data_1IU3 # _entry.id 1IU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IU3 pdb_00001iu3 10.2210/pdb1iu3/pdb NDB PD0297 ? ? RCSB RCSB005276 ? ? WWPDB D_1000005276 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IU3 _pdbx_database_status.recvd_initial_deposition_date 2002-02-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id trt001000146.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujikawa, N.' 1 'Kurumizaka, H.' 2 'Nureki, O.' 3 'Tanaka, Y.' 4 'Yamazoe, M.' 5 'Hiraga, S.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 32 _citation.page_first 82 _citation.page_last 92 _citation.year 2004 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14704346 _citation.pdbx_database_id_DOI 10.1093/nar/gkh173 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujikawa, N.' 1 ? primary 'Kurumizaka, H.' 2 ? primary 'Nureki, O.' 3 ? primary 'Tanaka, Y.' 4 ? primary 'Yamazoe, M.' 5 ? primary 'Hiraga, S.' 6 ? primary 'Yokoyama, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3'" 3062.044 2 ? ? ? ? 2 polymer syn "5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3'" 3025.989 2 ? ? ? ? 3 polymer man 'SeqA protein' 13035.929 2 ? ? 'DNA binding domain, Residues 71-181' ? 4 water nat water 18.015 131 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DG)(DA)(DT)(DC)(DC)(DA)(DA)' AAGGATCCAA A,D ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DA)(DT)(DC)(DC)(DT)(DT)' TTGGATCCTT B,E ? 3 'polypeptide(L)' no no ;GPLGSAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPY WVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI ; ;GPLGSAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPY WVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI ; C,F trt001000146.1 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DA n 1 10 DA n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DT n 3 1 GLY n 3 2 PRO n 3 3 LEU n 3 4 GLY n 3 5 SER n 3 6 ALA n 3 7 MET n 3 8 ARG n 3 9 GLU n 3 10 LEU n 3 11 LEU n 3 12 LEU n 3 13 SER n 3 14 ASP n 3 15 GLU n 3 16 TYR n 3 17 ALA n 3 18 GLU n 3 19 GLN n 3 20 LYS n 3 21 ARG n 3 22 ALA n 3 23 VAL n 3 24 ASN n 3 25 ARG n 3 26 PHE n 3 27 MET n 3 28 LEU n 3 29 LEU n 3 30 LEU n 3 31 SER n 3 32 THR n 3 33 LEU n 3 34 TYR n 3 35 SER n 3 36 LEU n 3 37 ASP n 3 38 ALA n 3 39 GLN n 3 40 ALA n 3 41 PHE n 3 42 ALA n 3 43 GLU n 3 44 ALA n 3 45 THR n 3 46 GLU n 3 47 SER n 3 48 LEU n 3 49 HIS n 3 50 GLY n 3 51 ARG n 3 52 THR n 3 53 ARG n 3 54 VAL n 3 55 TYR n 3 56 PHE n 3 57 ALA n 3 58 ALA n 3 59 ASP n 3 60 GLU n 3 61 GLN n 3 62 THR n 3 63 LEU n 3 64 LEU n 3 65 LYS n 3 66 ASN n 3 67 GLY n 3 68 ASN n 3 69 GLN n 3 70 THR n 3 71 LYS n 3 72 PRO n 3 73 LYS n 3 74 HIS n 3 75 VAL n 3 76 PRO n 3 77 GLY n 3 78 THR n 3 79 PRO n 3 80 TYR n 3 81 TRP n 3 82 VAL n 3 83 ILE n 3 84 THR n 3 85 ASN n 3 86 THR n 3 87 ASN n 3 88 THR n 3 89 GLY n 3 90 ARG n 3 91 LYS n 3 92 CYS n 3 93 SER n 3 94 MET n 3 95 ILE n 3 96 GLU n 3 97 HIS n 3 98 ILE n 3 99 MET n 3 100 GLN n 3 101 SER n 3 102 MET n 3 103 GLN n 3 104 PHE n 3 105 PRO n 3 106 ALA n 3 107 GLU n 3 108 LEU n 3 109 ILE n 3 110 GLU n 3 111 LYS n 3 112 VAL n 3 113 CYS n 3 114 GLY n 3 115 THR n 3 116 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene SeqA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5a _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 201 201 DA ADE A . n A 1 2 DA 2 202 202 DA ADE A . n A 1 3 DG 3 203 203 DG GUA A . n A 1 4 DG 4 204 204 DG GUA A . n A 1 5 DA 5 205 205 DA ADE A . n A 1 6 DT 6 206 206 DT THY A . n A 1 7 DC 7 207 207 DC CYT A . n A 1 8 DC 8 208 208 DC CYT A . n A 1 9 DA 9 209 209 DA ADE A . n A 1 10 DA 10 210 210 DA ADE A . n B 2 1 DT 1 211 211 DT THY B . n B 2 2 DT 2 212 212 DT THY B . n B 2 3 DG 3 213 213 DG GUA B . n B 2 4 DG 4 214 214 DG GUA B . n B 2 5 DA 5 215 215 DA ADE B . n B 2 6 DT 6 216 216 DT THY B . n B 2 7 DC 7 217 217 DC CYT B . n B 2 8 DC 8 218 218 DC CYT B . n B 2 9 DT 9 219 219 DT THY B . n B 2 10 DT 10 220 220 DT THY B . n C 1 1 DA 1 201 201 DA ADE D . n C 1 2 DA 2 202 202 DA ADE D . n C 1 3 DG 3 203 203 DG GUA D . n C 1 4 DG 4 204 204 DG GUA D . n C 1 5 DA 5 205 205 DA ADE D . n C 1 6 DT 6 206 206 DT THY D . n C 1 7 DC 7 207 207 DC CYT D . n C 1 8 DC 8 208 208 DC CYT D . n C 1 9 DA 9 209 209 DA ADE D . n C 1 10 DA 10 210 210 DA ADE D . n D 2 1 DT 1 211 211 DT THY E . n D 2 2 DT 2 212 212 DT THY E . n D 2 3 DG 3 213 213 DG GUA E . n D 2 4 DG 4 214 214 DG GUA E . n D 2 5 DA 5 215 215 DA ADE E . n D 2 6 DT 6 216 216 DT THY E . n D 2 7 DC 7 217 217 DC CYT E . n D 2 8 DC 8 218 218 DC CYT E . n D 2 9 DT 9 219 219 DT THY E . n D 2 10 DT 10 220 220 DT THY E . n E 3 1 GLY 1 1 ? ? ? C . n E 3 2 PRO 2 2 2 PRO PRO C . n E 3 3 LEU 3 3 3 LEU LEU C . n E 3 4 GLY 4 4 4 GLY GLY C . n E 3 5 SER 5 5 5 SER