HEADER SUGAR BINDING PROTEIN 16-MAY-01 1IPK TITLE CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ TITLE 2 BETA HOMOTRIMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-CONGLYCININ, BETA CHAIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SOYBEAN, STORAGE PROTEIN, VICILIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.MARUYAMA,M.ADACHI,K.TAKAHASHI,K.YAGASAKI,M.KOHNO,Y.TAKENAKA, AUTHOR 2 E.OKUDA,S.NAKAGAWA,B.MIKAMI,S.UTSUMI REVDAT 5 27-DEC-23 1IPK 1 SEQADV REVDAT 4 04-OCT-17 1IPK 1 REMARK REVDAT 3 24-FEB-09 1IPK 1 VERSN REVDAT 2 14-JAN-03 1IPK 1 REMARK REVDAT 1 16-MAY-02 1IPK 0 JRNL AUTH N.MARUYAMA,M.ADACHI,K.TAKAHASHI,K.YAGASAKI,M.KOHNO, JRNL AUTH 2 Y.TAKENAKA,E.OKUDA,S.NAKAGAWA,B.MIKAMI,S.UTSUMI JRNL TITL CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN JRNL TITL 2 BETA-CONGLYCININ BETA HOMOTRIMERS. JRNL REF EUR.J.BIOCHEM. V. 268 3595 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11422391 JRNL DOI 10.1046/J.1432-1327.2001.02268.X REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000005152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.080 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG10000, MES, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.74000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 175 REMARK 465 GLU A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLN A 180 REMARK 465 ARG A 181 REMARK 465 GLN A 182 REMARK 465 GLN A 292 REMARK 465 GLN A 293 REMARK 465 LYS A 294 REMARK 465 GLN A 295 REMARK 465 LYS A 296 REMARK 465 GLN A 297 REMARK 465 GLU A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLN A 393 REMARK 465 PRO A 394 REMARK 465 GLN A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 GLU A 398 REMARK 465 GLU A 399 REMARK 465 GLY A 400 REMARK 465 SER A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 GLY A 406 REMARK 465 PRO A 407 REMARK 465 PHE A 408 REMARK 465 PRO A 409 REMARK 465 SER A 410 REMARK 465 ILE A 411 REMARK 465 LEU A 412 REMARK 465 GLY A 413 REMARK 465 ALA A 414 REMARK 465 LEU A 415 REMARK 465 TYR A 416 REMARK 465 LEU B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 175 REMARK 465 GLU B 176 REMARK 465 GLU B 177 REMARK 465 GLU B 178 REMARK 465 GLU B 179 REMARK 465 GLN B 180 REMARK 465 ARG B 181 REMARK 465 GLN B 182 REMARK 465 GLN B 291 REMARK 465 GLN B 292 REMARK 465 GLN B 293 