 H N N 296 MPD HM2 H N N 297 MPD HM3 H N N 298 MPD H31 H N N 299 MPD H32 H N N 300 MPD H4 H N N 301 MPD HO4 H N N 302 MPD H51 H N N 303 MPD H52 H N N 304 MPD H53 H N N 305 PHE N N N N 306 PHE CA C N S 307 PHE C C N N 308 PHE O O N N 309 PHE CB C N N 310 PHE CG C Y N 311 PHE CD1 C Y N 312 PHE CD2 C Y N 313 PHE CE1 C Y N 314 PHE CE2 C Y N 315 PHE CZ C Y N 316 PHE OXT O N N 317 PHE H H N N 318 PHE H2 H N N 319 PHE HA H N N 320 PHE HB2 H N N 321 PHE HB3 H N N 322 PHE HD1 H N N 323 PHE HD2 H N N 324 PHE HE1 H N N 325 PHE HE2 H N N 326 PHE HZ H N N 327 PHE HXT H N N 328 PRO N N N N 329 PRO CA C N S 330 PRO C C N N 331 PRO O O N N 332 PRO CB C N N 333 PRO CG C N N 334 PRO CD C N N 335 PRO OXT O N N 336 PRO H H N N 337 PRO HA H N N 338 PRO HB2 H N N 339 PRO HB3 H N N 340 PRO HG2 H N N 341 PRO HG3 H N N 342 PRO HD2 H N N 343 PRO HD3 H N N 344 PRO HXT H N N 345 SER N N N N 346 SER CA C N S 347 SER C C N N 348 SER O O N N 349 SER CB C N N 350 SER OG O N N 351 SER OXT O N N 352 SER H H N N 353 SER H2 H N N 354 SER HA H N N 355 SER HB2 H N N 356 SER HB3 H N N 357 SER HG H N N 358 SER HXT H N N 359 THR N N N N 360 THR CA C N S 361 THR C C N N 362 THR O O N N 363 THR CB C N R 364 THR OG1 O N N 365 THR CG2 C N N 366 THR OXT O N N 367 THR H H N N 368 THR H2 H N N 369 THR HA H N N 370 THR HB H N N 371 THR HG1 H N N 372 THR HG21 H N N 373 THR HG22 H N N 374 THR HG23 H N N 375 THR HXT H N N 376 TRP N N N N 377 TRP CA C N S 378 TRP C C N N 379 TRP O O N N 380 TRP CB C N N 381 TRP CG C Y N 382 TRP CD1 C Y N 383 TRP CD2 C Y N 384 TRP NE1 N Y N 385 TRP CE2 C Y N 386 TRP CE3 C Y N 387 TRP CZ2 C Y N 388 TRP CZ3 C Y N 389 TRP CH2 C Y N 390 TRP OXT O N N 391 TRP H H N N 392 TRP H2 H N N 393 TRP HA H N N 394 TRP HB2 H N N 395 TRP HB3 H N N 396 TRP HD1 H N N 397 TRP HE1 H N N 398 TRP HE3 H N N 399 TRP HZ2 H N N 400 TRP HZ3 H N N 401 TRP HH2 H N N 402 TRP HXT H N N 403 TYR N N N N 404 TYR CA C N S 405 TYR C C N N 406 TYR O O N N 407 TYR CB C N N 408 TYR CG C Y N 409 TYR CD1 C Y N 410 TYR CD2 C Y N 411 TYR CE1 C Y N 412 TYR CE2 C Y N 413 TYR CZ C Y N 414 TYR OH O N N 415 TYR OXT O N N 416 TYR H H N N 417 TYR H2 H N N 418 TYR HA H N N 419 TYR HB2 H N N 420 TYR HB3 H N N 421 TYR HD1 H N N 422 TYR HD2 H N N 423 TYR HE1 H N N 424 TYR HE2 H N N 425 TYR HH H N N 426 TYR HXT H N N 427 VAL N N N N 428 VAL CA C N S 429 VAL C C N N 430 VAL O O N N 431 VAL CB C N N 432 VAL CG1 C N N 433 VAL CG2 C N N 434 VAL OXT O N N 435 VAL H H N N 436 VAL H2 H N N 437 VAL HA H N N 438 VAL HB H N N 439 VAL HG11 H N N 440 VAL HG12 H N N 441 VAL HG13 H N N 442 VAL HG21 H N N 443 VAL HG22 H N N 444 VAL HG23 H N N 445 VAL HXT H N N 446 