HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-MAR-02 1IV0 TITLE SOLUTION STRUCTURE OF THE YQGF-FAMILY PROTEIN (N-TERMINAL FRAGMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HYPOTHETICAL PROTEIN, RNASEH-LIKE, YQGF, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.INOUE,T.KIGAWA,S.KURAMITSU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1IV0 1 REMARK REVDAT 3 23-FEB-22 1IV0 1 REMARK REVDAT 2 24-FEB-09 1IV0 1 VERSN REVDAT 1 07-OCT-03 1IV0 0 JRNL AUTH M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE YQGF-FAMILY PROTEIN (N-TERMINAL JRNL TITL 2 FRAGMENT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.8, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IV0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000005301. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 328 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN U-15N, 13C; 20MM REMARK 210 SODIUM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 90% H2O, 10% D2O; 1MM REMARK 210 PROTEIN U-15N; 20MM SODIUM REMARK 210 PHOSPHATE BUFFER; 100MM NACL; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 34.65 178.16 REMARK 500 1 ALA A 11 -48.04 168.53 REMARK 500 1 LEU A 24 -70.98 -64.52 REMARK 500 1 ALA A 25 -42.17 170.66 REMARK 500 1 SER A 26 137.66 60.19 REMARK 500 1 ARG A 28 -43.12 179.17 REMARK 500 1 TYR A 30 150.05 179.96 REMARK 500 1 LYS A 34 -149.79 -137.23 REMARK 500 1 LYS A 54 130.97 178.19 REMARK 500 1 LEU A 61 126.99 62.00 REMARK 500 1 THR A 63 126.70 69.19 REMARK 500 1 ASP A 64 138.37 178.48 REMARK 500 1 GLU A 67 145.81 61.92 REMARK 500 1 SER A 68 -150.73 -162.60 REMARK 500 1 ALA A 71 135.38 60.76 REMARK 500 1 LYS A 73 49.38 -86.82 REMARK 500 1 ASP A 92 -149.88 -71.10 REMARK 500 1 THR A 96 129.30 -176.04 REMARK 500 2 GLU A 10 105.79 -178.65 REMARK 500 2 ALA A 25 135.26 76.52 REMARK 500 2 SER A 26 131.14 179.76 REMARK 500 2 ARG A 28 -44.12 -155.33 REMARK 500 2 TYR A 30 140.92 -179.72 REMARK 500 2 LYS A 34 -153.21 -150.49 REMARK 500 2 THR A 35 -158.60 -86.78 REMARK 500 2 LYS A 54 127.05 -178.30 REMARK 500 2 ASP A 64 -170.75 45.35 REMARK 500 2 ALA A 71 -135.10 53.20 REMARK 500 2 LYS A 73 31.87 -158.79 REMARK 500 2 ASP A 92 36.20 -174.35 REMARK 500 2 ARG A 94 37.27 -156.55 REMARK 500 2 PHE A 95 131.46 60.34 REMARK 500 3 LEU A 24 127.29 61.80 REMARK 500 3 SER A 26 137.41 66.71 REMARK 500 3 TYR A 30 150.47 179.79 REMARK 500 3 LYS A 34 -120.30 -128.05 REMARK 500 3 LEU A 36 -68.83 0.08 REMARK 500 3 THR A 63 46.11 -82.20 REMARK 500 3 LEU A 65 46.69 -80.53 REMARK 500 3 LYS A 66 31.54 -95.63 REMARK 500 3 SER A 68 -46.76 -177.79 REMARK 500 3 GLN A 70 134.50 -171.34 REMARK 500 3 LYS A 73 28.91 -154.46 REMARK 500 3 ASP A 92 126.34 68.03 REMARK 500 3 THR A 96 -41.87 -165.89 REMARK 500 3 THR A 97 -54.27 72.26 REMARK 500 4 ALA A 11 -52.85 75.54 REMARK 500 4 LEU A 24 125.63 60.89 REMARK 500 4 ALA A 25 40.50 175.45 REMARK 500 4 LYS A 34 -155.41 -147.97 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001690.1 RELATED DB: TARGETDB DBREF 1IV0 A 1 98 UNP P83694 P83694_THETH 1 98 SEQRES 1 A 98 MET ARG VAL GLY ALA LEU ASP VAL GLY GLU ALA ARG ILE SEQRES 2 A 98 GLY LEU ALA VAL GLY GLU GLU GLY VAL PRO LEU ALA SER SEQRES 3 A 98 GLY ARG GLY TYR LEU VAL ARG LYS THR LEU GLU GLU ASP SEQRES 4 A 98 VAL GLU ALA LEU LEU ASP PHE VAL ARG ARG GLU GLY LEU SEQRES 5 A 98 GLY LYS LEU VAL VAL GLY LEU PRO LEU ARG THR ASP LEU SEQRES 6 A 98 LYS GLU SER ALA GLN ALA GLY LYS VAL LEU PRO LEU VAL SEQRES 7 A 98 GLU ALA LEU ARG ALA ARG GLY VAL GLU VAL GLU LEU TRP SEQRES 8 A 98 ASP GLU ARG PHE THR THR LYS HELIX 1 1 THR A 35 GLU A 50 1 16 HELIX 2 2 VAL A 74 ARG A 84 1 11 SHEET 1 A 5 ARG A 28 VAL A 32 0 SHEET 2 A 5 ARG A 12 GLY A 18 -1 N ILE A 13 O LEU A 31 SHEET 3 A 5 VAL A 3 VAL A 8 -1 N ALA A 5 O ALA A 16 SHEET 4 A 5 LYS A 54 GLY A 58 1 O VAL A 56 N GLY A 4 SHEET 5 A 5 GLU A 87 TRP A 91 1 O GLU A 87 N LEU A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1