REMARK 465 LYS B 294 REMARK 465 GLN B 295 REMARK 465 LYS B 296 REMARK 465 GLN B 297 REMARK 465 GLU B 298 REMARK 465 GLU B 299 REMARK 465 GLU B 300 REMARK 465 PRO B 301 REMARK 465 GLN B 393 REMARK 465 PRO B 394 REMARK 465 GLN B 395 REMARK 465 GLN B 396 REMARK 465 LYS B 397 REMARK 465 GLU B 398 REMARK 465 GLU B 399 REMARK 465 GLY B 400 REMARK 465 SER B 401 REMARK 465 LYS B 402 REMARK 465 GLY B 403 REMARK 465 ARG B 404 REMARK 465 LYS B 405 REMARK 465 GLY B 406 REMARK 465 PRO B 407 REMARK 465 PHE B 408 REMARK 465 PRO B 409 REMARK 465 SER B 410 REMARK 465 ILE B 411 REMARK 465 LEU B 412 REMARK 465 GLY B 413 REMARK 465 ALA B 414 REMARK 465 LEU B 415 REMARK 465 TYR B 416 REMARK 465 LEU C 1 REMARK 465 LYS C 2 REMARK 465 GLU C 290 REMARK 465 GLN C 291 REMARK 465 GLN C 292 REMARK 465 GLN C 293 REMARK 465 LYS C 294 REMARK 465 GLN C 295 REMARK 465 LYS C 296 REMARK 465 GLN C 297 REMARK 465 GLU C 298 REMARK 465 GLU C 299 REMARK 465 GLU C 300 REMARK 465 GLN C 393 REMARK 465 PRO C 394 REMARK 465 GLN C 395 REMARK 465 GLN C 396 REMARK 465 LYS C 397 REMARK 465 GLU C 398 REMARK 465 GLU C 399 REMARK 465 GLY C 400 REMARK 465 SER C 401 REMARK 465 LYS C 402 REMARK 465 GLY C 403 REMARK 465 ARG C 404 REMARK 465 LYS C 405 REMARK 465 GLY C 406 REMARK 465 PRO C 407 REMARK 465 PHE C 408 REMARK 465 PRO C 409 REMARK 465 SER C 410 REMARK 465 ILE C 411 REMARK 465 LEU C 412 REMARK 465 GLY C 413 REMARK 465 ALA C 414 REMARK 465 LEU C 415 REMARK 465 TYR C 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 200 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG C 201 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 136.13 178.39 REMARK 500 ARG A 29 129.02 -178.92 REMARK 500 GLN A 42 -20.57 -37.04 REMARK 500 PRO A 64 134.48 -39.28 REMARK 500 ASP A 88 22.66 -140.08 REMARK 500 HIS A 117 -9.98 -140.89 REMARK 500 ASN A 130 -60.56 -108.08 REMARK 500 SER A 141 -177.71 -51.80 REMARK 500 GLN A 144 29.45 -78.85 REMARK 500 SER A 148 133.18 -33.29 REMARK 500 PHE A 153 -170.50 -64.77 REMARK 500 HIS A 163 51.44 75.63 REMARK 500 PHE A 166 -70.53 -8.65 REMARK 500 GLU A 167 5.81 -51.95 REMARK 500 LYS A 192 -29.96 -36.63 REMARK 500 GLN A 197 -73.93 -71.18 REMARK 500 SER A 199 -12.09 -161.25 REMARK 500 SER A 206 -150.69 -74.73 REMARK 500 ASP A 214 -37.97 -151.32 REMARK 500 LEU A 219 -73.69 -58.85 REMARK 500 ARG A 220 18.99 -66.97 