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BOG C1 O1 sing N N 70 BOG C1 C2 sing N N 71 BOG C1 O5 sing N N 72 BOG C1 H1 sing N N 73 BOG O1 "C1'" sing N N 74 BOG C2 O2 sing N N 75 BOG C2 C3 sing N N 76 BOG C2 H2 sing N N 77 BOG O2 HO2 sing N N 78 BOG C3 O3 sing N N 79 BOG C3 C4 sing N N 80 BOG C3 H3 sing N N 81 BOG O3 HO3 sing N N 82 BOG C4 O4 sing N N 83 BOG C4 C5 sing N N 84 BOG C4 H4 sing N N 85 BOG O4 HO4 sing N N 86 BOG C5 O5 sing N N 87 BOG C5 C6 sing N N 88 BOG C5 H5 sing N N 89 BOG C6 O6 sing N N 90 BOG C6 H61 sing N N 91 BOG C6 H62 sing N N 92 BOG O6 HO6 sing N N 93 BOG "C1'" "C2'" sing N N 94 BOG "C1'" "H1'1" sing N N 95 BOG "C1'" "H1'2" sing N N 96 BOG "C2'" "C3'" sing N N 97 BOG "C2'" "H2'1" sing N N 98 BOG "C2'" "H2'2" sing N N 99 BOG "C3'" "C4'" sing N N 100 BOG "C3'" "H3'1" sing N N 101 BOG "C3'" "H3'2" sing N N 102 BOG "C4'" "C5'" sing N N 103 BOG "C4'" "H4'1" sing N N 104 BOG "C4'" "H4'2" sing N N 105 BOG "C5'" "C6'" sing N N 106 BOG "C5'" "H5'1" sing N N 107 BOG "C5'" "H5'2" sing N N 108 BOG "C6'" "C7'" sing N N 109 BOG "C6'" "H6'1" sing N N 110 BOG "C6'" "H6'2" sing N N 111 BOG "C7'" "C8'" sing N N 112 BOG "C7'" "H7'1" sing N N 113 BOG "C7'" "H7'2" sing N N 114 BOG "C8'" "H8'1" sing N N 115 BOG "C8'" "H8'2" sing N N 116 BOG "C8'" "H8'3" sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 MPD C1 C2 sing N N 272 MPD C1 H11 sing N N 273 MPD C1 H12 sing N N 274 MPD C1 H13 sing N N 275 MPD C2 O2 sing N N 276 MPD C2 CM sing N N 277 MPD C2 C3 sing N N 278 MPD O2 HO2 sing N N 279 MPD CM HM1 sing N N 280 MPD CM HM2 sing N N 281 MPD CM HM3 sing N N 282 MPD C3 C4 sing N N 283 MPD C3 H31 sing N N 284 MPD C3 H32 sing N N 285 MPD C4 O4 sing N N 286 MPD C4 C5 sing N N 287 MPD C4 H4 sing N N 288 MPD O4 HO4 sing N N 289 MPD C5 H51 sing N N 290 MPD C5 H52 sing N N 291 MPD C5 H53 sing N N 292 PHE N CA sing N N 293 PHE N H sing N N 294 PHE N H2 sing N N 295 PHE CA C sing N N 296 PHE CA CB sing N N 297 PHE CA HA sing N N 298 PHE C O doub N N 299 PHE C OXT sing N N 300 PHE CB CG sing N N 301 PHE CB HB2 sing N N 302 PHE CB HB3 sing N N 303 PHE CG CD1 doub Y N 304 PHE CG CD2 sing Y N 305 PHE CD1 CE1 sing Y N 306 PHE CD1 HD1 sing N N 307 PHE CD2 CE2 doub Y N 308 PHE CD2 HD2 sing N N 309 PHE CE1 CZ doub Y N 310 PHE CE1 HE1 sing N N 311 PHE CE2 CZ sing Y N 312 PHE CE2 HE2 sing N N 313 PHE CZ HZ sing N N 314 PHE OXT HXT sing N N 315 PRO N CA sing N N 316 PRO N CD sing N N 317 PRO N H sing N N 318 PRO CA C sing N N 319 PRO CA CB sing N N 320 PRO CA HA sing N N 321 PRO C O doub N N 322 PRO C OXT sing N N 323 PRO CB CG sing N N 324 PRO CB HB2 sing N N 325 PRO CB HB3 sing N N 326 PRO CG CD sing N N 