HEADER OXIDOREDUCTASE 09-MAY-01 1IPF TITLE TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPINONE REDUCTASE-II; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.236; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DATURA STRAMONIUM; SOURCE 3 ORGANISM_COMMON: JIMSONWEED; SOURCE 4 ORGANISM_TAXID: 4076; SOURCE 5 ORGAN: CULTURED ROOT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21D; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETTR2 KEYWDS OXIDOREDUCTASE, TROPANE ALKALOID BIOSYNTHESIS, REDUCTION OF TROPINONE KEYWDS 2 TO PSEUDOTROPINE, SHORT-CHAIN DEHYDROGENASE, TROPINONE, LAUE KEYWDS 3 DIFFRACTION, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASHITA,M.ENDO,T.HIGASHI,T.NAKATSU,Y.YAMADA,J.ODA,H.KATO,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 25-OCT-23 1IPF 1 REMARK REVDAT 2 24-FEB-09 1IPF 1 VERSN REVDAT 1 03-JUN-03 1IPF 0 JRNL AUTH A.YAMASHITA,M.ENDO,T.HIGASHI,T.NAKATSU,Y.YAMADA,J.ODA,H.KATO JRNL TITL CAPTURING ENZYME STRUCTURE PRIOR TO REACTION INITIATION: JRNL TITL 2 TROPINONE REDUCTASE-II-SUBSTRATE COMPLEXES JRNL REF BIOCHEMISTRY V. 42 5566 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12741812 JRNL DOI 10.1021/BI0272712 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.YAMASHITA,H.KATO,S.WAKATSUKI,T.TOMIZAKI,T.NAKATSU, REMARK 1 AUTH 2 K.NAKAJIMA,T.HASHIMOTO,Y.YAMADA,J.ODA REMARK 1 TITL STRUCTURE OF TROPINONE REDUCTASE-II COMPLEXED WITH NADP+ AND REMARK 1 TITL 2 PSEUDOTROPINE AT 1.9 A RESOLUTION: IMPLICATION FOR REMARK 1 TITL 3 STEREOSPECIFIC SUBSTRATE BINDING AND CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 38 7630 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI9825044 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.NAKAJIMA,A.YAMASHITA,H.AKAMA,T.NAKATSU,H.KATO,T.HASHIMOTO, REMARK 1 AUTH 2 J.ODA,Y.YAMADA REMARK 1 TITL CRYSTAL STRUCTURES OF TWO TROPINONE REDUCTASES: DIFFERENT REMARK 1 TITL 2 REACTION STEREOSPECIFICITIES IN THE SAME PROTEIN FOLD REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 4876 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.95.9.4876 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 23323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2509 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.81 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.685 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : UNRESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NPH.PARAM REMARK 3 PARAMETER FILE 3 : TPO.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NPH.TOP REMARK 3 TOPOLOGY FILE 4 : TPO.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HOH 61, WHICH IS LISTED IN REMARK 525, MAKES A 3.55 A HYDROGEN REMARK 3 BOND WITH HOH 11, REMARK 3 WHICH MAKES A HYDROGEN BOND WITH PROTEIN MOLECULE AT 2.91 A REMARK 3 DISTANCE. REMARK 4 REMARK 4 1IPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000005148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 288.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 0.7-1.65 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : LAUENORM, INTLAUE REMARK 200 DATA SCALING SOFTWARE : LAUENORM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 6.340 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 2AE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, DITHIOTHREITOL, REMARK 280 HEPES, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 224.80000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 168.60000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 281.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.20000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 224.80000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 281.