REMARK 500 SER A 227 128.68 -175.32 REMARK 500 ASN A 229 -42.18 -15.07 REMARK 500 LEU A 263 136.31 -37.46 REMARK 500 LYS A 269 -5.44 -146.33 REMARK 500 ALA A 281 136.65 176.92 REMARK 500 ASP A 314 -3.26 91.15 REMARK 500 PRO A 320 171.07 -44.33 REMARK 500 ALA A 322 25.11 85.66 REMARK 500 SER A 331 139.28 170.49 REMARK 500 ASN A 332 107.77 -24.96 REMARK 500 ASN A 334 105.46 -162.65 REMARK 500 PRO A 371 35.52 -59.68 REMARK 500 ALA A 374 16.33 -61.62 REMARK 500 TYR A 388 -57.74 43.51 REMARK 500 SER B 15 -8.65 -51.60 REMARK 500 GLU B 24 111.92 -169.54 REMARK 500 GLN B 26 3.06 -45.98 REMARK 500 GLN B 34 177.48 -51.23 REMARK 500 LEU B 43 56.93 -106.60 REMARK 500 LYS B 57 173.36 -51.64 REMARK 500 ASN B 59 66.40 66.01 REMARK 500 ALA B 80 161.17 178.70 REMARK 500 ASP B 89 -144.00 -153.56 REMARK 500 ARG B 90 143.28 177.93 REMARK 500 PRO B 104 167.64 -46.35 REMARK 500 PRO B 114 47.91 -82.18 REMARK 500 ASN B 130 -62.09 -100.54 REMARK 500 SER B 141 163.80 -49.70 REMARK 500 HIS B 163 84.49 54.41 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IPJ RELATED DB: PDB REMARK 900 1IPJ CONTAINS THE SAME PROTEIN COMPLEXED WITH N-ACETYL-D-GLUCOSAMINE DBREF 1IPK A 1 416 UNP P25974 GLCB_SOYBN 24 439 DBREF 1IPK B 1 416 UNP P25974 GLCB_SOYBN 24 439 DBREF 1IPK C 1 416 UNP P25974 GLCB_SOYBN 24 439 SEQADV 1IPK GLY A 28 UNP P25974 VAL 51 CONFLICT SEQADV 1IPK GLY B 28 UNP P25974 VAL 51 CONFLICT SEQADV 1IPK GLY C 28 UNP P25974 VAL 51 CONFLICT SEQRES 1 A 416 LEU LYS VAL ARG GLU ASP GLU ASN ASN PRO PHE TYR PHE SEQRES 2 A 416 ARG SER SER ASN SER PHE GLN THR LEU PHE GLU ASN GLN SEQRES 3 A 416 ASN GLY ARG ILE ARG LEU LEU GLN ARG PHE ASN LYS ARG SEQRES 4 A 416 SER PRO GLN LEU GLU ASN LEU ARG ASP TYR ARG ILE VAL SEQRES 5 A 416 GLN PHE GLN SER LYS PRO ASN THR ILE LEU LEU PRO HIS SEQRES 6 A 416 HIS ALA ASP ALA ASP PHE LEU LEU PHE VAL LEU SER GLY SEQRES 7 A 416 ARG ALA ILE LEU THR LEU VAL ASN ASN ASP ASP ARG ASP SEQRES 8 A 416 SER TYR ASN LEU HIS PRO GLY ASP ALA GLN ARG ILE PRO SEQRES 9 A 416 ALA GLY THR THR TYR TYR LEU VAL ASN PRO HIS ASP HIS SEQRES 10 A 416 GLN ASN LEU LYS ILE ILE LYS LEU ALA ILE PRO VAL ASN SEQRES 11 A 416 LYS PRO GLY ARG TYR ASP ASP PHE PHE LEU SER SER THR SEQRES 12 A 416 GLN ALA GLN GLN SER TYR LEU GLN GLY PHE SER HIS ASN SEQRES 13 A 416 ILE LEU GLU THR SER PHE HIS SER GLU PHE GLU GLU ILE SEQRES 14 A 416 