data_1ITO # _entry.id 1ITO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ITO RCSB RCSB005263 WWPDB D_1000005263 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1DQD _pdbx_database_related.details '1DQD contains cathepsin B-CA074 complex.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ITO _pdbx_database_status.recvd_initial_deposition_date 2002-01-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamamoto, A.' 1 'Tomoo, T.' 2 'Matsugi, K.' 3 'Hara, T.' 4 'In, Y.' 5 'Murata, M.' 6 'Kitamura, K.' 7 'Ishida, T.' 8 # _citation.id primary _citation.title 'Structural basis for development of cathepsin B-specific noncovalent-type inhibitor: crystal structure of cathepsin B-E64c complex' _citation.journal_abbrev BIOCHIM.BIOPHYS.ACTA _citation.journal_volume 1597 _citation.page_first 244 _citation.page_last 251 _citation.year 2002 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12044902 _citation.pdbx_database_id_DOI '10.1016/S0167-4838(02)00284-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yamamoto, A.' 1 primary 'Tomoo, T.' 2 primary 'Matsugi, K.' 3 primary 'Hara, T.' 4 primary 'In, Y.' 5 primary 'Murata, M.' 6 primary 'Kitamura, K.' 7 primary 'Ishida, T.' 8 # _cell.entry_id 1ITO _cell.length_a 72.578 _cell.length_b 72.578 _cell.length_c 141.835 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ITO _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Cathepsin B' 27919.037 1 3.4.22.1 ? ? ? 2 non-polymer syn 'N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE' 316.393 1 ? ? ? ? 3 water nat water 18.015 130 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAW NFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEI MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHC GIESEIVAGMPCTHQY ; _entity_poly.pdbx_seq_one_letter_code_can ;LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAW NFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEI MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHC GIESEIVAGMPCTHQY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 GLU n 1 4 SER n 1 5 PHE n 1 6 ASP n 1 7 ALA n 1 8 ARG n 1 9 GLU n 1 10 GLN n 1 11 TRP n 1 12 PRO n 1 13 ASN n 1 14 CYS n 1 15 PRO n 1 16 THR n 1 17 ILE n 1 18 LYS n 1 19 GLU n 1 20 ILE n 1 21 ARG n 1 22 ASP n 1 23 GLN n 1 24 GLY n 1 25 SER n 1 26 CYS n 1 27 GLY n 1 28 SER n 1 29 CYS n 1 30 TRP n 1 31 ALA n 1 32 PHE n 1 33 GLY n 1 34 ALA n 1 35 VAL n 1 36 GLU n 1 37 ALA n 1 38 ILE n 1 39 SER n 1 40 ASP n 1 41 ARG n 1 42 ILE n 1 43 CYS n 1 44 ILE n 1 45 HIS n 1 46 SER n 1 47 ASN n 1 48 GLY n 1 49 ARG n 1 50 VAL n 1 51 ASN n 1 52 VAL n 1 53 GLU n 1 54 VAL n 1 55 SER n 1 56 ALA n 1 57 GLU n 1 58 ASP n 1 59 MET n 1 60 LEU n 1 61 THR n 1 62 CYS n 1 63 CYS n 1 64 GLY n 1 65 GLY n 1 66 GLU n 1 67 CYS n 1 68 GLY n 1 69 ASP n 1 70 GLY n 1 71 CYS n 1 72 ASN n 1 73 GLY n 1 74 GLY n 1 75 PHE n 1 76 PRO n 1 77 SER n 1 78 GLY n 1 79 ALA n 1 80 TRP n 1 81 ASN n 1 82 PHE n 1 83 TRP n 1 84 THR n 1 85 LYS n 1 86 LYS n 1 87 GLY n 1 88 LEU n 1 89 VAL n 1 90 SER n 1 91 GLY n 1 92 GLY n 1 93 LEU n 1 94 TYR n 1 95 ASN n 1 96 SER n 1 97 HIS n 1 98 VAL n 1 99 GLY