SER C . n E 3 6 ALA 6 6 6 ALA ALA C . n E 3 7 MET 7 7 7 MET MET C . n E 3 8 ARG 8 8 8 ARG ARG C . n E 3 9 GLU 9 9 9 GLU GLU C . n E 3 10 LEU 10 10 10 LEU LEU C . n E 3 11 LEU 11 11 11 LEU LEU C . n E 3 12 LEU 12 12 12 LEU LEU C . n E 3 13 SER 13 13 13 SER SER C . n E 3 14 ASP 14 14 14 ASP ASP C . n E 3 15 GLU 15 15 15 GLU GLU C . n E 3 16 TYR 16 16 16 TYR TYR C . n E 3 17 ALA 17 17 17 ALA ALA C . n E 3 18 GLU 18 18 18 GLU GLU C . n E 3 19 GLN 19 19 19 GLN GLN C . n E 3 20 LYS 20 20 20 LYS LYS C . n E 3 21 ARG 21 21 21 ARG ARG C . n E 3 22 ALA 22 22 22 ALA ALA C . n E 3 23 VAL 23 23 23 VAL VAL C . n E 3 24 ASN 24 24 24 ASN ASN C . n E 3 25 ARG 25 25 25 ARG ARG C . n E 3 26 PHE 26 26 26 PHE PHE C . n E 3 27 MET 27 27 27 MET MET C . n E 3 28 LEU 28 28 28 LEU LEU C . n E 3 29 LEU 29 29 29 LEU LEU C . n E 3 30 LEU 30 30 30 LEU LEU C . n E 3 31 SER 31 31 31 SER SER C . n E 3 32 THR 32 32 32 THR THR C . n E 3 33 LEU 33 33 33 LEU LEU C . n E 3 34 TYR 34 34 34 TYR TYR C . n E 3 35 SER 35 35 35 SER SER C . n E 3 36 LEU 36 36 36 LEU LEU C . n E 3 37 ASP 37 37 37 ASP ASP C . n E 3 38 ALA 38 38 38 ALA ALA C . n E 3 39 GLN 39 39 39 GLN GLN C . n E 3 40 ALA 40 40 40 ALA ALA C . n E 3 41 PHE 41 41 41 PHE PHE C . n E 3 42 ALA 42 42 42 ALA ALA C . n E 3 43 GLU 43 43 43 GLU GLU C . n E 3 44 ALA 44 44 44 ALA ALA C . n E 3 45 THR 45 45 45 THR THR C . n E 3 46 GLU 46 46 46 GLU GLU C . n E 3 47 SER 47 47 47 SER SER C . n E 3 48 LEU 48 48 48 LEU LEU C . n E 3 49 HIS 49 49 49 HIS HIS C . n E 3 50 GLY 50 50 50 GLY GLY C . n E 3 51 ARG 51 51 51 ARG ARG C . n E 3 52 THR 52 52 52 THR THR C . n E 3 53 ARG 53 53 53 ARG ARG C . n E 3 54 VAL 54 54 54 VAL VAL C . n E 3 55 TYR 55 55 55 TYR TYR C . n E 3 56 PHE 56 56 56 PHE PHE C . n E 3 57 ALA 57 57 57 ALA ALA C . n E 3 58 ALA 58 58 58 ALA ALA C . n E 3 59 ASP 59 59 59 ASP ASP C . n E 3 60 GLU 60 60 60 GLU GLU C . n E 3 61 GLN 61 61 61 GLN GLN C . n E 3 62 THR 62 62 62 THR THR C . n E 3 63 LEU 63 63 63 LEU LEU C . n E 3 64 LEU 64 64 64 LEU LEU C . n E 3 65 LYS 65 65 65 LYS LYS C . n E 3 66 ASN 66 66 66 ASN ASN C . n E 3 67 GLY 67 67 67 GLY GLY C . n E 3 68 ASN 68 68 68 ASN ASN C . n E 3 69 GLN 69 69 69 GLN GLN C . n E 3 70 THR 70 70 70 THR THR C . n E 3 71 LYS 71 71 71 LYS LYS C . n E 3 72 PRO 72 72 72 PRO PRO C . n E 3 73 LYS 73 73 73 LYS LYS C . n E 3 74 HIS 74 74 74 HIS HIS C . n E 3 75 VAL 75 75 75 VAL VAL C . n E 3 76 PRO 76 76 76 PRO PRO C . n E 3 77 GLY 77 77 77 GLY GLY C . n E 3 78 THR 78 78 78 THR THR C . n E 3 79 PRO 79 79 79 PRO PRO C . n E 3 80 TYR 80 80 80 TYR TYR C . n E 3 81 TRP 81 81 81 TRP TRP C . n E 3 82 VAL 82 82 82 VAL VAL C . n E 3 83 ILE 83 83 83 ILE ILE C . n E 3 84 THR 84 84 84 THR THR C . n E 3 85 ASN 85 85 85 ASN ASN C . n E 3 86 THR 86 86 86 THR THR C . n E 3 87 ASN 87 87 87 ASN ASN C . n E 3 88 THR 88 88 88 THR THR C . n E 3 89 GLY 89 89 89 GLY GLY C . n E 3 90 ARG 90 90 90 ARG ARG C . n E 3 91 LYS 91 91 91 LYS LYS C . n E 3 92 CYS 92 92 92 CYS CYS C . n E 3 93 SER 93 93 93 SER SER C . n E 3 94 MET 94 94 94 MET MET C . n E 3 95 ILE 95 95 95 ILE ILE C . n E 3 96 GLU 96 96 96 GLU GLU C . n E 3 97 HIS 97 97 97 HIS HIS C . n E 3 98 ILE 98 98 98 ILE ILE C . n E 3 99 MET 99 99 99 MET MET C . n E 3 100 GLN 100 100 100 GLN GLN C . n E 3 101 SER 101 101 101 SER SER C . n E 3 102 MET 102 102 102 MET MET C . n E 3 103 GLN 103 103 103 GLN GLN C . n E 3 104 PHE 104 104 104 PHE PHE C . n E 3 105 PRO 105 105 105 PRO PRO C . n E 3 106 ALA 106 106 106 ALA ALA C . n E 3 107 GLU 107 107 107 GLU GLU C . n E 3 108 LEU 108 108 108 LEU LEU C . n E 3 109 ILE 109 109 109 ILE ILE C . n E 3 110 GLU 110 110 110 GLU GLU C . n E 3 111 LYS 111 111 111 LYS LYS C . n E 3 112 VAL 112 112 112 VAL VAL C . n E 3 113 CYS 113 113 113 CYS CYS C . n E 3 114 GLY 114 114 114 GLY GLY C . n E 3 115 THR 115 115 115 THR THR C . n E 3 116 ILE 116 116 116 ILE ILE C . n F 3 1 GLY 1 1 ? ? ? F . n F 3 2 PRO 2 2 2 PRO PRO F . n F 3 3 LEU 3 3 3 LEU LEU F . n F 3 4 GLY 4 4 4 GLY GLY F . n F 3 5 SER 5 5 5 SER SER F . n F 3 6 ALA 6 6 6 ALA ALA F . n F 3 7 MET 7 7 7 MET MET F . n F 3 8 ARG 8 8 8 ARG ARG F . n F 3 9 GLU 9 9 9 GLU GLU F . n F 3 10 LEU 10 10 10 LEU LEU F . n F 3 11 LEU 11 11 11 LEU LEU F . n F 3 12 LEU 12 12 12 LEU LEU F . n F 3 13 SER 13 13 13 SER SER F . n F 3 14 ASP 14 14 14 ASP ASP F . n F 3 15 GLU 15 15 15 GLU GLU F . n F 3 16 TYR 16 16 16 TYR TYR F . n F 3 17 ALA 17 17 17 ALA ALA F . n F 3 18 GLU 18 18 18 GLU GLU F . n F 3 19 GLN 19 19 19 GLN GLN F . n F 3 20 LYS 20 20 20 LYS LYS F . n F 3 21 ARG 21 21 21 ARG ARG F . n F 3 22 ALA 22 22 22 ALA ALA F . n F 3 23 VAL 23 23 23 VAL VAL F . n F 3 24 ASN 24 24 24 ASN ASN F . n F 3 25 ARG 25 25 25 ARG ARG F . n F 3 26 PHE 26 26 26 PHE PHE F . n F 3 27 MET 27 27 27 MET