HEADER LIGASE 20-SEP-96 1IOW TITLE COMPLEX OF Y216F D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL TITLE 2 PHOSPHINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALA\:D-ALA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DD-LIGASE, DDLB; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K12 SUBSTR. W3110; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: W3110; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTB2; SOURCE 8 EXPRESSION_SYSTEM_GENE: DDLB; SOURCE 9 OTHER_DETAILS: ENZYME PROVIDED BY C.T. WALSH, HARVARD MED SCHOOL. SOURCE 10 SEE SHI AND WALSH, BIOCHEM. 34, P. 2768, 1995. KEYWDS GLYCOGEN PHOSPHORYLASE, LIGASE, CELL WALL, PEPTIDOGLYCAN SYNTHESIS, KEYWDS 2 VANCOMYCIN, ADP BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KNOX,P.C.MOEWS,C.FAN REVDAT 7 22-MAY-24 1IOW 1 REMARK REVDAT 6 09-AUG-23 1IOW 1 REMARK REVDAT 5 03-NOV-21 1IOW 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1IOW 1 VERSN REVDAT 3 01-APR-03 1IOW 1 JRNL REVDAT 2 30-NOV-99 1IOW 1 JRNL HEADER REVDAT 1 12-FEB-97 1IOW 0 JRNL AUTH C.FAN,I.S.PARK,C.T.WALSH,J.R.KNOX JRNL TITL D-ALANINE:D-ALANINE LIGASE: PHOSPHONATE AND PHOSPHINATE JRNL TITL 2 INTERMEDIATES WITH WILD TYPE AND THE Y216F MUTANT. JRNL REF BIOCHEMISTRY V. 36 2531 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9054558 JRNL DOI 10.1021/BI962431T REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.FAN,P.C.MOEWS,Y.SHI,C.T.WALSH,J.R.KNOX REMARK 1 TITL A COMMON FOLD FOR PEPTIDE SYNTHETASES CLEAVING ATP TO ADP REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 92 1172 1995 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FAN,P.C.MOEWS,C.T.WALSH,J.R.KNOX REMARK 1 TITL VANCOMYCIN RESISTANCE: STRUCTURE OF D-ALANINE:D-ALANINE REMARK 1 TITL 2 LIGASE AT 2.3 A RESOLUTION REMARK 1 REF SCIENCE V. 266 439 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.0 REMARK 3 NUMBER OF REFLECTIONS : 12800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2735 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1995 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 2DLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 229 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 PRO A 275 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 73.41 122.03 REMARK 500 SER A 127 84.59 -51.72 REMARK 500 ASP A 128 -34.77 0.92 REMARK 500 ARG A 147 54.11 -112.81 REMARK 500 ALA A 159 138.86 72.69 REMARK 500 PRO A 186 176.81 -59.52 REMARK 500 TYR A 210 74.95 -69.61 REMARK 500 THR A 278 -174.16 -69.