n 1 100 CYS n 1 101 ARG n 1 102 PRO n 1 103 TYR n 1 104 SER n 1 105 ILE n 1 106 PRO n 1 107 PRO n 1 108 CYS n 1 109 GLU n 1 110 HIS n 1 111 HIS n 1 112 VAL n 1 113 ASN n 1 114 GLY n 1 115 SER n 1 116 ARG n 1 117 PRO n 1 118 PRO n 1 119 CYS n 1 120 THR n 1 121 GLY n 1 122 GLU n 1 123 GLY n 1 124 ASP n 1 125 THR n 1 126 PRO n 1 127 LYS n 1 128 CYS n 1 129 SER n 1 130 LYS n 1 131 THR n 1 132 CYS n 1 133 GLU n 1 134 PRO n 1 135 GLY n 1 136 TYR n 1 137 SER n 1 138 PRO n 1 139 SER n 1 140 TYR n 1 141 LYS n 1 142 GLU n 1 143 ASP n 1 144 LYS n 1 145 HIS n 1 146 PHE n 1 147 GLY n 1 148 CYS n 1 149 SER n 1 150 SER n 1 151 TYR n 1 152 SER n 1 153 VAL n 1 154 ALA n 1 155 ASN n 1 156 ASN n 1 157 GLU n 1 158 LYS n 1 159 GLU n 1 160 ILE n 1 161 MET n 1 162 ALA n 1 163 GLU n 1 164 ILE n 1 165 TYR n 1 166 LYS n 1 167 ASN n 1 168 GLY n 1 169 PRO n 1 170 VAL n 1 171 GLU n 1 172 GLY n 1 173 ALA n 1 174 PHE n 1 175 SER n 1 176 VAL n 1 177 TYR n 1 178 SER n 1 179 ASP n 1 180 PHE n 1 181 LEU n 1 182 LEU n 1 183 TYR n 1 184 LYS n 1 185 SER n 1 186 GLY n 1 187 VAL n 1 188 TYR n 1 189 GLN n 1 190 HIS n 1 191 VAL n 1 192 SER n 1 193 GLY n 1 194 GLU n 1 195 ILE n 1 196 MET n 1 197 GLY n 1 198 GLY n 1 199 HIS n 1 200 ALA n 1 201 ILE n 1 202 ARG n 1 203 ILE n 1 204 LEU n 1 205 GLY n 1 206 TRP n 1 207 GLY n 1 208 VAL n 1 209 GLU n 1 210 ASN n 1 211 GLY n 1 212 THR n 1 213 PRO n 1 214 TYR n 1 215 TRP n 1 216 LEU n 1 217 VAL n 1 218 GLY n 1 219 ASN n 1 220 SER n 1 221 TRP n 1 222 ASN n 1 223 THR n 1 224 ASP n 1 225 TRP n 1 226 GLY n 1 227 ASP n 1 228 ASN n 1 229 GLY n 1 230 PHE n 1 231 PHE n 1 232 LYS n 1 233 ILE n 1 234 LEU n 1 235 ARG n 1 236 GLY n 1 237 GLN n 1 238 ASP n 1 239 HIS n 1 240 CYS n 1 241 GLY n 1 242 ILE n 1 243 GLU n 1 244 SER n 1 245 GLU n 1 246 ILE n 1 247 VAL n 1 248 ALA n 1 249 GLY n 1 250 MET n 1 251 PRO n 1 252 CYS n 1 253 THR n 1 254 HIS n 1 255 GLN n 1 256 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue Spleen _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATB_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAW NFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEI MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHC GIESEIVAGMPCTHQY ; _struct_ref.pdbx_align_begin 80 _struct_ref.pdbx_db_accession P07688 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ITO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 256 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07688 _struct_ref_seq.db_align_beg 80 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 335 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 256 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 E6C non-polymer . 'N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE' ? 