MET F . n F 3 28 LEU 28 28 28 LEU LEU F . n F 3 29 LEU 29 29 29 LEU LEU F . n F 3 30 LEU 30 30 30 LEU LEU F . n F 3 31 SER 31 31 31 SER SER F . n F 3 32 THR 32 32 32 THR THR F . n F 3 33 LEU 33 33 33 LEU LEU F . n F 3 34 TYR 34 34 34 TYR TYR F . n F 3 35 SER 35 35 35 SER SER F . n F 3 36 LEU 36 36 36 LEU LEU F . n F 3 37 ASP 37 37 37 ASP ASP F . n F 3 38 ALA 38 38 38 ALA ALA F . n F 3 39 GLN 39 39 39 GLN GLN F . n F 3 40 ALA 40 40 40 ALA ALA F . n F 3 41 PHE 41 41 41 PHE PHE F . n F 3 42 ALA 42 42 42 ALA ALA F . n F 3 43 GLU 43 43 43 GLU GLU F . n F 3 44 ALA 44 44 44 ALA ALA F . n F 3 45 THR 45 45 45 THR THR F . n F 3 46 GLU 46 46 46 GLU GLU F . n F 3 47 SER 47 47 47 SER SER F . n F 3 48 LEU 48 48 48 LEU LEU F . n F 3 49 HIS 49 49 49 HIS HIS F . n F 3 50 GLY 50 50 50 GLY GLY F . n F 3 51 ARG 51 51 51 ARG ARG F . n F 3 52 THR 52 52 52 THR THR F . n F 3 53 ARG 53 53 53 ARG ARG F . n F 3 54 VAL 54 54 54 VAL VAL F . n F 3 55 TYR 55 55 55 TYR TYR F . n F 3 56 PHE 56 56 56 PHE PHE F . n F 3 57 ALA 57 57 57 ALA ALA F . n F 3 58 ALA 58 58 58 ALA ALA F . n F 3 59 ASP 59 59 59 ASP ASP F . n F 3 60 GLU 60 60 60 GLU GLU F . n F 3 61 GLN 61 61 61 GLN GLN F . n F 3 62 THR 62 62 62 THR THR F . n F 3 63 LEU 63 63 63 LEU LEU F . n F 3 64 LEU 64 64 64 LEU LEU F . n F 3 65 LYS 65 65 65 LYS LYS F . n F 3 66 ASN 66 66 66 ASN ASN F . n F 3 67 GLY 67 67 67 GLY GLY F . n F 3 68 ASN 68 68 68 ASN ASN F . n F 3 69 GLN 69 69 69 GLN GLN F . n F 3 70 THR 70 70 70 THR THR F . n F 3 71 LYS 71 71 71 LYS LYS F . n F 3 72 PRO 72 72 72 PRO PRO F . n F 3 73 LYS 73 73 73 LYS LYS F . n F 3 74 HIS 74 74 74 HIS HIS F . n F 3 75 VAL 75 75 75 VAL VAL F . n F 3 76 PRO 76 76 76 PRO PRO F . n F 3 77 GLY 77 77 77 GLY GLY F . n F 3 78 THR 78 78 78 THR THR F . n F 3 79 PRO 79 79 79 PRO PRO F . n F 3 80 TYR 80 80 80 TYR TYR F . n F 3 81 TRP 81 81 81 TRP TRP F . n F 3 82 VAL 82 82 82 VAL VAL F . n F 3 83 ILE 83 83 83 ILE ILE F . n F 3 84 THR 84 84 84 THR THR F . n F 3 85 ASN 85 85 85 ASN ASN F . n F 3 86 THR 86 86 86 THR THR F . n F 3 87 ASN 87 87 87 ASN ASN F . n F 3 88 THR 88 88 88 THR THR F . n F 3 89 GLY 89 89 89 GLY GLY F . n F 3 90 ARG 90 90 90 ARG ARG F . n F 3 91 LYS 91 91 91 LYS LYS F . n F 3 92 CYS 92 92 92 CYS CYS F . n F 3 93 SER 93 93 93 SER SER F . n F 3 94 MET 94 94 94 MET MET F . n F 3 95 ILE 95 95 95 ILE ILE F . n F 3 96 GLU 96 96 96 GLU GLU F . n F 3 97 HIS 97 97 97 HIS HIS F . n F 3 98 ILE 98 98 98 ILE ILE F . n F 3 99 MET 99 99 99 MET MET F . n F 3 100 GLN 100 100 100 GLN GLN F . n F 3 101 SER 101 101 101 SER SER F . n F 3 102 MET 102 102 102 MET MET F . n F 3 103 GLN 103 103 103 GLN GLN F . n F 3 104 PHE 104 104 104 PHE PHE F . n F 3 105 PRO 105 105 105 PRO PRO F . n F 3 106 ALA 106 106 106 ALA ALA F . n F 3 107 GLU 107 107 107 GLU GLU F . n F 3 108 LEU 108 108 108 LEU LEU F . n F 3 109 ILE 109 109 109 ILE ILE F . n F 3 110 GLU 110 110 110 GLU GLU F . n F 3 111 LYS 111 111 111 LYS LYS F . n F 3 112 VAL 112 112 112 VAL VAL F . n F 3 113 CYS 113 113 113 CYS CYS F . n F 3 114 GLY 114 114 114 GLY GLY F . n F 3 115 THR 115 115 115 THR THR F . n F 3 116 ILE 116 116 116 ILE ILE F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 4 4 HOH HOH A . G 4 HOH 2 43 43 HOH HOH A . G 4 HOH 3 49 49 HOH HOH A . G 4 HOH 4 89 89 HOH HOH A . G 4 HOH 5 94 94 HOH HOH A . G 4 HOH 6 99 99 HOH HOH A . G 4 HOH 7 100 100 HOH HOH A . G 4 HOH 8 102 102 HOH HOH A . G 4 HOH 9 115 115 HOH HOH A . H 4 HOH 1 1 1 HOH HOH B . H 4 HOH 2 9 9 HOH HOH B . H 4 HOH 3 31 31 HOH HOH B . H 4 HOH 4 37 37 HOH HOH B . H 4 HOH 5 62 62 HOH HOH B . H 4 HOH 6 92 92 HOH HOH B . H 4 HOH 7 111 111 HOH HOH B . H 4 HOH 8 112 112 HOH HOH B . H 4 HOH 9 123 123 HOH HOH B . I 4 HOH 1 5 5 HOH HOH D . I 4 HOH 2 19 19 HOH HOH D . I 4 HOH 3 23 23 HOH HOH D . I 4 HOH 4 34 34 HOH HOH D . I 4 HOH 5 44 44 HOH HOH D . I 4 HOH 6 46 46 HOH HOH D . I 4 HOH 7 68 68 HOH HOH D . I 4 HOH 8 69 69 HOH HOH D . I 4 HOH 9 75 75 HOH HOH D . I 4 HOH 10 78 78 HOH HOH D . I 4 HOH 11 83 83 HOH HOH D . I 4 HOH 12 104 104 HOH HOH D . J 4 HOH 1 24 24 HOH HOH E . J 4 HOH 2 26 26 HOH HOH E . J 4 HOH 3 29 29 HOH HOH E . J 4 HOH 4 30 30 HOH HOH E . J 4 HOH 5 33 33 HOH HOH E . J 4 HOH 6 47 47 HOH HOH E . J 4 HOH 7 48 48 HOH HOH E . J 4 HOH 8 67 67 HOH HOH E . J 4 HOH 9 90 90 HOH HOH E . J 4 HOH 10 101 101 HOH HOH E . J 4 HOH 11 116 116 HOH HOH E . J 4 HOH 12 121 121 HOH HOH E . J 4 HOH 13 128 128 HOH HOH E . K 4 HOH 1 117 3 HOH HOH C . K 4 HOH 2 118 6 HOH HOH C . K 4 HOH 3 119 8 HOH HOH C . K 4 HOH 4 120 10 HOH HOH C . K 4 HOH 5 121 11 HOH HOH C . K 4 HOH 6 122 12 HOH HOH C . K 4 HOH 7 123 13 HOH HOH C . K 4 HOH 8 124 15 HOH HOH C . K 4 HOH 9 125 16 HOH HOH C . K 4 HOH 10 126 18 HOH HOH C . K 4 HOH 11 127 21 HOH HOH C . K 4 HOH 12 128 