HEADER NEUROPEPTIDE 19-FEB-02 1IU2 TITLE THE FIRST PDZ DOMAIN OF PSD-95 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSD-95; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ1 DOMAIN; COMPND 5 SYNONYM: PRESYNAPTIC DENSITY PROTEIN 95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PSD-95, PDZ DOMAIN, POST SYNAPTIC DENSITY, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR J.-F.LONG,H.TOCHIO,P.WANG,C.SALA,M.NIETHAMMER,M.SHENG,M.ZHANG REVDAT 4 27-DEC-23 1IU2 1 REMARK REVDAT 3 23-FEB-22 1IU2 1 REMARK REVDAT 2 24-FEB-09 1IU2 1 VERSN REVDAT 1 11-MAR-03 1IU2 0 JRNL AUTH J.-F.LONG,H.TOCHIO,P.WANG,J.-S.FAN,C.SALA,M.NIETHAMMER, JRNL AUTH 2 M.SHENG,M.ZHANG JRNL TITL SUPRAMODULAR STRUCTURE AND SYNERGISTIC TARGET BINDING OF THE JRNL TITL 2 N-TERMINAL TANDEM PDZ DOMAINS OF PSD-95 JRNL REF J.MOL.BIOL. V. 327 203 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12614619 JRNL DOI 10.1016/S0022-2836(03)00113-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.8, CNS 1.1 REMARK 3 AUTHORS : DELAGRIO (NMRPIPE), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IU2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000005275. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20MM KPI, 100MM KCL; 20MM KPI, REMARK 210 100MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ARG A 10 O SER A 82 1.54 REMARK 500 H LEU A 58 O TYR A 87 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 89.25 -49.35 REMARK 500 1 PRO A 26 64.13 -67.67 REMARK 500 1 ILE A 28 -152.29 -88.45 REMARK 500 1 ASP A 30 43.36 76.54 REMARK 500 1 VAL A 53 157.78 -49.14 REMARK 500 1 ASN A 61 -66.83 70.42 REMARK 500 1 GLU A 62 29.75 -163.39 REMARK 500 1 GLU A 67 44.62 -145.97 REMARK 500 1 SER A 82 -91.31 -130.45 REMARK 500 2 ARG A 10 88.89 -50.78 REMARK 500 2 PRO A 26 63.07 -65.96 REMARK 500 2 ILE A 28 -151.75 -93.73 REMARK 500 2 ASP A 30 45.38 76.88 REMARK 500 2 LYS A 38 134.24 -172.41 REMARK 500 2 ASN A 54 -2.01 76.60 REMARK 500 2 GLU A 62 33.43 78.86 REMARK 500 2 GLU A 67 76.27 -150.80 REMARK 500 2 SER A 82 -90.25 -142.19 REMARK 500 3 ARG A 10 88.92 -51.40 REMARK 500 3 PRO A 26 64.53 -67.27 REMARK 500 3 ILE A 28 -155.77 -83.13 REMARK 500 3 ASP A 30 42.12 -179.34 REMARK 500 3 LYS A 38 141.23 -170.29 REMARK 500 3 VAL A 53 157.51 -49.08 REMARK 500 3 ASN A 54 -2.31 77.03 REMARK 500 3 PHE A 59 143.90 -171.61 REMARK 500 3 GLU A 62 32.29 78.73 REMARK 500 3 GLU A 67 45.38 -140.56 REMARK 500 3 SER A 82 -90.05 -142.84 REMARK 500 4 ARG A 10 92.13 -44.76 REMARK 500 4 ASN A 12 -74.42 64.65 REMARK 500 4 PRO A 26 60.82 -67.93 REMARK 500 4 ILE A 28 -154.04 -90.39 REMARK 500 4 ASP A 30 40.09 172.80 REMARK 500 4 LYS A 38 136.06 -171.55 REMARK 500 4 VAL A 53 157.57 -49.17 REMARK 500 4 ASN A 54 -3.02 77.40 REMARK 500 4 GLU A 62 34.00 79.55 REMARK 500 4 VAL A 65 40.83 -95.97 REMARK 500 4 SER A 82 -89.38 -120.68 REMARK 500 5 ARG A 10 88.20 -47.83 REMARK 500 5 PRO A 26 62.17 -66.72 REMARK 500 5 ILE A 28 -151.40 -93.25 REMARK 500 5 ASP A 30 45.88 77.23 REMARK 500 5 LYS A 38 134.59 -172.52 REMARK 500 5 ASN A 54 -1.54 75.29 REMARK 500 5 ASN A 61 -67.56 67.82 REMARK 500 5 GLU A 62 32.27 -156.41 REMARK 500 5 VAL A 65 40.07 -92.82 REMARK 500 5 GLU A 67 70.64 -152.87 REMARK 500 REMARK 500 THIS ENTRY HAS 526 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IU0 RELATED DB: PDB REMARK 900 1IU0 IS ENERGY MINIMIZED AVERAGE COORDINATE DBREF 1IU2 A 1 91 UNP P31016 DLG4_RAT 61 151 SEQRES 1 A 91 MET GLU TYR GLU GLU ILE THR LEU GLU ARG GLY ASN SER SEQRES 2 A 91 GLY LEU GLY PHE SER ILE ALA GLY GLY THR ASP ASN PRO SEQRES 3 A 91 HIS ILE GLY ASP ASP PRO SER ILE PHE ILE THR LYS ILE SEQRES 4 A 91 ILE PRO GLY GLY ALA ALA ALA GLN ASP GLY ARG LEU ARG SEQRES 5 A 91 VAL ASN ASP SER ILE LEU PHE VAL ASN GLU VAL ASP VAL SEQRES 6 A 91 ARG GLU VAL THR HIS SER ALA ALA VAL GLU ALA LEU LYS SEQRES 7 A 91 GLU ALA GLY SER ILE VAL ARG LEU TYR VAL MET ARG ARG HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 ARG A 66 VAL A 68 5 3 HELIX 3 3 THR A 69 ALA A 80 1 12 SHEET 1 A 4 GLU A 2 GLU A 9 0 SHEET 2 A 4 ILE A 83 ARG A 90 -1 O LEU A 86 N ILE A 6 SHEET 3 A 4 PHE A 59 VAL A 60 -1 N PHE A 59 O TYR A 87 SHEET 4 A 4 VAL A 63 ASP A 64 -1 O VAL A 63 N VAL A 60 SHEET 1 B 3 PHE A 17 ALA A 20 0 SHEET 2 B 3 ILE A 34 ILE A 39 -1 O LYS A 38 N SER A 18 SHEET 3 B 3 SER A 56 ILE A 57 -1 O ILE A 57 N ILE A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1