HEADER SIGNALING PROTEIN 14-MAY-01 1IPG TITLE SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEM1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB1 DOMAIN(RESIDUES 472-551); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS UBIQUITIN ALPHA/BETA ROLL, SIGNALING PROTEIN EXPDTA SOLUTION NMR AUTHOR H.TERASAWA,Y.NODA,T.ITO,H.HATANAKA,S.ICHIKAWA,K.OGURA,H.SUMIMOTO, AUTHOR 2 F.INAGAKI REVDAT 5 27-DEC-23 1IPG 1 REMARK REVDAT 4 23-FEB-22 1IPG 1 REMARK SEQADV REVDAT 3 24-FEB-09 1IPG 1 VERSN REVDAT 2 14-JAN-03 1IPG 1 REMARK REVDAT 1 15-AUG-01 1IPG 0 JRNL AUTH H.TERASAWA,Y.NODA,T.ITO,H.HATANAKA,S.ICHIKAWA,K.OGURA, JRNL AUTH 2 H.SUMIMOTO,F.INAGAKI JRNL TITL STRUCTURE AND LIGAND RECOGNITION OF THE PB1 DOMAIN: A NOVEL JRNL TITL 2 PROTEIN MODULE BINDING TO THE PC MOTIF. JRNL REF EMBO J. V. 20 3947 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11483498 JRNL DOI 10.1093/EMBOJ/20.15.3947 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.ITO,Y.MATSUI,T.AGO,K.OTA,H.SUMIMOTO REMARK 1 TITL NOVEL MODULAR DOMAIN PB1 RECOGNIZES PC MOTIF TO MEDIATE REMARK 1 TITL 2 FUNCTIONAL PROTEIN-PROTEIN INTERACTIONS REMARK 1 REF EMBO J. V. 20 3938 2001 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/20.15.3938 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1334 RESTRAINTS, 1269 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 65 REMARK 3 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1IPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000005149. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 50MM POTASSIUM PHOSPHATE; 150MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM BEM PB1 U-15N, 13C; 50MM REMARK 210 POTASSIUM PHOSPHATE PH 6.3; REMARK 210 150MM SODIUM CHLORIDE; 1MM REMARK 210 SODIUM AZIDE; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA; HNHB; REMARK 210 HN(CO)HB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 104.84 58.10 REMARK 500 MET A 3 61.68 -157.75 REMARK 500 SER A 5 -58.49 -175.64 REMARK 500 SER A 6 76.36 44.03 REMARK 500 THR A 7 72.42 54.42 REMARK 500 LEU A 10 -146.15 35.09 REMARK 500 LYS A 20 -135.74 52.86 REMARK 500 ASP A 46 8.33 91.71 REMARK 500 LYS A 55 106.52 -35.25 REMARK 500 LEU A 56 -85.15 -92.99 REMARK 500 PHE A 57 -37.94 -160.46 REMARK 500 LYS A 65 13.65 -148.47 REMARK 500 LYS A 77 81.51 45.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 38 0.25 SIDE CHAIN REMARK 500 ARG A 44 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IP9 RELATED DB: PDB REMARK 900 1IP9 IS THE ENSEMBLES OF 20 STRUCTURES. DBREF 1IPG A 6 85 UNP P29366 BEM1_YEAST 472 551 SEQADV 1IPG GLY A 1 UNP P29366 CLONING ARTIFACT SEQADV 1IPG ALA A 2 UNP P29366 CLONING ARTIFACT SEQADV 1IPG MET A 3 UNP P29366 CLONING ARTIFACT SEQADV 1IPG GLY A 4 UNP P29366 CLONING ARTIFACT SEQADV 1IPG SER A 5 UNP P29366 CLONING ARTIFACT SEQRES 1 A 85 GLY ALA MET GLY SER SER THR SER GLY LEU LYS THR THR SEQRES 2 A 85 LYS ILE LYS PHE TYR TYR LYS ASP ASP ILE PHE ALA LEU SEQRES 3 A 85 MET LEU LYS GLY ASP THR THR TYR LYS GLU LEU ARG SER SEQRES 4 A 85 LYS ILE ALA PRO ARG ILE ASP THR ASP ASN PHE LYS LEU SEQRES 5 A 85 GLN THR LYS LEU PHE ASP GLY SER GLY GLU GLU ILE LYS SEQRES 6 A 85 THR ASP SER GLN VAL SER ASN ILE ILE GLN ALA LYS LEU SEQRES 7 A 85 LYS ILE SER VAL HIS ASP ILE HELIX 1 1 THR A 33 ASP A 46 1 14 HELIX 2 2 THR A 66 ALA A 76 1 11 SHEET 1 A 4 PHE A 24 LEU A 28 0 SHEET 2 A 4 THR A 13 TYR A 19 -1 N THR A 13 O LEU A 28 SHEET 3 A 4 ILE A 80 ASP A 84 1 N ILE A 80 O LYS A 16 SHEET 4 A 4 PHE A 50 THR A 54 -1 O LYS A 51 N HIS A 83 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000