327 PRO CG HG2 sing N N 328 PRO CG HG3 sing N N 329 PRO CD HD2 sing N N 330 PRO CD HD3 sing N N 331 PRO OXT HXT sing N N 332 SER N CA sing N N 333 SER N H sing N N 334 SER N H2 sing N N 335 SER CA C sing N N 336 SER CA CB sing N N 337 SER CA HA sing N N 338 SER C O doub N N 339 SER C OXT sing N N 340 SER CB OG sing N N 341 SER CB HB2 sing N N 342 SER CB HB3 sing N N 343 SER OG HG sing N N 344 SER OXT HXT sing N N 345 THR N CA sing N N 346 THR N H sing N N 347 THR N H2 sing N N 348 THR CA C sing N N 349 THR CA CB sing N N 350 THR CA HA sing N N 351 THR C O doub N N 352 THR C OXT sing N N 353 THR CB OG1 sing N N 354 THR CB CG2 sing N N 355 THR CB HB sing N N 356 THR OG1 HG1 sing N N 357 THR CG2 HG21 sing N N 358 THR CG2 HG22 sing N N 359 THR CG2 HG23 sing N N 360 THR OXT HXT sing N N 361 TRP N CA sing N N 362 TRP N H sing N N 363 TRP N H2 sing N N 364 TRP CA C sing N N 365 TRP CA CB sing N N 366 TRP CA HA sing N N 367 TRP C O doub N N 368 TRP C OXT sing N N 369 TRP CB CG sing N N 370 TRP CB HB2 sing N N 371 TRP CB HB3 sing N N 372 TRP CG CD1 doub Y N 373 TRP CG CD2 sing Y N 374 TRP CD1 NE1 sing Y N 375 TRP CD1 HD1 sing N N 376 TRP CD2 CE2 doub Y N 377 TRP CD2 CE3 sing Y N 378 TRP NE1 CE2 sing Y N 379 TRP NE1 HE1 sing N N 380 TRP CE2 CZ2 sing Y N 381 TRP CE3 CZ3 doub Y N 382 TRP CE3 HE3 sing N N 383 TRP CZ2 CH2 doub Y N 384 TRP CZ2 HZ2 sing N N 385 TRP CZ3 CH2 sing Y N 386 TRP CZ3 HZ3 sing N N 387 TRP CH2 HH2 sing N N 388 TRP OXT HXT sing N N 389 TYR N CA sing N N 390 TYR N H sing N N 391 TYR N H2 sing N N 392 TYR CA C sing N N 393 TYR CA CB sing N N 394 TYR CA HA sing N N 395 TYR C O doub N N 396 TYR C OXT sing N N 397 TYR CB CG sing N N 398 TYR CB HB2 sing N N 399 TYR CB HB3 sing N N 400 TYR CG CD1 doub Y N 401 TYR CG CD2 sing Y N 402 TYR CD1 CE1 sing Y N 403 TYR CD1 HD1 sing N N 404 TYR CD2 CE2 doub Y N 405 TYR CD2 HD2 sing N N 406 TYR CE1 CZ doub Y N 407 TYR CE1 HE1 sing N N 408 TYR CE2 CZ sing Y N 409 TYR CE2 HE2 sing N N 410 TYR CZ OH sing N N 411 TYR OH HH sing N N 412 TYR OXT HXT sing N N 413 VAL N CA sing N N 414 VAL N H sing N N 415 VAL N H2 sing N N 416 VAL CA C sing N N 417 VAL CA CB sing N N 418 VAL CA HA sing N N 419 VAL C O doub N N 420 VAL C OXT sing N N 421 VAL CB CG1 sing N N 422 VAL CB CG2 sing N N 423 VAL CB HB sing N N 424 VAL CG1 HG11 sing N N 425 VAL CG1 HG12 sing N N 426 VAL CG1 HG13 sing N N 427 VAL CG2 HG21 sing N N 428 VAL CG2 HG22 sing N N 429 VAL CG2 HG23 sing N N 430 VAL OXT HXT sing N N 431 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QD5 _pdbx_initial_refinement_model.details '1QD5 MUTATED ACTIVE SITE RESIDUES to ALA AND GAVE ALL ATOMS A RANDOM SHIFT' #