HEADER PROTEIN BINDING 02-OCT-01 1IRH TITLE THE SOLUTION STRUCTURE OF THE THIRD KUNITZ DOMAIN OF TISSUE FACTOR TITLE 2 PATHWAY INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TISSUE FACTOR PATHWAY INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE THIRD KUNITZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS NON-PROTEASE INHIBITOR, KUNITZ DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MINE,T.YAMAZAKI,T.MIYATA,S.HARA,H.KATO REVDAT 6 27-DEC-23 1IRH 1 REMARK REVDAT 5 23-FEB-22 1IRH 1 REMARK REVDAT 4 24-FEB-09 1IRH 1 VERSN REVDAT 3 14-JAN-03 1IRH 1 REMARK REVDAT 2 13-FEB-02 1IRH 1 COMPND REVDAT 1 06-FEB-02 1IRH 0 JRNL AUTH S.MINE,T.YAMAZAKI,T.MIYATA,S.HARA,H.KATO JRNL TITL STRUCTURAL MECHANISM FOR HEPARIN-BINDING OF THE THIRD KUNITZ JRNL TITL 2 DOMAIN OF HUMAN TISSUE FACTOR PATHWAY INHIBITOR. JRNL REF BIOCHEMISTRY V. 41 78 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11772005 JRNL DOI 10.1021/BI011299G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IRH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000005211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM THE THIRD KUNITZ DOMAIN OF REMARK 210 TISSUE FACTOR PATHWAY INHIBITOR REMARK 210 U-15N; 20MM NA-PHOSPHATE BUFFER; REMARK 210 90% H2O, 10% D2O; 1MM THE THIRD REMARK 210 KUNITZ DOMAIN OF TISSUE FACTOR REMARK 210 PATHWAY INHIBITOR U-15N, 13C; REMARK 210 20MM NA-PHOSPHATE BUFFER; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNCO-TROSY; REMARK 210 HMQC-J; HCCH-TOCSY; HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED,BACK CALCULATED DATA REMARK 210 AGREE WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY,STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 -156.34 -62.02 REMARK 500 1 SER A 6 37.00 -142.24 REMARK 500 1 TRP A 7 15.83 -155.12 REMARK 500 1 LEU A 16 -81.65 -155.75 REMARK 500 1 CYS A 17 -165.95 -73.64 REMARK 500 1 ASN A 22 74.84 -152.39 REMARK 500 1 ALA A 57 -67.83 -96.53 REMARK 500 1 LYS A 60 86.91 53.39 REMARK 500 2 HIS A 3 50.41 -162.19 REMARK 500 2 SER A 6 36.45 -97.89 REMARK 500 2 TRP A 7 24.01 -155.89 REMARK 500 2 ALA A 12 97.53 -63.10 REMARK 500 2 ARG A 14 72.31 -153.06 REMARK 500 2 ARG A 18 54.04 -101.34 REMARK 500 2 GLU A 21 -153.53 -80.62 REMARK 500 2 ASN A 22 67.03 -160.29 REMARK 500 2 ASN A 44 -154.90 -89.69 REMARK 500 3 LEU A 16 -44.39 -160.05 REMARK 500 3 CYS A 41 27.94 -151.75 REMARK 500 3 ALA A 57 -66.12 -98.89 REMARK 500 3 LYS A 60 79.34 57.45 REMARK 500 4 HIS A 3 176.65 55.26 REMARK 500 4 PRO A 5 -155.10 -61.93 REMARK 500 4 TRP A 7 15.85 -150.18 REMARK 500 4 LEU A 16 -85.07 56.99 REMARK 500 4 CYS A 17 -161.75 -119.01 REMARK 500 4 ARG A 18 103.98 -58.87 REMARK 500 4 ASN A 22 70.81 -157.09 REMARK 500 4 LYS A 37 93.69 -68.92 REMARK 500 4 SER A 39 -172.20 -62.68 REMARK 500 4 CYS A 41 -72.88 -145.35 REMARK 500 4 ASN A 44 -159.66 -78.23 REMARK 500 5 PHE A 2 98.45 53.92 REMARK 500 5 PRO A 5 -164.46 -60.69 REMARK 500 5 SER A 6 37.63 -154.83 REMARK 500 5 PRO A 11 -173.38 -63.49 REMARK 500 5 CYS A 17 179.58 54.57 REMARK 500 5 ALA A 19 149.72 -174.33 REMARK 500 5 GLU A 21 -158.62 -89.31 REMARK 500 5 ASN