HEADER OXIDOREDUCTASE 04-APR-02 1IW1 TITLE CRYSTAL STRUCTURE OF A HEME OXYGENASE (HMUO) FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE COMPLEXED WITH HEME IN THE FERROUS STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME OXYGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.14.99.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMW172 KEYWDS ALPHA HELIX, BACTERIAL IRON ACQUISITION, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HIROTSU,M.UNNO,G.C.CHU,D.S.LEE,S.Y.PARK,Y.SHIRO,M.IKEDA-SAITO,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 27-DEC-23 1IW1 1 HETSYN REVDAT 4 29-JUL-20 1IW1 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 24-FEB-09 1IW1 1 VERSN REVDAT 2 27-APR-04 1IW1 1 JRNL REVDAT 1 04-APR-03 1IW1 0 JRNL AUTH S.HIROTSU,G.C.CHU,M.UNNO,D.S.LEE,T.YOSHIDA,S.Y.PARK,Y.SHIRO, JRNL AUTH 2 M.IKEDA-SAITO JRNL TITL THE CRYSTAL STRUCTURES OF THE FERRIC AND FERROUS FORMS OF JRNL TITL 2 THE HEME COMPLEX OF HMUO, A HEME OXYGENASE OF JRNL TITL 3 CORYNEBACTERIUM DIPHTHERIAE. JRNL REF J.BIOL.CHEM. V. 279 11937 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14645223 JRNL DOI 10.1074/JBC.M311631200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 105106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 407 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 202 REMARK 3 SOLVENT ATOMS : 584 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5317 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4699 ; 0.001 ; 0.021 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7234 ; 1.709 ; 2.235 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10859 ; 0.833 ; 3.120 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 3.064 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 891 ;11.668 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5921 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1091 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1381 ; 0.233 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4725 ; 0.184 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 393 ; 0.161 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.008 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.242 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 84 ; 0.226 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.114 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3117 ; 1.179 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4948 ; 1.902 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 2.724 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2286 ; 4.211 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5317 ; 1.468 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 584 ; 3.453 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5209 ; 2.538 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1IW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000005325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 98.0 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : 0.30600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, NAI, MES, PH 5.