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 168.60000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 44.30000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 76.72985 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 281.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 44.30000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 76.72985 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 281.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 295 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 137 -5.92 83.65 REMARK 500 SER A 145 -140.06 -89.58 REMARK 500 ASN A 181 39.88 70.54 REMARK 500 ARG A 220 51.01 29.21 REMARK 500 CYS A 258 -60.35 -155.13 REMARK 500 GLU B 8 109.02 -54.31 REMARK 500 ARG B 138 66.80 -164.24 REMARK 500 SER B 145 -137.03 -88.51 REMARK 500 ALA B 193 95.27 -68.03 REMARK 500 ILE B 201 1.96 -61.99 REMARK 500 PRO B 225 -33.43 -34.00 REMARK 500 CYS B 258 -57.41 -149.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TNE A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TNE B 1262 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IPE RELATED DB: PDB REMARK 900 1IPE CONTAINS THE SAME PROTEIN COMPLEXED WITH NADPH REMARK 900 RELATED ID: MY_001000042.2 RELATED DB: TARGETDB DBREF 1IPF A 2 260 UNP P50163 TRN2_DATST 2 260 DBREF 1IPF B 2 260 UNP P50163 TRN2_DATST 2 260 SEQRES 1 A 259 ALA GLY ARG TRP ASN LEU GLU GLY CYS THR ALA LEU VAL SEQRES 2 A 259 THR GLY GLY SER ARG GLY ILE GLY TYR GLY ILE VAL GLU SEQRES 3 A 259 GLU LEU ALA SER LEU GLY ALA SER VAL TYR THR CYS SER SEQRES 4 A 259 ARG ASN GLN LYS GLU LEU ASN ASP CYS LEU THR GLN TRP SEQRES 5 A 259 ARG SER LYS GLY PHE LYS VAL GLU ALA SER VAL CYS ASP SEQRES 6 A 259 LEU SER SER ARG SER GLU ARG GLN GLU LEU MET ASN THR SEQRES 7 A 259 VAL ALA ASN HIS PHE HIS GLY LYS LEU ASN ILE LEU VAL SEQRES 8 A 259 ASN ASN ALA GLY ILE VAL ILE TYR LYS GLU ALA LYS ASP SEQRES 9 A 259 TYR THR VAL GLU ASP TYR SER LEU ILE MET SER ILE ASN SEQRES 10 A 259 PHE GLU ALA ALA TYR HIS LEU SER VAL LEU ALA HIS PRO SEQRES 11 A 259 PHE LEU LYS ALA SER GLU ARG GLY ASN VAL VAL PHE ILE SEQRES 12 A 259 SER SER VAL SER GLY ALA LEU ALA VAL PRO TYR GLU ALA SEQRES 13 A 259 VAL TYR GLY ALA THR LYS GLY ALA MET ASP GLN LEU THR SEQRES 14 A 259 ARG CYS LEU ALA PHE GLU TRP ALA LYS ASP ASN ILE ARG SEQRES 15 A 259 VAL ASN GLY VAL GLY PRO GLY VAL ILE ALA THR SER LEU SEQRES 16 A 259 VAL GLU MET THR ILE GLN ASP PRO GLU GLN LYS GLU ASN SEQRES 17 A 259 LEU ASN LYS LEU ILE ASP ARG CYS ALA LEU ARG ARG MET SEQRES 18 A 259 GLY GLU PRO LYS GLU LEU ALA ALA MET VAL ALA PHE LEU SEQRES 19 A 259 CYS PHE PRO ALA ALA SER TYR VAL THR GLY GLN ILE ILE SEQRES 20 A 259 TYR VAL ASP GLY GLY LEU MET ALA ASN CYS GLY PHE SEQRES 1 B 259 ALA GLY ARG TRP ASN LEU GLU GLY CYS THR ALA LEU VAL SEQRES 2 B 259 THR GLY GLY SER ARG GLY ILE GLY TYR GLY ILE VAL GLU SEQRES 3 B 259 GLU LEU ALA SER LEU GLY ALA SER VAL TYR THR CYS SER SEQRES 4 B 259 ARG ASN GLN LYS GLU LEU ASN ASP CYS LEU THR GLN TRP SEQRES 5 B 259 ARG SER LYS GLY PHE LYS VAL GLU ALA SER VAL CYS ASP SEQRES 6 B 259 LEU SER SER ARG SER GLU ARG GLN GLU LEU MET ASN THR SEQRES 7 B 259 VAL ALA ASN HIS PHE HIS GLY LYS LEU ASN ILE LEU VAL SEQRES 8 B 259 ASN ASN ALA GLY ILE VAL ILE TYR LYS GLU ALA LYS ASP SEQRES 9 B 259 TYR THR VAL GLU ASP TYR SER LEU ILE MET SER ILE ASN SEQRES 10 B 259 PHE GLU ALA ALA TYR HIS LEU SER VAL LEU ALA HIS PRO SEQRES 11 B 259 PHE LEU LYS ALA SER GLU ARG GLY ASN VAL VAL PHE ILE SEQRES 12 B 259 SER SER VAL SER GLY ALA LEU ALA VAL PRO TYR GLU ALA SEQRES 13 B 259 VAL TYR GLY ALA THR LYS GLY ALA MET ASP GLN LEU THR SEQRES 14 B 259 ARG CYS LEU ALA PHE GLU TRP ALA