'C15 H28 N2 O5' 316.393 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ITO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.21 _exptl_crystal.density_Matthews 3.34 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pdbx_details 'Sodium phosphate, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1ITO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.29 _reflns.number_obs 15102 _reflns.number_all 17925 _reflns.percent_possible_obs 84.3 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.286 _reflns_shell.d_res_low 2.300 _reflns_shell.percent_possible_all 62.1 _reflns_shell.Rmerge_I_obs 0.211 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ITO _refine.ls_number_reflns_obs 14759 _refine.ls_number_reflns_all 17290 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.286 _refine.ls_percent_reflns_obs 85.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1494 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.326 _refine.aniso_B[2][2] 2.326 _refine.aniso_B[3][3] -4.653 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1QDQ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ITO _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.23 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1908 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 2060 _refine_hist.d_res_high 2.286 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.23 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.97 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.R_factor_R_free 0.2486 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2178 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.38 _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_free 117 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.percent_reflns_obs 75.7 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1278 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ITO _struct.title 'Crystal Structure Analysis of Bovine Spleen Cathepsin B-E64c complex' _struct.pdbx_descriptor 'Cathepsin B(E.C.3.4.22.1)/ N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ITO _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Cathepsin B, Cysteine Protease, E64c, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 7 ? TRP A 11 ? ALA A 7 TRP A 11 1 ? 5 HELX_P HELX_P2 2 CYS A 14 ? GLU A 19 ? CYS A 14 GLU A 19 5 ? 6 HELX_P HELX_P3 3 SER A 28 ? HIS A 45 ? SER A 28 HIS A 45 1 ? 18 HELX_P HELX_P4 4 SER A 55 ? CYS A 63 ? SER A 55 CYS A 63 1 ? 9 HELX_P HELX_P5 5 GLY A 64 ? GLY A 68 ? GLY A 64 GLY A 68 5 ? 5 HELX_P HELX_P6 6 ASP A 69 ? GLY A 73 ? ASP A 69 GLY A 73 5 ? 5 HELX_P HELX_P7 7 PHE A 75 ? LYS A 86 ? PHE A 75 LYS A 86 1 ? 12 HELX_P HELX_P8 8 SER A 139 ? LYS A 144 ? SER A 139 LYS A 144 5 ? 6 HELX_P HELX_P9 9 ASN A 156 ? GLY A 168 ? ASN A 156 GLY A 168 1 ? 13 HELX_P HELX_P10 10 ASP A 179 ? LEU A 181 ? ASP A 179 LEU A 181 5 ? 3 HELX_P HELX_P11 11 ASP A 238 ? ILE A 242 ? ASP A 238 ILE A 242 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 14 A CYS 43 1_555 ? ? ? ? ? ? ? 2.036 ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 26 A CYS 71 1_555 ? ? ? ? ? ? ? 2.032 ? disulf3 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 62 A CYS 128 1_555 ? ? ? ? ? ? ? 2.041 ? disulf4 disulf ? ? A CYS 63 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 63 A CYS 67 1_555 ? ? ? ? ? ? ? 2.019 ? disulf5 disulf ? ? A CYS 100 SG ? ? ? 1_555 A CYS 132 SG ? ? A CYS 100 A CYS 132 1_555 ? ? ? ? ? ? ? 