ASN ARG VAL LEU PHE GLY GLU GLU GLU GLU GLN ARG GLN SEQRES 15 A 416 GLN GLU GLY VAL ILE VAL GLU LEU SER LYS GLU GLN ILE SEQRES 16 A 416 ARG GLN LEU SER ARG ARG ALA LYS SER SER SER ARG LYS SEQRES 17 A 416 THR ILE SER SER GLU ASP GLU PRO PHE ASN LEU ARG SER SEQRES 18 A 416 ARG ASN PRO ILE TYR SER ASN ASN PHE GLY LYS PHE PHE SEQRES 19 A 416 GLU ILE THR PRO GLU LYS ASN PRO GLN LEU ARG ASP LEU SEQRES 20 A 416 ASP ILE PHE LEU SER SER VAL ASP ILE ASN GLU GLY ALA SEQRES 21 A 416 LEU LEU LEU PRO HIS PHE ASN SER LYS ALA ILE VAL ILE SEQRES 22 A 416 LEU VAL ILE ASN GLU GLY ASP ALA ASN ILE GLU LEU VAL SEQRES 23 A 416 GLY ILE LYS GLU GLN GLN GLN LYS GLN LYS GLN GLU GLU SEQRES 24 A 416 GLU PRO LEU GLU VAL GLN ARG TYR ARG ALA GLU LEU SER SEQRES 25 A 416 GLU ASP ASP VAL PHE VAL ILE PRO ALA ALA TYR PRO PHE SEQRES 26 A 416 VAL VAL ASN ALA THR SER ASN LEU ASN PHE LEU ALA PHE SEQRES 27 A 416 GLY ILE ASN ALA GLU ASN ASN GLN ARG ASN PHE LEU ALA SEQRES 28 A 416 GLY GLU LYS ASP ASN VAL VAL ARG GLN ILE GLU ARG GLN SEQRES 29 A 416 VAL GLN GLU LEU ALA PHE PRO GLY SER ALA GLN ASP VAL SEQRES 30 A 416 GLU ARG LEU LEU LYS LYS GLN ARG GLU SER TYR PHE VAL SEQRES 31 A 416 ASP ALA GLN PRO GLN GLN LYS GLU GLU GLY SER LYS GLY SEQRES 32 A 416 ARG LYS GLY PRO PHE PRO SER ILE LEU GLY ALA LEU TYR SEQRES 1 B 416 LEU LYS VAL ARG GLU ASP GLU ASN ASN PRO PHE TYR PHE SEQRES 2 B 416 ARG SER SER ASN SER PHE GLN THR LEU PHE GLU ASN GLN SEQRES 3 B 416 ASN GLY ARG ILE ARG LEU LEU GLN ARG PHE ASN LYS ARG SEQRES 4 B 416 SER PRO GLN LEU GLU ASN LEU ARG ASP TYR ARG ILE VAL SEQRES 5 B 416 GLN PHE GLN SER LYS PRO ASN THR ILE LEU LEU PRO HIS SEQRES 6 B 416 HIS ALA ASP ALA ASP PHE LEU LEU PHE VAL LEU SER GLY SEQRES 7 B 416 ARG ALA ILE LEU THR LEU VAL ASN ASN ASP ASP ARG ASP SEQRES 8 B 416 SER TYR ASN LEU HIS PRO GLY ASP ALA GLN ARG ILE PRO SEQRES 9 B 416 ALA GLY THR THR TYR TYR LEU VAL ASN PRO HIS ASP HIS SEQRES 10 B 416 GLN ASN LEU LYS ILE ILE LYS LEU ALA ILE PRO VAL ASN SEQRES 11 B 416 LYS PRO GLY ARG TYR ASP ASP PHE PHE LEU SER SER THR SEQRES 12 B 416 GLN ALA GLN GLN SER TYR LEU GLN GLY PHE SER HIS ASN SEQRES 13 B 416 ILE LEU GLU THR SER PHE HIS SER GLU PHE GLU GLU ILE SEQRES 14 B 416 ASN ARG VAL LEU PHE GLY GLU GLU GLU GLU GLN ARG GLN SEQRES 15 B 416 GLN GLU GLY VAL ILE VAL GLU LEU SER LYS GLU GLN ILE SEQRES 16 B 416 ARG GLN LEU SER ARG