27 HOH HOH C . K 4 HOH 13 129 32 HOH HOH C . K 4 HOH 14 130 36 HOH HOH C . K 4 HOH 15 131 38 HOH HOH C . K 4 HOH 16 132 39 HOH HOH C . K 4 HOH 17 133 42 HOH HOH C . K 4 HOH 18 134 45 HOH HOH C . K 4 HOH 19 135 51 HOH HOH C . K 4 HOH 20 136 52 HOH HOH C . K 4 HOH 21 137 53 HOH HOH C . K 4 HOH 22 138 54 HOH HOH C . K 4 HOH 23 139 56 HOH HOH C . K 4 HOH 24 140 57 HOH HOH C . K 4 HOH 25 141 59 HOH HOH C . K 4 HOH 26 142 60 HOH HOH C . K 4 HOH 27 143 61 HOH HOH C . K 4 HOH 28 144 65 HOH HOH C . K 4 HOH 29 145 70 HOH HOH C . K 4 HOH 30 146 72 HOH HOH C . K 4 HOH 31 147 74 HOH HOH C . K 4 HOH 32 148 79 HOH HOH C . K 4 HOH 33 149 80 HOH HOH C . K 4 HOH 34 150 82 HOH HOH C . K 4 HOH 35 151 84 HOH HOH C . K 4 HOH 36 152 85 HOH HOH C . K 4 HOH 37 153 87 HOH HOH C . K 4 HOH 38 154 88 HOH HOH C . K 4 HOH 39 155 91 HOH HOH C . K 4 HOH 40 156 95 HOH HOH C . K 4 HOH 41 157 97 HOH HOH C . K 4 HOH 42 158 103 HOH HOH C . K 4 HOH 43 159 105 HOH HOH C . K 4 HOH 44 160 106 HOH HOH C . K 4 HOH 45 161 108 HOH HOH C . K 4 HOH 46 162 109 HOH HOH C . K 4 HOH 47 163 110 HOH HOH C . K 4 HOH 48 164 113 HOH HOH C . K 4 HOH 49 165 114 HOH HOH C . K 4 HOH 50 166 117 HOH HOH C . K 4 HOH 51 167 118 HOH HOH C . K 4 HOH 52 168 119 HOH HOH C . K 4 HOH 53 169 120 HOH HOH C . K 4 HOH 54 170 122 HOH HOH C . K 4 HOH 55 171 124 HOH HOH C . K 4 HOH 56 172 126 HOH HOH C . K 4 HOH 57 173 127 HOH HOH C . K 4 HOH 58 174 130 HOH HOH C . K 4 HOH 59 175 131 HOH HOH C . L 4 HOH 1 117 2 HOH HOH F . L 4 HOH 2 118 7 HOH HOH F . L 4 HOH 3 119 14 HOH HOH F . L 4 HOH 4 120 17 HOH HOH F . L 4 HOH 5 121 20 HOH HOH F . L 4 HOH 6 122 22 HOH HOH F . L 4 HOH 7 123 25 HOH HOH F . L 4 HOH 8 124 28 HOH HOH F . L 4 HOH 9 125 35 HOH HOH F . L 4 HOH 10 126 40 HOH HOH F . L 4 HOH 11 127 41 HOH HOH F . L 4 HOH 12 128 50 HOH HOH F . L 4 HOH 13 129 55 HOH HOH F . L 4 HOH 14 130 58 HOH HOH F . L 4 HOH 15 131 63 HOH HOH F . L 4 HOH 16 132 64 HOH HOH F . L 4 HOH 17 133 66 HOH HOH F . L 4 HOH 18 134 71 HOH HOH F . L 4 HOH 19 135 73 HOH HOH F . L 4 HOH 20 136 76 HOH HOH F . L 4 HOH 21 137 77 HOH HOH F . L 4 HOH 22 138 81 HOH HOH F . L 4 HOH 23 139 86 HOH HOH F . L 4 HOH 24 140 93 HOH HOH F . L 4 HOH 25 141 96 HOH HOH F . L 4 HOH 26 142 98 HOH HOH F . L 4 HOH 27 143 107 HOH HOH F . L 4 HOH 28 144 125 HOH HOH F . L 4 HOH 29 145 129 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MLPHARE phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1IU3 _cell.length_a 152.595 _cell.length_b 152.595 _cell.length_c 119.355 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IU3 _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 # _exptl.entry_id 1IU3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 76.54 _exptl_crystal.density_Matthews 5.24 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES-Na, tri-Sodium Citrate dihydrate, Glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 HEPES-Na ? ? ? 1 2 1 'tri-Sodium Citrate dihydrate' ? ? ? 1 3 1 Glycerol ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2001-01-01 ? 2 CCD MARRESEARCH 2001-01-01 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'rotated-inclined fixed exit double crystal' 'SINGLE WAVELENGTH' x-ray 2 1 M 'rotated-inclined fixed exit double crystal' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979713 1.0 2 0.9798 1.0 3 0.9800 1.0 4 0.9742 1.0 5 0.9839 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? 0.979713 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? 0.9798,0.9800,0.9742,0.9839 # _reflns.entry_id 1IU3 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 41.33 _reflns.d_resolution_high 3.0 _reflns.number_obs 16587 _reflns.number_all 16587 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.05 _reflns_shell.percent_possible_all 85.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1IU3 _refine.ls_number_reflns_obs 16586 _refine.ls_number_reflns_all 16587 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40 _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.286 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 816 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1IU3 _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.69 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.54 _refine_analyze.Luzzati_sigma_a_free 0.82 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1816 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 2755 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 3.16095 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.0316 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.82394 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.6685 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 6 3.0 3.05 . 0.523 . . . . . . 'X-RAY DIFFRACTION' . . 