2.035 ? disulf6 disulf ? ? A CYS 108 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 108 A CYS 119 1_555 ? ? ? ? ? ? ? 2.028 ? disulf7 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 252 SG ? ? A CYS 148 A CYS 252 1_555 ? ? ? ? ? ? ? 2.038 ? covale1 covale ? ? A CYS 29 SG ? ? ? 1_555 B E6C . C2 ? ? A CYS 29 A E6C 700 1_555 ? ? ? ? ? ? ? 1.811 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 137 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 137 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 138 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 138 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 170 ? TYR A 177 ? VAL A 170 TYR A 177 A 2 ILE A 195 ? GLU A 209 ? ILE A 195 GLU A 209 A 3 PHE A 5 ? ASP A 6 ? PHE A 5 ASP A 6 B 1 VAL A 170 ? TYR A 177 ? VAL A 170 TYR A 177 B 2 ILE A 195 ? GLU A 209 ? ILE A 195 GLU A 209 B 3 THR A 212 ? GLY A 218 ? THR A 212 GLY A 218 B 4 PHE A 230 ? LEU A 234 ? PHE A 230 LEU A 234 B 5 VAL A 187 ? TYR A 188 ? VAL A 187 TYR A 188 C 1 GLY A 147 ? VAL A 153 ? GLY A 147 VAL A 153 C 2 ILE A 246 ? PRO A 251 ? ILE A 246 PRO A 251 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 176 ? N VAL A 176 O MET A 196 ? O MET A 196 A 2 3 O TRP A 206 ? O TRP A 206 N PHE A 5 ? N PHE A 5 B 1 2 N VAL A 176 ? N VAL A 176 O MET A 196 ? O MET A 196 B 2 3 N GLY A 205 ? N GLY A 205 O LEU A 216 ? O LEU A 216 B 3 4 N VAL A 217 ? N VAL A 217 O PHE A 231 ? O PHE A 231 B 4 5 O LYS A 232 ? O LYS A 232 N TYR A 188 ? N TYR A 188 C 1 2 N VAL A 153 ? N VAL A 153 O ILE A 246 ? O ILE A 246 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE E6C A 700' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLN A 23 ? GLN A 23 . ? 1_555 ? 2 AC1 16 GLY A 27 ? GLY A 27 . ? 1_555 ? 3 AC1 16 SER A 28 ? SER A 28 . ? 1_555 ? 4 AC1 16 CYS A 29 ? CYS A 29 . ? 1_555 ? 5 AC1 16 TRP A 30 ? TRP A 30 . ? 1_555 ? 6 AC1 16 GLY A 73 ? GLY A 73 . ? 1_555 ? 7 AC1 16 GLY A 74 ? GLY A 74 . ? 1_555 ? 8 AC1 16 PHE A 75 ? PHE A 75 . ? 1_555 ? 9 AC1 16 SER A 175 ? SER A 175 . ? 7_555 ? 10 AC1 16 ILE A 195 ? ILE A 195 . ? 7_555 ? 11 AC1 16 GLY A 198 ? GLY A 198 . ? 1_555 ? 12 AC1 16 HIS A 199 ? HIS A 199 . ? 1_555 ? 13 AC1 16 ALA A 200 ? ALA A 200 . ? 1_555 ? 14 AC1 16 GLU A 245 ? GLU A 245 . ? 1_555 ? 15 AC1 16 HOH C . ? HOH A 460 . ? 1_555 ? 16 AC1 16 HOH C . ? HOH A 559 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ITO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ITO _atom_sites.fract_transf_matrix[1][1] 0.013778 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013778 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007050 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 GLY 48 48 ? ? ? A . n A 1 49 ARG 49 49 ? ? ? A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 TRP 83 83 83 TRP TRP A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 CYS 108 108 108 CYS CYS A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 CYS 128 128 128 CYS CYS A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 CYS 132 132 132 CYS CYS A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 MET 161 161 161 MET MET A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 