ARG ALA LYS SER SER SER ARG LYS SEQRES 17 B 416 THR ILE SER SER GLU ASP GLU PRO PHE ASN LEU ARG SER SEQRES 18 B 416 ARG ASN PRO ILE TYR SER ASN ASN PHE GLY LYS PHE PHE SEQRES 19 B 416 GLU ILE THR PRO GLU LYS ASN PRO GLN LEU ARG ASP LEU SEQRES 20 B 416 ASP ILE PHE LEU SER SER VAL ASP ILE ASN GLU GLY ALA SEQRES 21 B 416 LEU LEU LEU PRO HIS PHE ASN SER LYS ALA ILE VAL ILE SEQRES 22 B 416 LEU VAL ILE ASN GLU GLY ASP ALA ASN ILE GLU LEU VAL SEQRES 23 B 416 GLY ILE LYS GLU GLN GLN GLN LYS GLN LYS GLN GLU GLU SEQRES 24 B 416 GLU PRO LEU GLU VAL GLN ARG TYR ARG ALA GLU LEU SER SEQRES 25 B 416 GLU ASP ASP VAL PHE VAL ILE PRO ALA ALA TYR PRO PHE SEQRES 26 B 416 VAL VAL ASN ALA THR SER ASN LEU ASN PHE LEU ALA PHE SEQRES 27 B 416 GLY ILE ASN ALA GLU ASN ASN GLN ARG ASN PHE LEU ALA SEQRES 28 B 416 GLY GLU LYS ASP ASN VAL VAL ARG GLN ILE GLU ARG GLN SEQRES 29 B 416 VAL GLN GLU LEU ALA PHE PRO GLY SER ALA GLN ASP VAL SEQRES 30 B 416 GLU ARG LEU LEU LYS LYS GLN ARG GLU SER TYR PHE VAL SEQRES 31 B 416 ASP ALA GLN PRO GLN GLN LYS GLU GLU GLY SER LYS GLY SEQRES 32 B 416 ARG LYS GLY PRO PHE PRO SER ILE LEU GLY ALA LEU TYR SEQRES 1 C 416 LEU LYS VAL ARG GLU ASP GLU ASN ASN PRO PHE TYR PHE SEQRES 2 C 416 ARG SER SER ASN SER PHE GLN THR LEU PHE GLU ASN GLN SEQRES 3 C 416 ASN GLY ARG ILE ARG LEU LEU GLN ARG PHE ASN LYS ARG SEQRES 4 C 416 SER PRO GLN LEU GLU ASN LEU ARG ASP TYR ARG ILE VAL SEQRES 5 C 416 GLN PHE GLN SER LYS PRO ASN THR ILE LEU LEU PRO HIS SEQRES 6 C 416 HIS ALA ASP ALA ASP PHE LEU LEU PHE VAL LEU SER GLY SEQRES 7 C 416 ARG ALA ILE LEU THR LEU VAL ASN ASN ASP ASP ARG ASP SEQRES 8 C 416 SER TYR ASN LEU HIS PRO GLY ASP ALA GLN ARG ILE PRO SEQRES 9 C 416 ALA GLY THR THR TYR TYR LEU VAL ASN PRO HIS ASP HIS SEQRES 10 C 416 GLN ASN LEU LYS ILE ILE LYS LEU ALA ILE PRO VAL ASN SEQRES 11 C 416 LYS PRO GLY ARG TYR ASP ASP PHE PHE LEU SER SER THR SEQRES 12 C 416 GLN ALA GLN GLN SER TYR LEU GLN GLY PHE SER HIS ASN SEQRES 13 C 416 ILE LEU GLU THR SER PHE HIS SER GLU PHE GLU GLU ILE SEQRES 14 C 416 ASN ARG VAL LEU PHE GLY GLU GLU GLU GLU GLN ARG GLN SEQRES 15 C 416 GLN GLU GLY VAL ILE VAL GLU LEU SER LYS GLU GLN ILE SEQRES 16 C 416 ARG GLN LEU SER ARG ARG ALA LYS SER SER SER ARG LYS SEQRES 17 C 416 THR ILE SER SER GLU ASP GLU PRO PHE ASN LEU ARG SER SEQRES 18 C 416 ARG ASN PRO ILE TYR SER ASN ASN PHE GLY LYS