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 331 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 GLU A 270 OE2 86.2 REMARK 620 3 ADP A 310 O2B 172.0 86.3 REMARK 620 4 ADP A 310 O2A 99.1 87.7 83.3 REMARK 620 5 PHY A 320 O4P 95.4 101.0 83.3 163.5 REMARK 620 6 HOH A 407 O 89.5 170.8 98.3 85.0 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 330 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE2 REMARK 620 2 GLU A 270 OE1 57.3 REMARK 620 3 ASN A 272 OD1 102.2 90.2 REMARK 620 4 ADP A 310 O3B 88.7 97.3 168.9 REMARK 620 5 PHY A 320 O5P 110.2 163.4 81.5 93.1 REMARK 620 6 HOH A 401 O 151.9 95.2 81.7 89.5 97.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ADP REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ADP BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: LIG REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGAND BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHY A 320 DBREF 1IOW A 2 306 UNP P07862 DDLB_ECOLI 1 305 SEQADV 1IOW PHE A 216 UNP P07862 TYR 215 ENGINEERED MUTATION SEQRES 1 A 306 MET THR ASP LYS ILE ALA VAL LEU LEU GLY GLY THR SER SEQRES 2 A 306 ALA GLU ARG GLU VAL SER LEU ASN SER GLY ALA ALA VAL SEQRES 3 A 306 LEU ALA GLY LEU ARG GLU GLY GLY ILE ASP ALA TYR PRO SEQRES 4 A 306 VAL ASP PRO LYS GLU VAL ASP VAL THR GLN LEU LYS SER SEQRES 5 A 306 MET GLY PHE GLN LYS VAL PHE ILE ALA LEU HIS GLY ARG SEQRES 6 A 306 GLY GLY GLU ASP GLY THR LEU GLN GLY MET LEU GLU LEU SEQRES 7 A 306 MET GLY LEU PRO TYR THR GLY SER GLY VAL MET ALA SER SEQRES 8 A 306 ALA LEU SER MET ASP LYS LEU ARG SER LYS LEU LEU TRP SEQRES 9 A 306 GLN GLY ALA GLY LEU PRO VAL ALA PRO TRP VAL ALA LEU SEQRES 10 A 306 THR ARG ALA GLU PHE GLU LYS GLY LEU SER ASP LYS GLN SEQRES 11 A 306 LEU ALA GLU ILE SER ALA LEU GLY LEU PRO VAL ILE VAL SEQRES 12 A 306 LYS PRO SER ARG GLU GLY SER SER VAL GLY MET SER LYS SEQRES 13 A 306 VAL VAL ALA GLU ASN ALA LEU GLN ASP ALA LEU ARG LEU SEQRES 14 A 306 ALA PHE GLN HIS ASP GLU GLU VAL LEU ILE GLU LYS TRP SEQRES 15 A 306 LEU SER GLY PRO GLU PHE THR VAL ALA ILE LEU GLY GLU SEQRES 16 A 306 GLU ILE LEU PRO SER ILE ARG ILE GLN PRO SER GLY THR SEQRES 17 A 306 PHE TYR ASP TYR GLU ALA LYS PHE LEU SER ASP GLU THR SEQRES 18 A 306 GLN TYR PHE CYS PRO ALA GLY LEU GLU ALA SER GLN GLU SEQRES 19 A 306 ALA ASN LEU GLN ALA LEU VAL LEU LYS ALA TRP THR THR SEQRES 20 A 306 LEU GLY CYS LYS GLY TRP GLY ARG ILE ASP VAL MET LEU SEQRES 21 A 306 ASP SER ASP GLY GLN PHE TYR LEU LEU GLU ALA ASN THR SEQRES 22 A 306 SER PRO GLY MET THR SER HIS SER LEU VAL PRO MET ALA SEQRES 23 A 306 ALA ARG GLN ALA GLY MET SER PHE SER GLN LEU VAL VAL SEQRES 24 A 306 ARG ILE LEU GLU LEU ALA ASP HET MG A 330 1 HET MG A 331 1 HET ADP A 310 27 HET PHY A 320 16 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PHY 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC HETNAM 2 PHY ACID FORMUL 2 MG 2(MG 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 PHY C6 H15 N O7 P2 FORMUL 6 HOH *250(H2 O) HELIX 1 1 ARG A 16 GLU A 32 1 17 HELIX 2 2 VAL A 