HIS 190 190 190 HIS HIS A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 MET 196 196 196 MET MET A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 HIS 199 199 199 HIS HIS A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ARG 202 202 202 ARG ARG A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 TRP 206 206 206 TRP TRP A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 PRO 213 213 213 PRO PRO A . n A 1 214 TYR 214 214 214 TYR TYR A . n A 1 215 TRP 215 215 215 TRP TRP A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 TRP 221 221 221 TRP TRP A . n A 1 222 ASN 222 222 222 ASN ASN A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 TRP 225 225 225 TRP TRP A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 PHE 231 231 231 PHE PHE A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 HIS 239 239 239 HIS HIS A . n A 1 240 CYS 240 240 240 CYS CYS A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 MET 250 250 250 MET MET A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 CYS 252 252 252 CYS CYS A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 HIS 254 254 ? ? ? A . n A 1 255 GLN 255 255 ? ? ? A . n A 1 256 TYR 256 256 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E6C 1 700 700 E6C E6C A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 403 403 HOH HOH A . C 3 HOH 3 405 405 HOH HOH A . C 3 HOH 4 406 406 HOH HOH A . C 3 HOH 5 407 407 HOH HOH A . C 3 HOH 6 408 408 HOH HOH A . C 3 HOH 7 409 409 HOH HOH A . C 3 HOH 8 411 411 HOH HOH A . C 3 HOH 9 413 413 HOH HOH A . C 3 HOH 10 415 415 HOH HOH A . C 3 HOH 11 416 416 HOH HOH A . C 3 HOH 12 417 417 HOH HOH A . C 3 HOH 13 419 419 HOH HOH A . C 3 HOH 14 421 421 HOH HOH A . C 3 HOH 15 422 422 HOH HOH A . C 3 HOH 16 423 423 HOH HOH A . C 3 HOH 17 425 425 HOH HOH A . C 3 HOH 18 427 427 HOH HOH A . C 3 HOH 19 429 429 HOH HOH A . C 3 HOH 20 430 430 HOH HOH A . C 3 HOH 21 431 431 HOH HOH A . C 3 HOH 22 432 432 HOH HOH A . C 3 HOH 23 433 433 HOH HOH A . C 3 HOH 24 434 434 HOH HOH A . C 3 HOH 25 435 435 HOH HOH A . C 3 HOH 26 436 436 HOH HOH A . C 3 HOH 27 437 437 HOH HOH A . C 3 HOH 28 438 438 HOH HOH A . C 3 HOH 29 439 439 HOH HOH A . C 3 HOH 30 440 440 HOH HOH A . C 3 HOH 31 441 441 HOH HOH A . C 3 HOH 32 442 442 HOH HOH A . C 3 HOH 33 443 443 HOH HOH A . C 3 HOH 34 444 444 HOH HOH A . C 3 HOH 35 445 445 HOH HOH A . C 3 HOH 36 446 446 HOH HOH A . C 3 HOH 37 447 447 HOH HOH A . C 3 HOH 38 448 448 HOH HOH A . C 3 HOH 39 451 451 HOH HOH A . C 3 HOH 40 452 452 HOH HOH A . C 3 HOH 41 453 453 HOH HOH A . C 3 HOH 42 455 455 HOH HOH A . C 3 HOH 43 456 456 HOH HOH A . C 3 HOH 44 457 457 HOH HOH A . C 3 HOH 45 459 459 HOH HOH A . C 3 HOH 46 460 460 HOH HOH A . C 3 HOH 47 462 462 HOH HOH A . C 3 HOH 48 463 463 HOH HOH A . C 3 HOH 49 464 464 HOH HOH A . C 3 HOH 50 465 465 HOH HOH A . C 3 HOH 51 467 467 HOH HOH A . C 3 HOH 52 468 468 HOH HOH A . C 3 HOH 53 469 469 HOH HOH A . C 3 HOH 54 470 470 HOH HOH A . C 3 HOH 55 472 472 HOH HOH A . C 3 HOH 56 473 473 HOH HOH A . C 3 HOH 57 474 474 HOH HOH A . C 3 HOH 58 475 475 HOH HOH A . C 3 HOH 59 476 476 HOH