PHE PHE SEQRES 19 C 416 GLU ILE THR PRO GLU LYS ASN PRO GLN LEU ARG ASP LEU SEQRES 20 C 416 ASP ILE PHE LEU SER SER VAL ASP ILE ASN GLU GLY ALA SEQRES 21 C 416 LEU LEU LEU PRO HIS PHE ASN SER LYS ALA ILE VAL ILE SEQRES 22 C 416 LEU VAL ILE ASN GLU GLY ASP ALA ASN ILE GLU LEU VAL SEQRES 23 C 416 GLY ILE LYS GLU GLN GLN GLN LYS GLN LYS GLN GLU GLU SEQRES 24 C 416 GLU PRO LEU GLU VAL GLN ARG TYR ARG ALA GLU LEU SER SEQRES 25 C 416 GLU ASP ASP VAL PHE VAL ILE PRO ALA ALA TYR PRO PHE SEQRES 26 C 416 VAL VAL ASN ALA THR SER ASN LEU ASN PHE LEU ALA PHE SEQRES 27 C 416 GLY ILE ASN ALA GLU ASN ASN GLN ARG ASN PHE LEU ALA SEQRES 28 C 416 GLY GLU LYS ASP ASN VAL VAL ARG GLN ILE GLU ARG GLN SEQRES 29 C 416 VAL GLN GLU LEU ALA PHE PRO GLY SER ALA GLN ASP VAL SEQRES 30 C 416 GLU ARG LEU LEU LYS LYS GLN ARG GLU SER TYR PHE VAL SEQRES 31 C 416 ASP ALA GLN PRO GLN GLN LYS GLU GLU GLY SER LYS GLY SEQRES 32 C 416 ARG LYS GLY PRO PHE PRO SER ILE LEU GLY ALA LEU TYR HELIX 1 1 ARG A 14 SER A 18 1 5 HELIX 2 2 ARG A 35 SER A 40 1 6 HELIX 3 3 SER A 154 HIS A 163 1 10 HELIX 4 4 GLU A 168 LEU A 173 1 6 HELIX 5 5 SER A 191 LEU A 198 1 8 HELIX 6 6 LYS A 208 SER A 212 5 5 HELIX 7 7 ARG A 220 ARG A 222 5 3 HELIX 8 8 ASN A 241 ASP A 246 1 6 HELIX 9 9 GLU A 362 GLU A 367 1 6 HELIX 10 10 VAL A 377 LYS A 382 1 6 HELIX 11 11 ARG B 35 SER B 40 1 6 HELIX 12 12 PRO B 41 ARG B 47 5 7 HELIX 13 13 TYR B 149 PHE B 153 5 5 HELIX 14 14 SER B 154 HIS B 163 1 10 HELIX 15 15 GLU B 165 LEU B 173 1 9 HELIX 16 16 SER B 191 LEU B 198 1 8 HELIX 17 17 ASN B 241 ASP B 248 1 8 HELIX 18 18 VAL B 357 ILE B 361 5 5 HELIX 19 19 GLU B 362 PHE B 370 1 9 HELIX 20 20 SER B 373 LYS B 382 1 10 HELIX 21 21 ARG C 35 SER C 40 1 6 HELIX 22 22 PRO C 41 ARG C 47 5 7 HELIX 23 23 SER C 148 PHE C 153 5 6 HELIX 24 24 SER C 154 HIS C 163 1 10 HELIX 25 25 GLU C 165 LEU C 173 1 9 HELIX 26 26 GLU C 178 GLN C 182 5 5 HELIX 27 27 SER C 191 SER C 199 1 9 HELIX 28 28 SER C 206 ILE C 210 5 5 HELIX 29 29 ASN C 241 ASP C 246 1 6 HELIX 30 30 VAL C 357 ILE C 361 5 5 HELIX 31 31 GLU C 362 PHE C 370 1 9 HELIX 32 32 SER C 373 ARG C 379 1 7 HELIX 33 33 LEU C 380 GLN C 384 5 5 SHEET 1 A 7 TYR A 12 PHE A 13 0 SHEET 2 A 7 VAL A 316 ILE A 319 -1 N VAL A 316 O PHE A 13 SHEET 3 A 7 ILE A 271 ILE A 276 -1 O VAL A 272 N ILE A 319 SHEET 4 A 7 LEU A 333 ILE A 340 -1 N LEU A 336 O VAL