LYS ASP ASN ILE ARG SEQRES 15 B 259 VAL ASN GLY VAL GLY PRO GLY VAL ILE ALA THR SER LEU SEQRES 16 B 259 VAL GLU MET THR ILE GLN ASP PRO GLU GLN LYS GLU ASN SEQRES 17 B 259 LEU ASN LYS LEU ILE ASP ARG CYS ALA LEU ARG ARG MET SEQRES 18 B 259 GLY GLU PRO LYS GLU LEU ALA ALA MET VAL ALA PHE LEU SEQRES 19 B 259 CYS PHE PRO ALA ALA SER TYR VAL THR GLY GLN ILE ILE SEQRES 20 B 259 TYR VAL ASP GLY GLY LEU MET ALA ASN CYS GLY PHE HET NDP A 261 48 HET TNE A 262 10 HET NDP B1261 48 HET TNE B1262 10 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM TNE 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE HETSYN TNE TROPINONE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 TNE 2(C8 H13 N O) FORMUL 7 HOH *62(H2 O) HELIX 1 BA GLY A 20 SER A 31 1 12 HELIX 2 CA GLN A 43 SER A 55 1 13 HELIX 3 DA ARG A 70 HIS A 83 1 14 HELIX 4 T0A ALA A 103 ASP A 105 5 3 HELIX 5 E1A VAL A 108 ASN A 118 1 11 HELIX 6 E2A GLU A 120 ALA A 135 1 16 HELIX 7 T1A VAL A 147 GLY A 149 5 3 HELIX 8 F1A ALA A 157 GLU A 176 1 20 HELIX 9 F2A ALA A 178 ASP A 180 5 3 HELIX 10 GDA SER A 195 THR A 200 1 6 HELIX 11 GPA PRO A 204 ASP A 215 1 12 HELIX 12 GA PRO A 225 CYS A 236 1 12 HELIX 13 T2A PRO A 238 ALA A 240 5 3 HELIX 14 T3A LEU A 254 ALA A 256 5 3 HELIX 15 BB GLY B 20 SER B 31 1 12 HELIX 16 CB GLN B 43 SER B 55 1 13 HELIX 17 DB ARG B 70 HIS B 83 1 14 HELIX 18 T0B ALA B 103 ASP B 105 5 3 HELIX 19 E1B VAL B 108 ASN B 118 1 11 HELIX 20 E2B GLU B 120 ALA B 135 1 16 HELIX 21 T1B VAL B 147 GLY B 149 5 3 HELIX 22 F1B ALA B 157 GLU B 176 1 20 HELIX 23 F2B ALA B 178 ASP B 180 5 3 HELIX 24 GDB SER B 195 THR B 200 1 6 HELIX 25 GPB PRO B 204 ASP B 215 1 12 HELIX 26 GB PRO B 225 CYS B 236 1 12 HELIX 27 T2B PRO B 238 ALA B 240 5 3 HELIX 28 T3B LEU B 254 ALA B 256 5 3 SHEET 1 S1A 7 LYS A 59 VAL A 64 0 SHEET 2 S1A 7 SER A 35 SER A 40 1 N THR A 38 O GLU A 61 SHEET 3 S1A 7 THR A 11 THR A 15 1 N VAL A 14 O TYR A 37 SHEET 4 S1A 7 ILE A 90 ASN A 93 1 N VAL A 92 O LEU A 13 SHEET 5 S1A 7 GLY A 139 ILE A 144 1 N VAL A 142 O LEU A 91 SHEET 6 S1A 7 ILE A 182 PRO A 189 1 N ASN A 185 O VAL A 141 SHEET 7 S1A 7 ILE A 247 VAL A 250 1 N ILE A 248 O GLY A 186 SHEET 1 S1B 7 LYS B 59 VAL B 64 0 SHEET 2 S1B 7 SER B 35 SER B 40 1 N THR B 38 O GLU B 61 SHEET 3 S1B 7 THR B 11 THR B 15 1 N VAL B 14 O TYR B 37 SHEET 4 S1B 7 ILE B 90 ASN B 93 1 N VAL B 92 O LEU B 13 SHEET 5 S1B 7 GLY B 139 ILE B 144 1 N VAL B 142 O LEU B 91 SHEET 6 S1B 7 ILE B 182 PRO B 189 1 N ASN B 185 O VAL B 141 SHEET 7 S1B 7 ILE B 247 VAL B 250 1 N ILE B 248 O GLY B 186 SITE 1 AC1 26 GLY A 16 SER A 18 ARG A 19 GLY A 20 SITE 2 AC1 26 ILE A 21 SER A 40 ARG A 41 CYS A 65 SITE 3 AC1 26 ASP A 66 LEU A 67 ASN A 94 ALA A 95 SITE 4 AC1 26 ILE A 144 SER A 145 SER A 146 TYR A 159 SITE 5 AC1 26 LYS A 163 GLY A 190 VAL A 191 ILE A 192 SITE 6 AC1 26 THR A 194 SER A 195 LEU A 196 VAL A 197 SITE 7 AC1 26 TNE A 262 HOH A 293 SITE 1 AC2 9 TYR A 100 SER A 146 SER A 148 GLU A 156 SITE 2 AC2 9 TYR A 159 GLY A 190 LEU A 210 LEU A 213 SITE 3 AC2 9 NDP A 261 SITE 1 AC3 28 GLY B 16 SER B 18 ARG B 19 ILE B 21 SITE 2 AC3 28 SER B 40 ARG B 41 GLU B 45 CYS B 65 SITE 3 AC3 28 ASP B 66 LEU B 67 ASN B 94 GLY B 96 SITE 4 AC3 28 ILE B 117 ILE B 144 SER B 145 SER B 146 SITE 5 AC3 28 TYR B 159 LYS B 163 PRO B 189 GLY B 190 SITE 6 AC3 28 VAL B 191 ILE B 192 THR B 194 SER B 195 SITE 7 AC3 28 LEU B 196 VAL B 197 TNE B1262 HOH B1284 SITE 1 AC4 7 TYR B 100 SER B 146 GLU B 156 TYR B 159 SITE 2 AC4 7 VAL B 191 VAL B 197 NDP B1261 CRYST1 88.600 88.600 337.200 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011290 0.006520 0.000000 0.00000 SCALE2 0.000000 0.013030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002970 0.00000