HOH A . C 3 HOH 60 478 478 HOH HOH A . C 3 HOH 61 479 479 HOH HOH A . C 3 HOH 62 480 480 HOH HOH A . C 3 HOH 63 482 482 HOH HOH A . C 3 HOH 64 483 483 HOH HOH A . C 3 HOH 65 485 485 HOH HOH A . C 3 HOH 66 486 486 HOH HOH A . C 3 HOH 67 487 487 HOH HOH A . C 3 HOH 68 488 488 HOH HOH A . C 3 HOH 69 489 489 HOH HOH A . C 3 HOH 70 491 491 HOH HOH A . C 3 HOH 71 492 492 HOH HOH A . C 3 HOH 72 494 494 HOH HOH A . C 3 HOH 73 495 495 HOH HOH A . C 3 HOH 74 496 496 HOH HOH A . C 3 HOH 75 497 497 HOH HOH A . C 3 HOH 76 498 498 HOH HOH A . C 3 HOH 77 499 499 HOH HOH A . C 3 HOH 78 500 500 HOH HOH A . C 3 HOH 79 501 501 HOH HOH A . C 3 HOH 80 502 502 HOH HOH A . C 3 HOH 81 504 504 HOH HOH A . C 3 HOH 82 507 507 HOH HOH A . C 3 HOH 83 508 508 HOH HOH A . C 3 HOH 84 510 510 HOH HOH A . C 3 HOH 85 511 511 HOH HOH A . C 3 HOH 86 512 512 HOH HOH A . C 3 HOH 87 513 513 HOH HOH A . C 3 HOH 88 516 516 HOH HOH A . C 3 HOH 89 517 517 HOH HOH A . C 3 HOH 90 521 521 HOH HOH A . C 3 HOH 91 522 522 HOH HOH A . C 3 HOH 92 523 523 HOH HOH A . C 3 HOH 93 524 524 HOH HOH A . C 3 HOH 94 525 525 HOH HOH A . C 3 HOH 95 526 526 HOH HOH A . C 3 HOH 96 528 528 HOH HOH A . C 3 HOH 97 529 529 HOH HOH A . C 3 HOH 98 531 531 HOH HOH A . C 3 HOH 99 532 532 HOH HOH A . C 3 HOH 100 535 535 HOH HOH A . C 3 HOH 101 536 536 HOH HOH A . C 3 HOH 102 537 537 HOH HOH A . C 3 HOH 103 539 539 HOH HOH A . C 3 HOH 104 540 540 HOH HOH A . C 3 HOH 105 542 542 HOH HOH A . C 3 HOH 106 544 544 HOH HOH A . C 3 HOH 107 545 545 HOH HOH A . C 3 HOH 108 546 546 HOH HOH A . C 3 HOH 109 548 548 HOH HOH A . C 3 HOH 110 549 549 HOH HOH A . C 3 HOH 111 550 550 HOH HOH A . C 3 HOH 112 552 552 HOH HOH A . C 3 HOH 113 553 553 HOH HOH A . C 3 HOH 114 554 554 HOH HOH A . C 3 HOH 115 555 555 HOH HOH A . C 3 HOH 116 556 556 HOH HOH A . C 3 HOH 117 558 558 HOH HOH A . C 3 HOH 118 559 559 HOH HOH A . C 3 HOH 119 560 560 HOH HOH A . C 3 HOH 120 562 562 HOH HOH A . C 3 HOH 121 563 563 HOH HOH A . C 3 HOH 122 565 565 HOH HOH A . C 3 HOH 123 567 567 HOH HOH A . C 3 HOH 124 568 568 HOH HOH A . C 3 HOH 125 569 569 HOH HOH A . C 3 HOH 126 572 572 HOH HOH A . C 3 HOH 127 573 573 HOH HOH A . C 3 HOH 128 574 574 HOH HOH A . C 3 HOH 129 575 575 HOH HOH A . C 3 HOH 130 576 576 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 CNS phasing . ? 2 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 240 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 240 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.930 _pdbx_validate_rmsd_bond.bond_target_value 1.818 _pdbx_validate_rmsd_bond.bond_deviation 0.112 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.017 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 46 ? ? -150.48 60.03 2 1 LYS A 184 ? ? -132.54 -47.61 3 1 ASN A 222 ? ? 74.42 176.52 4 1 GLU A 245 ? ? -140.56 56.86 5 1 ALA A 248 ? ? -161.49 -164.33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 48 ? A GLY 48 2 1 Y 1 A ARG 49 ? A ARG 49 3 1 Y 1 A HIS 254 ? A HIS 254 4 1 Y 1 A GLN 255 ? A GLN 255 5 1 Y 1 A TYR 256 ? A TYR 256 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE' E6C 3 water HOH #