A 275 SHEET 5 A 7 PHE A 250 ILE A 256 -1 O PHE A 250 N GLY A 339 SHEET 6 A 7 GLY A 231 ILE A 236 -1 O LYS A 232 N ASP A 255 SHEET 7 A 7 TYR A 226 ASN A 228 -1 O TYR A 226 N PHE A 233 SHEET 1 B 7 PHE A 19 GLU A 24 0 SHEET 2 B 7 GLY A 28 LEU A 33 -1 O ILE A 30 N LEU A 22 SHEET 3 B 7 ARG A 50 SER A 56 -1 O ILE A 51 N LEU A 33 SHEET 4 B 7 LEU A 120 PRO A 128 -1 N LEU A 120 O SER A 56 SHEET 5 B 7 ALA A 69 SER A 77 -1 N ASP A 70 O ILE A 127 SHEET 6 B 7 ASP A 99 ILE A 103 -1 O ASP A 99 N VAL A 75 SHEET 7 B 7 PHE A 217 ASN A 218 -1 N PHE A 217 O ALA A 100 SHEET 1 C 6 ILE A 187 GLU A 189 0 SHEET 2 C 6 THR A 60 LEU A 62 -1 O ILE A 61 N VAL A 188 SHEET 3 C 6 THR A 108 ASN A 113 -1 O LEU A 111 N LEU A 62 SHEET 4 C 6 ALA A 80 ASN A 86 -1 O ILE A 81 N VAL A 112 SHEET 5 C 6 ASP A 89 LEU A 95 -1 O ASP A 89 N ASN A 86 SHEET 6 C 6 LYS A 203 SER A 204 1 N LYS A 203 O SER A 92 SHEET 1 D 2 HIS A 65 ALA A 67 0 SHEET 2 D 2 ASP A 137 PHE A 139 -1 N PHE A 138 O HIS A 66 SHEET 1 E 7 PHE A 389 ASP A 391 0 SHEET 2 E 7 ALA A 260 ASN A 267 -1 N LEU A 261 O VAL A 390 SHEET 3 E 7 ARG A 347 PHE A 349 -1 N ASN A 348 O PHE A 266 SHEET 4 E 7 ALA A 260 ASN A 267 -1 O PHE A 266 N ASN A 348 SHEET 5 E 7 PHE A 325 SER A 331 -1 N PHE A 325 O HIS A 265 SHEET 6 E 7 ASP A 280 ILE A 288 -1 O ASP A 280 N THR A 330 SHEET 7 E 7 VAL A 304 LEU A 311 -1 N GLN A 305 O GLY A 287 SHEET 1 F15 TYR B 12 PHE B 13 0 SHEET 2 F15 VAL B 316 ILE B 319 -1 O VAL B 316 N PHE B 13 SHEET 3 F15 ILE B 271 ILE B 288 -1 O VAL B 272 N ILE B 319 SHEET 4 F15 VAL B 304 LEU B 311 -1 O GLN B 305 N GLY B 287 SHEET 5 F15 ILE B 271 ILE B 288 -1 O ALA B 281 N LEU B 311 SHEET 6 F15 PHE B 325 ILE B 340 -1 N VAL B 326 O GLU B 284 SHEET 7 F15 ALA B 260 ASN B 267 -1 O ALA B 260 N ALA B 329 SHEET 8 F15 ARG B 347 PHE B 349 -1 N ASN B 348 O PHE B 266 SHEET 9 F15 ALA B 260 ASN B 267 -1 O PHE B 266 N ASN B 348 SHEET 10 F15 PHE B 389 ASP B 391 -1 N VAL B 390 O LEU B 261 SHEET 11 F15 ALA B 260 ASN B 267 -1 N LEU B 261 O VAL B 390 SHEET 12 F15 PHE B 325 ILE B 340 -1 N PHE B 325 O HIS B 265 SHEET 13 F15 ILE B 249 ILE B 256 -1 O PHE B 250 N GLY B 339 SHEET 14 F15 GLY B 231 ILE B 236 -1 N LYS B 232 O ASP B 255 SHEET 15 F15 TYR B 226 ASN B 228 -1 O TYR B 226 N PHE B 233 SHEET 1 G 7 THR B 21 ASN B 25 0 SHEET 2 G 7 GLY B 28 LEU B 32 -1 N GLY B 28 O ASN B 25 SHEET 3 G 7 ARG B 50 SER B 