6 3.05 3.11 . 0.496 . . . . . . 'X-RAY DIFFRACTION' . . 6 3.11 3.17 . 0.476 . . . . . . 'X-RAY DIFFRACTION' . . 6 3.17 3.23 . 0.376 . . . . . . 'X-RAY DIFFRACTION' . . 6 3.23 3.30 . 0.302 . . . . . . 'X-RAY DIFFRACTION' . . 6 3.30 3.38 . 0.284 . . . . . . 'X-RAY DIFFRACTION' . . # _database_PDB_matrix.entry_id 1IU3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1IU3 _struct.title 'CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IU3 _struct_keywords.pdbx_keywords 'REPLICATION INHIBITOR/DNA' _struct_keywords.text ;Protein-DNA complex, Recognition of hemimethylated DNA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, REPLICATION INHIBITOR-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SEQA_ECOLI 3 ;AMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITN TNTGRKCSMIEHIMQSMQFPAELIEKVCGTI ; 71 P36658 ? 2 PDB 1IU3 1 ? ? 1IU3 ? 3 PDB 1IU3 2 ? ? 1IU3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1IU3 C 6 ? 116 ? P36658 71 ? 181 ? 6 116 2 1 1IU3 F 6 ? 116 ? P36658 71 ? 181 ? 6 116 3 2 1IU3 A 1 ? 10 ? 1IU3 201 ? 210 ? 201 210 4 3 1IU3 B 1 ? 10 ? 1IU3 211 ? 220 ? 211 220 5 2 1IU3 D 1 ? 10 ? 1IU3 201 ? 210 ? 201 210 6 3 1IU3 E 1 ? 10 ? 1IU3 211 ? 220 ? 211 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1IU3 GLY C 1 ? UNP P36658 ? ? 'cloning artifact' 1 1 1 1IU3 PRO C 2 ? UNP P36658 ? ? 'cloning artifact' 2 2 1 1IU3 LEU C 3 ? UNP P36658 ? ? 'cloning artifact' 3 3 1 1IU3 GLY C 4 ? UNP P36658 ? ? 'cloning artifact' 4 4 1 1IU3 SER C 5 ? UNP P36658 ? ? 'cloning artifact' 5 5 2 1IU3 GLY F 1 ? UNP P36658 ? ? 'cloning artifact' 1 6 2 1IU3 PRO F 2 ? UNP P36658 ? ? 'cloning artifact' 2 7 2 1IU3 LEU F 3 ? UNP P36658 ? ? 'cloning artifact' 3 8 2 1IU3 GLY F 4 ? UNP P36658 ? ? 'cloning artifact' 4 9 2 1IU3 SER F 5 ? UNP P36658 ? ? 'cloning artifact' 5 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY E 4 ? SER E 13 ? GLY C 4 SER C 13 1 ? 10 HELX_P HELX_P2 2 SER E 13 ? GLN E 19 ? SER C 13 GLN C 19 1 ? 7 HELX_P HELX_P3 3 ARG E 21 ? ASP E 37 ? ARG C 21 ASP C 37 1 ? 17 HELX_P HELX_P4 4 ASP E 37 ? SER E 47 ? ASP C 37 SER C 47 1 ? 11 HELX_P HELX_P5 5 ASP E 59 ? ASN E 66 ? ASP C 59 ASN C 66 1 ? 8 HELX_P HELX_P6 6 ASN E 87 ? MET E 102 ? ASN C 87 MET C 102 1 ? 16 HELX_P HELX_P7 7 PRO E 105 ? ILE E 116 ? PRO C 105 ILE C 116 1 ? 12 HELX_P HELX_P8 8 GLY F 4 ? SER F 13 ? GLY F 4 SER F 13 1 ? 10 HELX_P HELX_P9 9 SER F 13 ? GLN F 19 ? SER F 13 GLN F 19 1 ? 7 HELX_P HELX_P10 10 ARG F 21 ? ASP F 37 ? ARG F 21 ASP F 37 1 ? 17 HELX_P HELX_P11 11 ASP F 37 ? SER F 47 ? ASP F 37 SER F 47 1 ? 11 HELX_P HELX_P12 12 ASP F 59 ? ASN F 66 ? ASP F 59 ASN F 66 1 ? 8 HELX_P HELX_P13 13 ASN F 87 ? SER F 101 ? ASN F 87 SER F 101 1 ? 15 HELX_P HELX_P14 14 PRO F 105 ? ILE F 116 ? PRO F 105 ILE F 116 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 202 B DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 202 B DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 203 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 203 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 203 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 204 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 204 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 204 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 205 B DT 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 205 B DT 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 206 B DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 206 B DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 207 B DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 207 B DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 207 B DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 208 B DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 208 B DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 208 B DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 209 B DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 209 B DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 210 B DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 210 B DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O2 ? ? ? 