HEADER HYDROLASE 27-MAR-02 1IVM TITLE SOLUTION STRUCTURE OF MOUSE LYSOZYME M COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME M; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSOZYME C, TYPE M; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21D(+) KEYWDS HYDROLASE, GLYCOSIDASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.UEDA,T.OBITA,T.IMOTO REVDAT 5 27-DEC-23 1IVM 1 REMARK REVDAT 4 23-FEB-22 1IVM 1 REMARK REVDAT 3 24-FEB-09 1IVM 1 VERSN REVDAT 2 24-JUN-03 1IVM 1 JRNL REVDAT 1 08-MAY-02 1IVM 0 JRNL AUTH T.OBITA,T.UEDA,T.IMOTO JRNL TITL SOLUTION STRUCTURE AND ACTIVITY OF MOUSE LYSOZYME M JRNL REF CELL.MOL.LIFE SCI. V. 60 176 2003 JRNL REFN ISSN 1420-682X JRNL PMID 12613666 JRNL DOI 10.1007/S000180300012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT, P. (DYANA), GUENTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IVM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000005314. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 3.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM MOUSE LYSOZYME U-15N; NON REMARK 210 -BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 3 O TYR A 38 1.44 REMARK 500 O ARG A 47 H GLN A 50 1.50 REMARK 500 O ILE A 106 H TRP A 109 1.52 REMARK 500 O TRP A 28 H ALA A 32 1.53 REMARK 500 O THR A 52 H SER A 61 1.55 REMARK 500 O ASN A 44 H ASP A 53 1.55 REMARK 500 O SER A 82 H LEU A 85 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 6 -75.27 -48.09 REMARK 500 1 ALA A 18 109.93 -52.04 REMARK 500 1 TYR A 20 168.56 -43.31 REMARK 500 1 SER A 36 62.28 158.29 REMARK 500 1 ASN A 37 -150.98 -58.70 REMARK 500 1 TYR A 38 -125.71 72.66 REMARK 500 1 ALA A 42 91.96 -57.16 REMARK 500 1 ASN A 46 104.75 -162.77 REMARK 500 1 GLN A 50 47.14 35.14 REMARK 500 1 GLN A 58 69.77 37.51 REMARK 500 1 TYR A 63 -44.61 -151.98 REMARK 500 1 CYS A 65 176.42 52.42 REMARK 500 1 ASP A 67 -51.73 -150.37 REMARK 500 1 ARG A 72 -45.61 -149.96 REMARK 500 1 ALA A 73 159.49 -40.83 REMARK 500 1 ASN A 75 100.07 -39.32 REMARK 500 1 ILE A 106 -31.59 -39.68 REMARK 500 1 ARG A 107 -38.75 -38.46 REMARK 500 1 HIS A 115 -44.21 -150.73 REMARK 500 1 ASN A 118 -57.16 -141.57 REMARK 500 1 ASN A 127 -26.62 161.27 REMARK 500 2 CYS A 6 -76.54 -55.38 REMARK 500 2 TYR A 20 177.16 -48.60 REMARK 500 2 SER A 36 60.57 159.39 REMARK 500 2 ASN A 37 -158.79 -57.64 REMARK 500 2 TYR A 38 -58.57 67.19 REMARK 500 2 ASN A 46 104.63 -162.13 REMARK 500 2 GLN A 50 56.44 34.09 REMARK 500 2 GLN A 58 74.30 37.83 REMARK 500 2 CYS A 65 159.42 59.33 REMARK 500 2 ASP A 67 -47.07 -157.04 REMARK 500 2 ARG A 72 -53.16 -149.33 REMARK 500 2 ALA A 73 156.69 -44.03 REMARK 500 2 ASN A 75 98.32 -39.93 REMARK 500 2 ASP A 87 -73.71 -90.36 REMARK 500 2 ARG A 107 -39.39 -38.31 REMARK 500 2 HIS A 115 -45.66 -149.99 REMARK 500 2 ASN A 118 -65.36 -147.75 REMARK 500 2 ASN A 127 -27.21 162.55 REMARK 500 3 CYS A 6 -74.32 -53.21 REMARK 500 3 MET A 17 -40.76 -131.06 REMARK 500 3 TYR A 20 178.60 -48.43 REMARK 500 3 SER A 36 51.18 160.29 REMARK 500 3 ASN A 37 -151.60 -61.07 REMARK 500 3 TYR A 38 -63.38 61.24 REMARK 500 3 ALA A 42 104.92 -44.91 REMARK 500 3 ASN A 46 106.07 -163.56 REMARK 500 3 GLN A 50 51.30 34.76 REMARK 500 3 GLN A 58 66.01 36.96 REMARK 500 3 TYR A 63 -37.51 -158.03 REMARK 500 REMARK 500 THIS ENTRY HAS 437 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4751 RELATED DB: BMRB REMARK 900 4751 CONTAINS THE CHEMICAL SHIFTS OF THE PROTEIN. DBREF 1IVM A 1 130 UNP P08905 LYSCM_MOUSE 19 148 SEQRES 1 A 130 LYS VAL TYR GLU ARG CYS GLU PHE ALA ARG THR LEU LYS SEQRES 2 A 130 ARG ASN GLY MET ALA GLY TYR TYR GLY VAL SER LEU ALA SEQRES 3 A 130 ASP TRP VAL CYS LEU ALA GLN HIS GLU SER ASN TYR ASN SEQRES 4 A 130 THR ARG ALA THR ASN TYR ASN ARG GLY ASP GLN SER THR SEQRES 5 A 130 ASP TYR GLY ILE PHE GLN ILE ASN SER ARG TYR TRP CYS SEQRES 6 A 130 ASN ASP GLY LYS THR PRO ARG ALA VAL ASN ALA CYS GLY SEQRES 7 A 130 ILE ASN CYS SER ALA LEU LEU GLN ASP ASP ILE THR ALA SEQRES 8 A 130 ALA ILE GLN CYS ALA LYS ARG VAL VAL ARG ASP PRO GLN SEQRES 9 A 130 GLY ILE ARG ALA TRP VAL ALA TRP ARG ALA HIS CYS GLN SEQRES 10 A 130 ASN ARG ASP LEU SER GLN TYR ILE ARG ASN CYS GLY VAL HELIX 1 1 GLU A 4 GLY A 16 1 13 HELIX 2 2 SER A 24 SER A 36 1 13 HELIX 3 3 ARG A 47 GLN A 50 5 4 HELIX 4 4 ASN A 80 LEU A 85 5 6 HELIX 5 5 ILE A 89 ARG A 101 1 13 HELIX 6 6 GLY A 105 ALA A 108 5 4 HELIX 7 7 TRP A 109 ALA A 114 1 6 HELIX 8 8 LEU A 121 ARG A 126 1 6 SHEET 1 A 2 VAL A 2 TYR A 3 0 SHEET 2 A 2 TYR A 38 ASN A 39 -1 O TYR A 38 N TYR A 3 SHEET 1 B 3 THR A 43 ASN A 46 0 SHEET 2 B 3 SER A 51 TYR A 54 -1 O ASP A 53 N ASN A 44 SHEET 3 B 3 ILE A 59 ASN A 60 -1 O ILE A 59 N TYR A 54 SSBOND 1 CYS A 6 CYS A 128 1555 1555 2.11 SSBOND 2 CYS A 30 CYS A 116 1555 1555 2.14 SSBOND 3 CYS A 65 CYS A 81 1555 1555 1.97 SSBOND 4 CYS A 77 CYS A 95 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1