56 -1 N GLN B 53 O ARG B 31 SHEET 4 G 7 LEU B 120 PRO B 128 -1 O LEU B 120 N SER B 56 SHEET 5 G 7 ALA B 69 VAL B 75 -1 N ASP B 70 O ILE B 127 SHEET 6 G 7 ASP B 99 ILE B 103 -1 O ASP B 99 N VAL B 75 SHEET 7 G 7 PHE B 217 ASN B 218 -1 O PHE B 217 N ALA B 100 SHEET 1 H 2 ILE B 61 LEU B 62 0 SHEET 2 H 2 ILE B 187 VAL B 188 -1 N VAL B 188 O ILE B 61 SHEET 1 I 2 HIS B 65 ALA B 67 0 SHEET 2 I 2 ASP B 137 PHE B 139 -1 N PHE B 138 O HIS B 66 SHEET 1 J 3 ARG B 90 LEU B 95 0 SHEET 2 J 3 ALA B 80 VAL B 85 -1 O ALA B 80 N LEU B 95 SHEET 3 J 3 THR B 108 VAL B 112 -1 O THR B 108 N VAL B 85 SHEET 1 K 7 TYR C 12 PHE C 13 0 SHEET 2 K 7 VAL C 316 ILE C 319 -1 O VAL C 316 N PHE C 13 SHEET 3 K 7 ILE C 271 GLU C 278 -1 O VAL C 272 N ILE C 319 SHEET 4 K 7 LEU C 333 ILE C 340 -1 O ASN C 334 N ASN C 277 SHEET 5 K 7 ILE C 249 ILE C 256 -1 O PHE C 250 N GLY C 339 SHEET 6 K 7 GLY C 231 ILE C 236 -1 N LYS C 232 O ASP C 255 SHEET 7 K 7 TYR C 226 ASN C 228 -1 O TYR C 226 N PHE C 233 SHEET 1 L 7 PHE C 19 ASN C 25 0 SHEET 2 L 7 GLY C 28 LEU C 33 -1 O GLY C 28 N ASN C 25 SHEET 3 L 7 ARG C 50 SER C 56 -1 O ILE C 51 N LEU C 33 SHEET 4 L 7 LEU C 120 PRO C 128 -1 N LEU C 120 O SER C 56 SHEET 5 L 7 ALA C 69 SER C 77 -1 O ASP C 70 N ILE C 127 SHEET 6 L 7 ASP C 99 ILE C 103 -1 O ASP C 99 N VAL C 75 SHEET 7 L 7 PHE C 217 ASN C 218 -1 N PHE C 217 O ALA C 100 SHEET 1 M 2 THR C 60 LEU C 62 0 SHEET 2 M 2 ILE C 187 GLU C 189 -1 O VAL C 188 N ILE C 61 SHEET 1 N 2 HIS C 65 ALA C 67 0 SHEET 2 N 2 ASP C 137 PHE C 139 -1 N PHE C 138 O HIS C 66 SHEET 1 O 4 THR C 108 VAL C 112 0 SHEET 2 O 4 ALA C 80 VAL C 85 -1 N ILE C 81 O VAL C 112 SHEET 3 O 4 ARG C 90 LEU C 95 -1 N ASP C 91 O LEU C 84 SHEET 4 O 4 LYS C 203 SER C 204 1 O LYS C 203 N ASN C 94 SHEET 1 P 7 ARG C 347 PHE C 349 0 SHEET 2 P 7 ALA C 260 ASN C 267 -1 O PHE C 266 N ASN C 348 SHEET 3 P 7 PHE C 389 ASP C 391 -1 O VAL C 390 N LEU C 261 SHEET 4 P 7 ALA C 260 ASN C 267 -1 N LEU C 261 O VAL C 390 SHEET 5 P 7 PHE C 325 ALA C 329 -1 N PHE C 325 O HIS C 265 SHEET 6 P 7 ASP C 280 ILE C 288 -1 N ASN C 282 O ASN C 328 SHEET 7 P 7 VAL C 304 SER C 312 -1 N GLN C 305 O GLY C 287 CRYST1 80.510 63.480 131.430 90.00 90.01 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012421 0.000000 0.000002 0.00000 SCALE2 0.000000 0.015753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007609 0.00000