1_555 B DT 10 N3 ? ? B DT 219 B DT 220 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 9 N3 ? ? D DA 201 E DT 219 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog25 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 9 N3 ? ? D DA 202 E DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 9 O4 ? ? D DA 202 E DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 7 N4 ? ? D DG 203 E DC 217 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog28 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 8 N3 ? ? D DG 203 E DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 8 O2 ? ? D DG 203 E DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 8 N4 ? ? D DG 203 E DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? D DG 204 E DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? D DG 204 E DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? D DG 204 E DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 6 N3 ? ? D DA 205 E DT 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 6 O4 ? ? D DA 205 E DT 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 5 N1 ? ? D DT 206 E DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 5 N6 ? ? D DT 206 E DA 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? D DC 207 E DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? D DC 207 E DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? D DC 207 E DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? D DC 208 E DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? D DC 208 E DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? D DC 208 E DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 2 N3 ? ? D DA 209 E DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 2 O4 ? ? D DA 209 E DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 1 N3 ? ? D DA 210 E DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 1 O4 ? ? D DA 210 E DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D DT 9 O2 ? ? ? 1_555 D DT 10 N3 ? ? E DT 219 E DT 220 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE E 56 ? ALA E 57 ? PHE C 56 ALA C 57 A 2 TRP E 81 ? VAL E 82 ? TRP C 81 VAL C 82 B 1 PHE F 56 ? ALA F 57 ? PHE F 56 ALA F 57 B 2 TRP F 81 ? VAL F 82 ? TRP F 81 VAL F 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA E 57 ? N ALA C 57 O TRP E 81 ? O TRP C 81 B 1 2 N ALA F 57 ? N ALA F 57 O TRP F 81 ? O TRP F 81 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O F ASN 68 ? ? O F HOH 119 ? ? 2.10 2 1 CB C CYS 113 ? ? O C HOH 174 ? ? 2.16 3 1 N3 E DG 213 ? ? O E HOH 101 ? ? 2.17 4 1 O C GLY 77 ? ? O C HOH 144 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N3 D DA 201 ? ? 1_555 N3 D DA 201 ? ? 10_665 1.03 2 1 N3 D DA 201 ? ? 1_555 C4 D DA 201 ? ? 10_665 2.05 3 1 C2 D DA 201 ? ? 1_555 N3 D DA 201 ? ? 10_665 2.08 4 1 "C1'" D DA 201 ? ? 1_555 N9 D DA 201 ? ? 10_665 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 204 ? ? "C3'" A DG 204 ? ? 1.358 1.419 -0.061 0.006 N 2 1 N3 A DG 204 ? ? C4 A DG 204 ? ? 1.297 1.350 -0.053 0.007 N 3 1 C5 A DG 204 ? ? N7 A DG 204 ? ? 1.343 1.388 -0.045 0.006 N 4 1 C8 A DG 204 ? ? N9 A DG 204 ? ? 1.329 1.374 -0.045 0.007 N 5 1 N9 A DG 204 ? ? C4 A DG 204 ? ? 1.317 1.375 -0.058 0.008 N 6 1 "O3'" B DT 211 ? ? P B DT 212 ? ? 1.684 1.607 0.077 0.012 Y 7 1 N1 B DA 215 ? ? C2 B DA 215 ? ? 1.281 1.339 -0.058 0.009 N 8 1 CB C SER 5 ? ? OG C SER 5 ? ? 1.514 1.418 0.096 0.013 N 9 1 CG C GLU 9 ? ? CD C GLU 9 ? ? 1.625 1.515 0.110 0.015 N 10 1 CG C GLU 15 ? ? CD C GLU 15 ? ? 1.605 1.515 0.090 0.015 N 11 1 CE1 C TYR 16 ? ? CZ C TYR 16 ? ? 1.297 1.381 -0.084 0.013 N 12 1 CZ C TYR 16 ? ? CE2 C TYR 16 ? ? 1.256 1.381 -0.125 0.013 N 13 1 CB C VAL 23 ? ? CG2 C VAL 23 ? ? 1.348 1.524 -0.176 0.021 N 14 1 CG C GLU 43 ? ? CD C GLU 43 ? ? 1.610 1.515 0.095 0.015 N 15 1 CA C VAL 75 ? ? CB C VAL 75 ? ? 1.792 1.543 0.249 0.021 N 16 1 CB C PRO 76 ? ? CG C PRO 76 ? ? 1.803 1.495 0.308 0.050 N 17 1 CB C TYR 80 ? ? CG C TYR 80 ? ? 1.415 1.512 -0.097 0.015 N 18 1 CB C CYS 92 ? ? SG C CYS 92 ? ? 1.686 1.812 -0.126 0.016 N 19 1 CA C ALA 106 ? ? CB C ALA 106 ? ? 1.388 1.520 -0.132 0.021 N 20 1 CA F VAL 75 ? ? CB F VAL 75 ? ? 1.675 1.543 0.132 0.021 N 21 1 CA F PRO 76 ? ? C F PRO 76 ? ? 1.654 1.524 0.130 0.020 N 22 1 CB F CYS 113 ? ? SG F CYS 113 ? ? 1.974 1.818 0.156 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DA 202 ? ? P A DA 202 ? ? OP1 A DA 202 ? ? 99.12 105.70 -6.58 0.90 N 2 1 "C5'" A DA 202 ? ? "C4'" A DA 202 ? ? "C3'" A DA 202 ? ? 103.20 114.10 -10.90 1.80 N 3 1 "O5'" A DG 203 ? ? P A DG 203 ? ? OP1 A DG 203 ? ? 122.12 110.70 11.42 1.20 N 4 1 "O5'" A DG 203 ? ? P A DG 203 ? ? OP2 A DG 203 ? ? 93.42 105.70 -12.28 0.90 N 5 1 "O5'" A DG 204 ? ? P A DG 204 ? ? OP2 A DG 204 ? ? 99.67 105.70 -6.03 0.90 N 6 1 "O3'" A DG 204 ? ? P A DA 205 ? ? OP1 A DA 205 ? ? 118.40 110.50 7.90 1.10 Y 7 1 "C5'" A DA 205 ? ? "C4'" A DA 205 ? ? "C3'" A DA 205 ? ? 98.34 114.10 -15.76 1.80 N 8 1 N1 B DT 211 ? ? "C1'" B DT 211 ? ? "C2'" B DT 211 ? ? 124.06 114.30 9.76 1.40 N 9 1 "O4'" B DT 211 ? ? "C1'" B DT 211 ? ? N1 B DT 211 ? ? 111.77 108.30 3.47 0.30 N 10 1 "O5'" B DT 212 ? ? P B DT 212 ? ? OP1 B DT 212 ? ? 97.56 105.70 -8.14 0.90 N 11 1 "O3'" B DT 212 ? ? P B DG 213 ? ? OP1 B DG 213 ? ? 118.97 110.50 8.47 1.10 Y 12 1 "C3'" B DC 217 ? ? "C2'" B DC 217 ? ? "C1'" B DC 217 ? ? 