47 GLN A 49 5 3 HELIX 3 3 THR A 71 MET A 79 1 9 HELIX 4 4 VAL A 88 MET A 95 1 8 HELIX 5 5 LYS A 97 GLY A 106 1 10 HELIX 6 6 ARG A 119 LYS A 124 1 6 HELIX 7 7 LYS A 129 LEU A 137 1 9 HELIX 8 8 GLU A 160 GLN A 172 5 13 HELIX 9 9 TYR A 212 PHE A 216 1 5 HELIX 10 10 ALA A 231 LEU A 248 1 18 HELIX 11 11 LEU A 282 GLN A 289 1 8 HELIX 12 12 PHE A 294 GLU A 303 1 10 SHEET 1 A 3 ASP A 36 ASP A 41 0 SHEET 2 A 3 LYS A 4 LEU A 9 1 N ILE A 5 O ASP A 36 SHEET 3 A 3 PHE A 55 ILE A 60 1 N GLN A 56 O LYS A 4 SHEET 1 B 4 TRP A 114 THR A 118 0 SHEET 2 B 4 GLU A 176 LYS A 181 -1 N ILE A 179 O VAL A 115 SHEET 3 B 4 VAL A 141 PRO A 145 -1 N LYS A 144 O LEU A 178 SHEET 4 B 4 SER A 155 VAL A 157 -1 N VAL A 157 O VAL A 141 SHEET 1 C 5 PHE A 266 ASN A 272 0 SHEET 2 C 5 TRP A 253 LEU A 260 -1 N MET A 259 O TYR A 267 SHEET 3 C 5 GLU A 187 LEU A 193 -1 N ILE A 192 O GLY A 254 SHEET 4 C 5 ILE A 201 GLN A 204 -1 N ILE A 203 O GLU A 187 SHEET 5 C 5 GLN A 222 PHE A 224 -1 N PHE A 224 O ARG A 202 LINK OD2 ASP A 257 MG MG A 331 1555 1555 2.07 LINK OE2 GLU A 270 MG MG A 330 1555 1555 1.87 LINK OE1 GLU A 270 MG MG A 330 1555 1555 2.55 LINK OE2 GLU A 270 MG MG A 331 1555 1555 2.51 LINK OD1 ASN A 272 MG MG A 330 1555 1555 2.26 LINK O3B ADP A 310 MG MG A 330 1555 1555 2.02 LINK O2B ADP A 310 MG MG A 331 1555 1555 2.24 LINK O2A ADP A 310 MG MG A 331 1555 1555 2.33 LINK O5P PHY A 320 MG MG A 330 1555 1555 2.04 LINK O4P PHY A 320 MG MG A 331 1555 1555 2.03 LINK MG MG A 330 O HOH A 401 1555 1555 2.16 LINK MG MG A 331 O HOH A 407 1555 1555 1.95 CISPEP 1 LEU A 139 PRO A 140 0 -0.48 CISPEP 2 GLY A 185 PRO A 186 0 0.16 CISPEP 3 CYS A 225 PRO A 226 0 0.55 SITE 1 ADP 12 LYS A 97 LYS A 144 LYS A 215 GLU A 270 SITE 2 ADP 12 ASN A 272 SER A 151 GLU A 180 GLU A 187 SITE 3 ADP 12 TRP A 182 ALA A 159 ILE A 142 PHE A 209 SITE 1 LIG 7 GLU A 15 SER A 150 PHE A 216 VAL A 18 SITE 2 LIG 7 HIS A 63 SER A 281 ARG A 255 SITE 1 AC1 6 GLU A 270 ASN A 272 ADP A 310 PHY A 320 SITE 2 AC1 6 MG A 331 HOH A 401 SITE 1 AC2 6 ASP A 257 GLU A 270 ADP A 310 PHY A 320 SITE 2 AC2 6 MG A 330 HOH A 407 SITE 1 AC3 26 LYS A 97 ILE A 142 LYS A 144 GLU A 148 SITE 2 AC3 26 GLY A 149 SER A 150 SER A 151 MET A 154 SITE 3 AC3 26 GLU A 180 LYS A 181 TRP A 182 LEU A 183 SITE 4 AC3 26 GLU A 187 PHE A 209 TYR A 210 LYS A 215 SITE 5 AC3 26 ASP A 257 MET A 259 GLU A 270 PHY A 320 SITE 6 AC3 26 MG A 330 MG A 331 HOH A 401 HOH A 407 SITE 7 AC3 26 HOH A 443 HOH A 449 SITE 1 AC4 17 GLU A 15 SER A 150 LYS A 215 ARG A 255 SITE 2 AC4 17 ASP A 257 GLU A 270 ASN A 272 PRO A 275 SITE 3 AC4 17 GLY A 276 SER A 281 LEU A 282 ADP A 310 SITE 4 AC4 17 MG A 330 MG A 331 HOH A 405 HOH A 407 SITE 5 AC4 17 HOH A 410 CRYST1 99.800 51.700 51.700 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019342 0.00000