A 22 88.42 -160.95 REMARK 500 5 LYS A 60 71.92 50.87 REMARK 500 6 HIS A 3 -56.11 -127.96 REMARK 500 6 PRO A 5 -174.79 -60.83 REMARK 500 6 LEU A 16 -44.47 -139.22 REMARK 500 6 GLU A 21 -161.96 -79.75 REMARK 500 7 PHE A 2 35.53 -141.31 REMARK 500 7 PRO A 5 -169.48 -59.67 REMARK 500 7 TRP A 7 13.95 -146.71 REMARK 500 7 ALA A 12 104.11 -58.60 REMARK 500 7 CYS A 17 -157.78 -157.15 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 14 0.22 SIDE CHAIN REMARK 500 1 ARG A 18 0.27 SIDE CHAIN REMARK 500 1 ARG A 23 0.28 SIDE CHAIN REMARK 500 1 ARG A 34 0.31 SIDE CHAIN REMARK 500 1 ARG A 56 0.26 SIDE CHAIN REMARK 500 2 ARG A 14 0.30 SIDE CHAIN REMARK 500 2 ARG A 18 0.30 SIDE CHAIN REMARK 500 2 ARG A 23 0.23 SIDE CHAIN REMARK 500 2 ARG A 34 0.29 SIDE CHAIN REMARK 500 2 ARG A 56 0.32 SIDE CHAIN REMARK 500 3 ARG A 14 0.31 SIDE CHAIN REMARK 500 3 ARG A 18 0.32 SIDE CHAIN REMARK 500 3 ARG A 23 0.24 SIDE CHAIN REMARK 500 3 ARG A 34 0.31 SIDE CHAIN REMARK 500 3 ARG A 56 0.21 SIDE CHAIN REMARK 500 4 ARG A 14 0.28 SIDE CHAIN REMARK 500 4 ARG A 18 0.29 SIDE CHAIN REMARK 500 4 ARG A 23 0.28 SIDE CHAIN REMARK 500 4 ARG A 34 0.31 SIDE CHAIN REMARK 500 4 ARG A 56 0.25 SIDE CHAIN REMARK 500 5 ARG A 14 0.28 SIDE CHAIN REMARK 500 5 ARG A 18 0.29 SIDE CHAIN REMARK 500 5 ARG A 23 0.23 SIDE CHAIN REMARK 500 5 ARG A 34 0.31 SIDE CHAIN REMARK 500 5 ARG A 56 0.23 SIDE CHAIN REMARK 500 6 ARG A 14 0.32 SIDE CHAIN REMARK 500 6 ARG A 18 0.23 SIDE CHAIN REMARK 500 6 ARG A 23 0.21 SIDE CHAIN REMARK 500 6 ARG A 34 0.28 SIDE CHAIN REMARK 500 6 ARG A 56 0.28 SIDE CHAIN REMARK 500 7 ARG A 14 0.31 SIDE CHAIN REMARK 500 7 ARG A 18 0.28 SIDE CHAIN REMARK 500 7 ARG A 23 0.30 SIDE CHAIN REMARK 500 7 ARG A 34 0.32 SIDE CHAIN REMARK 500 7 ARG A 56 0.29 SIDE CHAIN REMARK 500 8 ARG A 14 0.21 SIDE CHAIN REMARK 500 8 ARG A 18 0.30 SIDE CHAIN REMARK 500 8 ARG A 23 0.31 SIDE CHAIN REMARK 500 8 ARG A 34 0.24 SIDE CHAIN REMARK 500 8 ARG A 56 0.30 SIDE CHAIN REMARK 500 9 ARG A 14 0.31 SIDE CHAIN REMARK 500 9 ARG A 18 0.31 SIDE CHAIN REMARK 500 9 ARG A 23 0.22 SIDE CHAIN REMARK 500 9 ARG A 34 0.20 SIDE CHAIN REMARK 500 9 ARG A 56 0.31 SIDE CHAIN REMARK 500 10 ARG A 14 0.20 SIDE CHAIN REMARK 500 10 ARG A 18 0.29 SIDE CHAIN REMARK 500 10 ARG A 23 0.26 SIDE CHAIN REMARK 500 10 ARG A 34 0.30 SIDE CHAIN REMARK 500 10 ARG A 56 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 100 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1IRH A 1 61 UNP P10646 TFPI1_HUMAN 210 270 SEQRES 1 A 61 GLU PHE HIS GLY PRO SER TRP CYS LEU THR PRO ALA ASP SEQRES 2 A 61 ARG GLY LEU CYS ARG ALA ASN GLU ASN ARG PHE TYR TYR SEQRES 3 A 61 ASN SER VAL ILE GLY LYS CYS ARG PRO PHE LYS TYR SER SEQRES 4 A 61 GLY CYS GLY GLY ASN GLU ASN ASN PHE THR SER LYS GLN SEQRES 5 A 61 GLU CYS LEU ARG ALA CYS LYS LYS GLY HELIX 1 1 LYS A 51 LYS A 59 1 9 SHEET 1 A 2 ARG A 23 TYR A 26 0 SHEET 2 A 2 CYS A 33 PHE A 36 -1 O PHE A 36 N ARG A 23 SSBOND 1 CYS A 8 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 17 CYS A 41 1555 1555 2.02 SSBOND 3 CYS A 33 CYS A 54 1555 1555 2.02 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1