97.53 102.40 -4.87 0.80 N 13 1 "O4'" B DC 217 ? ? "C1'" B DC 217 ? ? N1 B DC 217 ? ? 110.27 108.30 1.97 0.30 N 14 1 "C3'" B DC 218 ? ? "C2'" B DC 218 ? ? "C1'" B DC 218 ? ? 96.50 102.40 -5.90 0.80 N 15 1 N9 D DA 201 ? ? "C1'" D DA 201 ? ? "C2'" D DA 201 ? ? 125.89 114.30 11.59 1.40 N 16 1 "O4'" D DA 201 ? ? "C1'" D DA 201 ? ? N9 D DA 201 ? ? 111.20 108.30 2.90 0.30 N 17 1 "O5'" D DA 202 ? ? P D DA 202 ? ? OP2 D DA 202 ? ? 94.78 105.70 -10.92 0.90 N 18 1 "O5'" E DT 212 ? ? P E DT 212 ? ? OP1 E DT 212 ? ? 99.72 105.70 -5.98 0.90 N 19 1 CA C LEU 11 ? ? CB C LEU 11 ? ? CG C LEU 11 ? ? 132.38 115.30 17.08 2.30 N 20 1 CB C LEU 11 ? ? CG C LEU 11 ? ? CD2 C LEU 11 ? ? 98.59 111.00 -12.41 1.70 N 21 1 CB C VAL 23 ? ? CA C VAL 23 ? ? C C VAL 23 ? ? 97.11 111.40 -14.29 1.90 N 22 1 NE C ARG 25 ? ? CZ C ARG 25 ? ? NH1 C ARG 25 ? ? 115.16 120.30 -5.14 0.50 N 23 1 NE C ARG 25 ? ? CZ C ARG 25 ? ? NH2 C ARG 25 ? ? 123.90 120.30 3.60 0.50 N 24 1 N C ASN 68 ? ? CA C ASN 68 ? ? C C ASN 68 ? ? 127.72 111.00 16.72 2.70 N 25 1 N C GLN 69 ? ? CA C GLN 69 ? ? C C GLN 69 ? ? 93.03 111.00 -17.97 2.70 N 26 1 N C THR 70 ? ? CA C THR 70 ? ? C C THR 70 ? ? 88.56 111.00 -22.44 2.70 N 27 1 C C THR 70 ? ? N C LYS 71 ? ? CA C LYS 71 ? ? 105.53 121.70 -16.17 2.50 Y 28 1 CA C LYS 73 ? ? C C LYS 73 ? ? O C LYS 73 ? ? 133.75 120.10 13.65 2.10 N 29 1 CA C LYS 73 ? ? C C LYS 73 ? ? N C HIS 74 ? ? 100.36 117.20 -16.84 2.20 Y 30 1 N C HIS 74 ? ? CA C HIS 74 ? ? C C HIS 74 ? ? 130.09 111.00 19.09 2.70 N 31 1 C C HIS 74 ? ? N C VAL 75 ? ? CA C VAL 75 ? ? 105.23 121.70 -16.47 2.50 Y 32 1 N C VAL 75 ? ? CA C VAL 75 ? ? C C VAL 75 ? ? 91.26 111.00 -19.74 2.70 N 33 1 C C VAL 75 ? ? N C PRO 76 ? ? CA C PRO 76 ? ? 102.07 119.30 -17.23 1.50 Y 34 1 C C VAL 75 ? ? N C PRO 76 ? ? CD C PRO 76 ? ? 97.30 128.40 -31.10 2.10 Y 35 1 N C PRO 76 ? ? CA C PRO 76 ? ? CB C PRO 76 ? ? 95.46 103.30 -7.84 1.20 N 36 1 CB C VAL 82 ? ? CA C VAL 82 ? ? C C VAL 82 ? ? 99.60 111.40 -11.80 1.90 N 37 1 NE F ARG 21 ? ? CZ F ARG 21 ? ? NH2 F ARG 21 ? ? 116.95 120.30 -3.35 0.50 N 38 1 N F ASN 68 ? ? CA F ASN 68 ? ? C F ASN 68 ? ? 129.17 111.00 18.17 2.70 N 39 1 N F THR 70 ? ? CA F THR 70 ? ? C F THR 70 ? ? 90.26 111.00 -20.74 2.70 N 40 1 C F VAL 75 ? ? N F PRO 76 ? ? CA F PRO 76 ? ? 107.73 119.30 -11.57 1.50 Y 41 1 CB F VAL 82 ? ? CA F VAL 82 ? ? C F VAL 82 ? ? 98.08 111.40 -13.32 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER C 13 ? ? -34.25 148.60 2 1 GLN C 19 ? ? -34.34 133.07 3 1 LYS C 65 ? ? -60.07 -76.24 4 1 PRO C 72 ? ? -25.37 103.63 5 1 VAL C 75 ? ? -177.12 139.49 6 1 THR C 78 ? ? -128.37 -156.22 7 1 ASN C 85 ? ? -68.57 81.59 8 1 CYS C 92 ? ? -66.53 -73.27 9 1 GLN F 19 ? ? -32.53 126.24 10 1 LEU F 36 ? ? -79.86 -73.05 11 1 ALA F 57 ? ? 178.39 166.29 12 1 LYS F 65 ? ? -58.86 -85.95 13 1 PRO F 72 ? ? -47.13 98.14 14 1 HIS F 74 ? ? -43.97 -86.20 15 1 PRO F 76 ? ? -51.96 -74.10 16 1 THR F 78 ? ? -121.78 -148.00 17 1 GLN F 103 ? ? 73.45 48.27 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 205 ? ? 0.068 'SIDE CHAIN' 2 1 DA A 210 ? ? 0.053 'SIDE CHAIN' 3 1 DT B 211 ? ? 0.133 'SIDE CHAIN' 4 1 DC B 217 ? ? 0.080 'SIDE CHAIN' 5 1 DT B 220 ? ? 0.084 'SIDE CHAIN' 6 1 DA D 205 ? ? 0.104 'SIDE CHAIN' 7 1 DA D 210 ? ? 0.055 'SIDE CHAIN' 8 1 DT E 211 ? ? 0.080 'SIDE CHAIN' 9 1 DT E 216 ? ? 0.109 'SIDE CHAIN' 10 1 DT E 219 ? ? 0.092 'SIDE CHAIN' 11 1 TYR C 80 ? ? 0.083 'SIDE CHAIN' # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id VAL _pdbx_validate_main_chain_plane.auth_asym_id C _pdbx_validate_main_chain_plane.auth_seq_id 75 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 14.64 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY 1 ? E GLY 1 2 1 Y 1 F GLY 1 ? F GLY 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1IU3 'double helix' 1IU3 'b-form double helix' 1IU3 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 9 1_555 0.690 -0.331 0.940 3.151 -14.457 -8.852 1 A_DA202:DT219_B A 202 ? B 219 ? 20 1 1 A DG 3 1_555 B DC 8 1_555 0.617 -0.092 0.868 4.580 -11.665 -6.769 2 A_DG203:DC218_B A 203 ? B 218 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 0.689 -0.125 0.487 0.161 -12.866 9.005 3 A_DG204:DC217_B A 204 ? B 217 ? 19 1 1 A DA 5 1_555 B DT 6 1_555 0.440 -0.399 0.544 5.344 -24.006 -7.002 4 A_DA205:DT216_B A 205 ? B 216 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.153 -0.027 -0.054 4.454 2.390 3.684 5 A_DT206:DA215_B A 206 ? B 215 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.317 -0.095 -0.148 5.656 -3.474 3.288 6 A_DC207:DG214_B A 207 ? B 214 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 -0.222 -0.157 0.207 6.760 2.863 -2.084 7 A_DC208:DG213_B A 208 ? B 213 ? 19 1 1 A DA 9 1_555 B DT 2 1_555 0.027 -0.026 -0.203 4.700 -3.569 -0.346 8 A_DA209:DT212_B A 209 ? B 212 ? 