HEADER STRUCTURAL PROTEIN 29-MAR-02 1IVT TITLE NMR STRUCTURES OF THE C-TERMINAL GLOBULAR DOMAIN OF HUMAN LAMIN A/C COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMIN A/C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, ALL SHEET, IG-FOLD, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR I.KRIMM,C.OSTLUND,B.GILQUIN,J.COUPRIE,P.HOSSENLOPP,J.P.MORNON,G.BONN, AUTHOR 2 J.C.COURVALIN,H.J.WORMAN,S.ZINN-JUSTIN REVDAT 5 27-DEC-23 1IVT 1 REMARK REVDAT 4 23-FEB-22 1IVT 1 REMARK REVDAT 3 24-FEB-09 1IVT 1 VERSN REVDAT 2 01-APR-03 1IVT 1 JRNL REVDAT 1 21-AUG-02 1IVT 0 JRNL AUTH I.KRIMM,C.OSTLUND,B.GILQUIN,J.COUPRIE,P.HOSSENLOPP, JRNL AUTH 2 J.P.MORNON,G.BONNE,J.C.COURVALIN,H.J.WORMAN,S.ZINN-JUSTIN JRNL TITL THE IG-LIKE STRUCTURE OF THE C-TERMINAL DOMAIN OF LAMIN A/C, JRNL TITL 2 MUTATED IN MUSCULAR DYSTROPHIES, CARDIOMYOPATHY, AND PARTIAL JRNL TITL 3 LIPODYSTROPHY. JRNL REF STRUCTURE V. 10 811 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12057196 JRNL DOI 10.1016/S0969-2126(02)00777-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IVT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000005318. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM U-15N,13C; 20MM PHOSPHATE REMARK 210 BUFFER K; 1MM U-15N; 20MM REMARK 210 PHOSPHATE BUFFER K; 1MM U-15N, REMARK 210 13C; 20MM PHOSPHATE BUFFER K REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 SER A 458 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 2 PHE A 451 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 2 SER A 458 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 4 PHE A 487 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 PHE A 487 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 4 MET A 540 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 5 SER A 458 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 5 LEU A 479 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 5 TYR A 481 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 5 TYR A 481 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 SER A 458 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 6 GLN A 468 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 6 TYR A 481 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 TYR A 481 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 7 LEU A 454 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 7 SER A 458 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 8 SER A 458 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 8 TYR A 481 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 8 TYR A 481 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 9 TYR A 481 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 9 TYR A 481 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 9 SER A 546 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 10 SER A 458 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 10 GLN A 468 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 10 TYR A 481 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 10 TYR A 481 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 12 SER A 458 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 12 TYR A 481 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 12 TYR A 481 CB - CG - CD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 13 PHE A 451 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 13 SER A 458 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 14 TYR A 481 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 14 TYR A 481 CB - CG - CD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 14 GLN A 493 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 14 TRP A 520 CA - CB - CG ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 439 6.05 -60.79 REMARK 500 1 GLU A 447 152.73 -25.41 REMARK 500 1 ASN A 459 51.49 -92.81 REMARK 500 1 SER A 463 93.71 -67.19 REMARK 500 1 ASP A 476 -153.94 -100.58 REMARK 500 1 PRO A 485 19.53 -64.30 REMARK 500 1 ALA A 491 84.42 -35.87 REMARK 500 1 TRP A 498 -163.30 -173.46 REMARK 500 1 ALA A 500 -30.01 -31.39 