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.41850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.86500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -31.41850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 214 REMARK 465 LEU A 215 REMARK 465 MET B 301 REMARK 465 THR B 302 REMARK 465 THR B 303 REMARK 465 ALA B 304 REMARK 465 THR B 305 REMARK 465 ALA B 306 REMARK 465 MET C 601 REMARK 465 THR C 602 REMARK 465 THR C 603 REMARK 465 ALA C 604 REMARK 465 THR C 605 REMARK 465 GLY C 814 REMARK 465 LEU C 815 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 175 O HOH A 1232 2.15 REMARK 500 N GLU B 395 O HOH B 2108 2.17 REMARK 500 O HOH A 1161 O HOH A 1197 2.17 REMARK 500 O HOH C 2070 O HOH C 2163 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 86 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 474 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 686 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 -124.85 -105.83 REMARK 500 SER A 93 -173.66 -173.31 REMARK 500 SER A 138 -95.62 -124.65 REMARK 500 PHE A 163 63.58 38.72 REMARK 500 ALA A 167 -97.07 -79.93 REMARK 500 LEU B 337 -128.41 -109.20 REMARK 500 SER B 438 -91.82 -119.54 REMARK 500 LEU C 637 -129.48 -103.73 REMARK 500 ILE C 766 93.98 -68.59 REMARK 500 ALA C 767 -76.22 -64.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 HEM A 901 NA 92.5 REMARK 620 3 HEM A 901 NB 95.3 87.6 REMARK 620 4 HEM A 901 NC 102.3 165.0 88.8 REMARK 620 5 HEM A 901 ND 99.6 90.3 165.0 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 902 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 320 NE2 REMARK 620 2 HEM B 902 NA 92.4 REMARK 620 3 HEM B 902 NB 94.6 88.7 REMARK 620 4 HEM B 902 NC 97.4 169.9 88.2 REMARK 620 5 HEM B 902 ND 95.3 91.2 170.1 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 903 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 620 NE2 REMARK 620 2 HEM C 903 NA 85.6 REMARK 620 3 HEM C 903 NB 102.0 90.2 REMARK 620 4 HEM C 903 NC 102.6 171.1 91.5 REMARK 620 5 HEM C 903 ND 86.0 89.7 171.9 87.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IW0 RELATED DB: PDB REMARK 900 1IW0 CONTAINS THE SAME PROTEIN COMPLEXED WITH HEME IN FERRIC STATE REMARK 900 RELATED ID: MY_001000032.2 RELATED DB: TARGETDB DBREF 1IW1 A 1 215 UNP P71119 HMUO_CORDI 1 215 DBREF 1IW1 B 301 515 UNP P71119 HMUO_CORDI 1 215 DBREF 1IW1 C 601 815 UNP P71119 HMUO_CORDI 1 215 SEQRES 1 A 215 MET THR THR ALA THR ALA GLY LEU ALA VAL GLU LEU LYS SEQRES 2 A 215 GLN SER THR ALA GLN ALA HIS GLU LYS ALA GLU HIS SER SEQRES 3 A 215 THR PHE MET SER ASP LEU LEU LYS GLY ARG LEU GLY VAL SEQRES 4 A 215 ALA GLU PHE THR ARG LEU GLN GLU GLN ALA TRP LEU PHE SEQRES 5 A 215 TYR THR ALA LEU GLU GLN ALA VAL ASP ALA VAL ARG ALA SEQRES 6 A 215 SER GLY PHE ALA GLU SER LEU LEU ASP PRO ALA LEU ASN SEQRES 7 A 215 ARG ALA GLU VAL LEU ALA ARG ASP LEU ASP LYS LEU ASN SEQRES 8 A 215 GLY SER SER GLU TRP ARG SER ARG ILE THR ALA SER PRO SEQRES 9 A 215 ALA VAL ILE ASP TYR VAL ASN ARG LEU GLU GLU ILE ARG SEQRES 10 A 215 ASP ASN VAL ASP GLY PRO ALA LEU VAL ALA HIS HIS TYR SEQRES 11 A 215 VAL ARG TYR LEU GLY ASP LEU SER GLY GLY GLN VAL ILE SEQRES 12 A 215 ALA ARG MET MET GLN ARG HIS TYR GLY VAL ASP PRO GLU SEQRES 13 A 215 ALA LEU GLY PHE TYR HIS PHE GLU GLY ILE ALA LYS LEU SEQRES 14 A 215 LYS VAL TYR LYS ASP GLU TYR ARG GLU LYS LEU ASN ASN SEQRES 15 A 215 LEU GLU LEU SER ASP GLU GLN ARG GLU HIS LEU LEU LYS SEQRES 16 A 215 GLU ALA THR ASP ALA PHE VAL PHE ASN HIS GLN VAL PHE SEQRES 17 A 215 ALA ASP LEU GLY LYS GLY LEU SEQRES 1 B 215 MET THR THR ALA THR ALA GLY LEU ALA VAL GLU LEU LYS SEQRES 2 B 215 GLN