20 1 1 A DA 10 1_555 B DT 1 1_555 0.476 -0.210 -0.074 -6.957 -10.493 -2.343 9 A_DA210:DT211_B A 210 ? B 211 ? 20 1 1 D DT 1 1_555 C DA 10 1_555 -0.444 0.154 0.026 4.761 -10.763 2.031 10 E_DT211:DA210_D E 211 ? D 210 ? 20 1 1 D DT 2 1_555 C DA 9 1_555 -0.187 0.156 0.144 -7.334 -8.291 2.457 11 E_DT212:DA209_D E 212 ? D 209 ? 20 1 1 D DG 3 1_555 C DC 8 1_555 0.178 -0.304 0.514 -2.752 -3.429 -7.103 12 E_DG213:DC208_D E 213 ? D 208 ? 19 1 1 D DG 4 1_555 C DC 7 1_555 0.175 0.025 -0.007 -6.690 3.430 13.256 13 E_DG214:DC207_D E 214 ? D 207 ? 19 1 1 D DA 5 1_555 C DT 6 1_555 -0.278 -0.335 0.185 4.159 -5.424 -1.022 14 E_DA215:DT206_D E 215 ? D 206 ? 20 1 1 D DT 6 1_555 C DA 5 1_555 -0.836 -0.280 0.811 -10.871 -22.398 -6.802 15 E_DT216:DA205_D E 216 ? D 205 ? 20 1 1 D DC 7 1_555 C DG 4 1_555 -0.358 0.060 0.503 -13.826 -4.739 7.267 16 E_DC217:DG204_D E 217 ? D 204 ? 19 1 1 D DC 8 1_555 C DG 3 1_555 -0.864 -0.007 0.293 -7.355 -12.895 -5.023 17 E_DC218:DG203_D E 218 ? D 203 ? 19 1 1 D DT 9 1_555 C DA 2 1_555 0.032 -0.030 0.520 -12.926 -7.617 -5.439 18 E_DT219:DA202_D E 219 ? D 202 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 9 1_555 A DG 3 1_555 B DC 8 1_555 0.263 -1.047 3.120 4.135 -4.388 34.864 -1.090 0.164 3.233 -7.256 -6.838 35.365 1 AA_DA202DG203:DC218DT219_BB A 202 ? B 219 ? A 203 ? B 218 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 1.456 0.405 3.391 8.839 5.055 37.454 -0.068 -1.008 3.652 7.700 -13.464 38.765 2 AA_DG203DG204:DC217DC218_BB A 203 ? B 218 ? A 204 ? B 217 ? 1 A DG 4 1_555 B DC 7 1_555 A DA 5 1_555 B DT 6 1_555 -1.867 1.059 3.198 -4.662 -7.692 34.231 2.858 2.399 3.115 -12.797 7.756 35.359 3 AA_DG204DA205:DT216DC217_BB A 204 ? B 217 ? A 205 ? B 216 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 1.100 0.737 3.412 3.735 -17.913 40.434 2.685 -1.105 2.935 -24.461 -5.100 44.224 4 AA_DA205DT206:DA215DT216_BB A 205 ? B 216 ? A 206 ? B 215 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 0.031 0.052 3.253 1.523 3.592 31.864 -0.548 0.215 3.237 6.513 -2.761 32.095 5 AA_DT206DC207:DG214DA215_BB A 206 ? B 215 ? A 207 ? B 214 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 0.300 -0.223 3.288 -2.962 2.527 35.041 -0.743 -0.934 3.230 4.181 4.901 35.249 6 AA_DC207DC208:DG213DG214_BB A 207 ? B 214 ? A 208 ? B 213 ? 1 A DC 8 1_555 B DG 3 1_555 A DA 9 1_555 B DT 2 1_555 -0.371 -0.491 3.279 3.355 5.029 39.292 -1.301 0.931 3.154 7.425 -4.953 39.737 7 AA_DC208DA209:DT212DG213_BB A 208 ? B 213 ? A 209 ? B 212 ? 1 A DA 9 1_555 B DT 2 1_555 A DA 10 1_555 B DT 1 1_555 -0.196 -0.357 3.471 -4.435 10.523 39.522 -1.714 -0.228 3.278 15.182 6.398 41.075 8 AA_DA209DA210:DT211DT212_BB A 209 ? B 212 ? A 210 ? B 211 ? 1 A DA 10 1_555 B DT 1 1_555 D DT 1 1_555 C DA 10 1_555 0.293 -1.412 2.902 -0.240 -1.434 27.775 -2.628 -0.662 2.968 -2.984 0.500 27.812 9 AE_DA210DT211:DA210DT211_DB A 210 ? B 211 ? E 211 ? D 210 ? 1 D DT 1 1_555 C DA 10 1_555 D DT 2 1_555 C DA 9 1_555 0.025 -0.379 3.505 1.090 5.637 38.600 -1.291 0.102 3.417 8.469 -1.638 39.009 10 EE_DT211DT212:DA209DA210_DD E 211 ? D 210 ? E 212 ? D 209 ? 1 D DT 2 1_555 C DA 9 1_555 D DG 3 1_555 C DC 8 1_555 0.160 -0.381 3.141 -2.481 3.558 43.093 -0.847 -0.447 3.088 4.829 3.368 43.300 11 EE_DT212DG213:DC208DA209_DD E 212 ? D 209 ? E 213 ? D 208 ? 1 D DG 3 1_555 C DC 8 1_555 D DG 4 1_555 C DC 7 1_555 0.307 -0.414 3.445 2.591 -0.512 38.809 -0.556 -0.128 3.462 -0.769 -3.894 38.895 12 EE_DG213DG214:DC207DC208_DD E 213 ? D 208 ? E 214 ? D 207 ? 1 D DG 4 1_555 C DC 7 1_555 D DA 5 1_555 C DT 6 1_555 -0.630 0.090 3.003 0.103 3.211 23.841 -0.734 1.541 2.986 7.727 -0.247 24.054 13 EE_DG214DA215:DT206DC207_DD E 214 ? D 207 ? E 215 ? D 206 ? 1 D DA 5 1_555 C DT 6 1_555 D DT 6 1_555 C DA 5 1_555 -1.012 0.213 3.797 -6.231 -15.540 38.598 2.206 0.649 3.575 -22.277 8.932 41.945 14 EE_DA215DT216:DA205DT206_DD E 215 ? D 206 ? E 216 ? D 205 ? 1 D DT 6 1_555 C DA 5 1_555 D DC 7 1_555 C DG 4 1_555 1.431 0.785 3.513 4.446 -6.301 42.196 1.752 -1.480 3.493 -8.665 -6.114 42.863 15 EE_DT216DC217:DG204DA205_DD E 216 ? D 205 ? E 217 ? D 204 ? 1 D DC 7 1_555 C DG 4 1_555 D DC 8 1_555 C DG 3 1_555 -1.667 0.265 2.912 -5.568 1.578 31.058 0.212 2.096 3.165 2.916 10.287 31.580 16 EE_DC217DC218:DG203DG204_DD E 217 ? D 204 ? E 218 ? D 203 ? 1 D DC 8 1_555 C DG 3 1_555 D DT 9 1_555 C DA 2 1_555 -0.176 -0.626 3.377 -2.369 3.931 38.282 -1.447 -0.034 3.303 5.968 3.597 38.546 17 EE_DC218DT219:DA202DG203_DD E 218 ? D 203 ? E 219 ? D 202 ? # _atom_sites.entry_id 1IU3 _atom_sites.fract_transf_matrix[1][1] 0.006553 _atom_sites.fract_transf_matrix[1][2] 0.003784 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007567 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_