REMARK 500 1 SER A 507 62.97 -150.18 REMARK 500 1 PRO A 509 35.77 -94.38 REMARK 500 1 THR A 519 -163.85 164.77 REMARK 500 1 ASN A 532 -170.66 -55.82 REMARK 500 1 ARG A 545 -112.99 -112.35 REMARK 500 1 VAL A 547 68.81 82.51 REMARK 500 2 SER A 429 44.50 -102.61 REMARK 500 2 ARG A 439 7.01 -61.89 REMARK 500 2 GLU A 447 166.47 -45.92 REMARK 500 2 GLU A 448 -6.31 81.98 REMARK 500 2 ASN A 459 41.68 -88.81 REMARK 500 2 ASP A 461 102.57 -55.44 REMARK 500 2 PRO A 485 40.15 -66.74 REMARK 500 2 ALA A 491 82.19 -42.54 REMARK 500 2 TRP A 498 -157.92 -178.79 REMARK 500 2 ALA A 502 25.45 -74.66 REMARK 500 2 SER A 507 64.72 -150.67 REMARK 500 2 THR A 519 -156.97 170.89 REMARK 500 2 TRP A 520 -74.22 -133.27 REMARK 500 2 ASN A 532 -171.61 -53.31 REMARK 500 2 VAL A 538 -75.84 -114.05 REMARK 500 2 VAL A 547 43.83 -98.52 REMARK 500 2 THR A 548 -170.56 -178.46 REMARK 500 3 SER A 429 150.33 77.43 REMARK 500 3 ARG A 439 12.18 -65.24 REMARK 500 3 GLU A 447 -169.29 -65.82 REMARK 500 3 LYS A 450 -80.75 -91.57 REMARK 500 3 ASN A 459 49.98 -93.34 REMARK 500 3 MET A 464 21.64 -77.90 REMARK 500 3 ASP A 475 0.84 95.50 REMARK 500 3 PRO A 485 2.88 -51.78 REMARK 500 3 ALA A 491 86.04 -35.13 REMARK 500 3 TRP A 498 -156.84 -171.92 REMARK 500 3 PRO A 509 40.47 -92.92 REMARK 500 3 THR A 519 -160.21 180.00 REMARK 500 3 ASN A 532 -174.11 -59.49 REMARK 500 3 THR A 548 147.83 -176.38 REMARK 500 4 ARG A 439 13.37 -67.39 REMARK 500 4 GLU A 447 162.18 -37.13 REMARK 500 4 LYS A 450 -70.35 -83.33 REMARK 500 4 ASP A 461 102.11 -55.64 REMARK 500 REMARK 500 THIS ENTRY HAS 227 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 451 0.08 SIDE CHAIN REMARK 500 3 PHE A 451 0.08 SIDE CHAIN REMARK 500 3 PHE A 487 0.09 SIDE CHAIN REMARK 500 4 TYR A 481 0.07 SIDE CHAIN REMARK 500 5 PHE A 430 0.08 SIDE CHAIN REMARK 500 5 PHE A 451 0.09 SIDE CHAIN REMARK 500 5 PHE A 483 0.09 SIDE CHAIN REMARK 500 6 TYR A 481 0.09 SIDE CHAIN REMARK 500 8 ARG A 541 0.09 SIDE CHAIN REMARK 500 9 PHE A 430 0.09 SIDE CHAIN REMARK 500 9 TYR A 481 0.09 SIDE CHAIN REMARK 500 10 TYR A 481 0.09 SIDE CHAIN REMARK 500 12 PHE A 451 0.11 SIDE CHAIN REMARK 500 12 ARG A 541 0.12 SIDE CHAIN REMARK 500 13 TYR A 481 0.09 SIDE CHAIN REMARK 500 14 PHE A 451 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1IVT A 428 549 UNP P02545 LAMA_HUMAN 428 549 SEQRES 1 A 122 SER SER PHE SER GLN HIS ALA ARG THR SER GLY ARG VAL SEQRES 2 A 122 ALA VAL GLU GLU VAL ASP GLU GLU GLY LYS PHE VAL ARG SEQRES 3 A 122 LEU ARG ASN LYS SER ASN GLU ASP GLN SER MET GLY ASN SEQRES 4 A 122 TRP GLN ILE LYS ARG GLN ASN GLY ASP ASP PRO LEU LEU SEQRES 5 A 122 THR TYR ARG PHE PRO PRO LYS PHE THR LEU LYS ALA GLY SEQRES 6 A 122 GLN VAL VAL THR ILE TRP ALA ALA GLY ALA GLY ALA THR SEQRES 7 A 122 HIS SER PRO PRO THR ASP LEU VAL TRP LYS ALA GLN ASN SEQRES 8 A 122 THR TRP GLY CYS GLY ASN SER LEU ARG THR ALA LEU ILE SEQRES 9 A 122 ASN SER THR GLY GLU GLU VAL ALA MET ARG LYS LEU VAL SEQRES 10 A 122 ARG SER VAL THR VAL HELIX 1 1 SER A 463 ASN A 466 5 4 SHEET 1 A 5 SER A 431 THR A 436 0 SHEET 2 A 5 GLU A 537 VAL A 544 -1 O MET A 540 N ARG A 435 SHEET 3 A 5 SER A 525 ILE A 531 -1 N THR A 528 O ARG A 541 SHEET 4 A 5 GLN A 468 ASN A 473 -1 N GLN A 468 O ILE A 531 SHEET 5 A 5 LEU A 478 ARG A 482 -1 O TYR A 481 N ILE A 469 SHEET 1 B 4 ALA A 441 ASP A 446 0 SHEET 2 B 4 PHE A 451 ARG A 455 -1 O ARG A 455 N ALA A 441 SHEET 3 B 4 VAL A 494 ALA A 499 -1 O VAL A 495 N LEU A 454 SHEET 4 B 4 ASP A 511 TRP A 514 1 O LEU A 512 N TRP A 498 CISPEP 1 PRO A 508 PRO A 509 1 0.40 CISPEP 2 PRO A 508 PRO A 509 2 1.37 CISPEP 3 PRO A 508 PRO A 509 3 0.32 CISPEP 4 PRO A 508 PRO A 509 4 1.35 CISPEP 5 PRO A 508 PRO A 509 5 3.27 CISPEP 6 PRO A 508 PRO A 509 6 3.08 CISPEP 7 PRO A 508 PRO A 509 7 4.32 CISPEP 8 PRO A 508 PRO A 509 8 1.78 CISPEP 9 PRO A 508 PRO A 509 9 4.12 CISPEP 10 PRO A 508 PRO A 509 10 2.53 CISPEP 11 PRO A 508 PRO A 509 11 0.61 CISPEP 12 PRO A 508 PRO A 509 12 0.90 CISPEP 13 PRO A 508 PRO A 509 13 2.30 CISPEP 14 PRO A 508 PRO A 509 14 1.16 CISPEP 15 PRO A 508 PRO A 509 15 3.69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1