SER THR ALA GLN ALA HIS GLU LYS ALA GLU HIS SER SEQRES 3 B 215 THR PHE MET SER ASP LEU LEU LYS GLY ARG LEU GLY VAL SEQRES 4 B 215 ALA GLU PHE THR ARG LEU GLN GLU GLN ALA TRP LEU PHE SEQRES 5 B 215 TYR THR ALA LEU GLU GLN ALA VAL ASP ALA VAL ARG ALA SEQRES 6 B 215 SER GLY PHE ALA GLU SER LEU LEU ASP PRO ALA LEU ASN SEQRES 7 B 215 ARG ALA GLU VAL LEU ALA ARG ASP LEU ASP LYS LEU ASN SEQRES 8 B 215 GLY SER SER GLU TRP ARG SER ARG ILE THR ALA SER PRO SEQRES 9 B 215 ALA VAL ILE ASP TYR VAL ASN ARG LEU GLU GLU ILE ARG SEQRES 10 B 215 ASP ASN VAL ASP GLY PRO ALA LEU VAL ALA HIS HIS TYR SEQRES 11 B 215 VAL ARG TYR LEU GLY ASP LEU SER GLY GLY GLN VAL ILE SEQRES 12 B 215 ALA ARG MET MET GLN ARG HIS TYR GLY VAL ASP PRO GLU SEQRES 13 B 215 ALA LEU GLY PHE TYR HIS PHE GLU GLY ILE ALA LYS LEU SEQRES 14 B 215 LYS VAL TYR LYS ASP GLU TYR ARG GLU LYS LEU ASN ASN SEQRES 15 B 215 LEU GLU LEU SER ASP GLU GLN ARG GLU HIS LEU LEU LYS SEQRES 16 B 215 GLU ALA THR ASP ALA PHE VAL PHE ASN HIS GLN VAL PHE SEQRES 17 B 215 ALA ASP LEU GLY LYS GLY LEU SEQRES 1 C 215 MET THR THR ALA THR ALA GLY LEU ALA VAL GLU LEU LYS SEQRES 2 C 215 GLN SER THR ALA GLN ALA HIS GLU LYS ALA GLU HIS SER SEQRES 3 C 215 THR PHE MET SER ASP LEU LEU LYS GLY ARG LEU GLY VAL SEQRES 4 C 215 ALA GLU PHE THR ARG LEU GLN GLU GLN ALA TRP LEU PHE SEQRES 5 C 215 TYR THR ALA LEU GLU GLN ALA VAL ASP ALA VAL ARG ALA SEQRES 6 C 215 SER GLY PHE ALA GLU SER LEU LEU ASP PRO ALA LEU ASN SEQRES 7 C 215 ARG ALA GLU VAL LEU ALA ARG ASP LEU ASP LYS LEU ASN SEQRES 8 C 215 GLY SER SER GLU TRP ARG SER ARG ILE THR ALA SER PRO SEQRES 9 C 215 ALA VAL ILE ASP TYR VAL ASN ARG LEU GLU GLU ILE ARG SEQRES 10 C 215 ASP ASN VAL ASP GLY PRO ALA LEU VAL ALA HIS HIS TYR SEQRES 11 C 215 VAL ARG TYR LEU GLY ASP LEU SER GLY GLY GLN VAL ILE SEQRES 12 C 215 ALA ARG MET MET GLN ARG HIS TYR GLY VAL ASP PRO GLU SEQRES 13 C 215 ALA LEU GLY PHE TYR HIS PHE GLU GLY ILE ALA LYS LEU SEQRES 14 C 215 LYS VAL TYR LYS ASP GLU TYR ARG GLU LYS LEU ASN ASN SEQRES 15 C 215 LEU GLU LEU SER ASP GLU GLN ARG GLU HIS LEU LEU LYS SEQRES 16 C 215 GLU ALA THR ASP ALA PHE VAL PHE ASN HIS GLN VAL PHE SEQRES 17 C 215 ALA ASP LEU GLY LYS GLY LEU HET GLC D 1 11 HET FRU D 2 12 HET HEM A 901 43 HET SO4 A 905 5 HET SO4 A 907 5 HET SO4 A 908 5 HET SO4 A 909 5 HET SO4 A 914 5 HET HEM B 902 43 HET SO4 B 906 5 HET SO4 B 910 5 HET SO4 B 911 5 HET SO4 B 912 5 HET SO4 B 913 5 HET HEM C 903 43 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN HEM HEME FORMUL 4 GLC C6 H12 O6 FORMUL 4 FRU C6 H12 O6 FORMUL 5 HEM 3(C34 H32 FE N4 O4) FORMUL 6 SO4 10(O4 S 2-) FORMUL 18 HOH *584(H2 O) HELIX 1 1 GLY A 7 HIS A 25 1 19 HELIX 2 2 SER A 26 LYS A 34 1 9 HELIX 3 3 GLY A 38 SER A 66 1 29 HELIX 4 4 ASP A 74 ASN A 78 5 5 HELIX 5 5 ARG A 79 GLY A 92 1 14 HELIX 6 6 GLU A 95 ILE A 100 1 6 HELIX 7 7 SER A 103 VAL A 120 1 18 HELIX 8 8 ASP A 121 LEU A 137 1 17 HELIX 9 9 SER A 138 GLY A 152 1 15 HELIX 10 10 ASP A 154 ALA A 157 5 4 HELIX 11 11 LEU A 158 PHE A 163 1 6 HELIX 12 12 LYS A 168 LEU A 183 1 16 HELIX 13 13 SER A 186 LYS A 213 1 28 HELIX 14 14 GLY B 307 HIS B 325 1 19 HELIX 15 15 SER B 326 LYS B 334 1 9 HELIX 16 16 GLY B 338 SER B 366 1 29 HELIX 17 17 ASP B 374 ASN B 378 5 5 HELIX 18 18 ARG B 379 GLY B 392 1 14 HELIX 19 19 GLU B 395 ILE B 400 1 6 HELIX 20 20 SER B 403 VAL B 420 1 18 HELIX 21 21 ASP B 421 SER B 438 1 18 HELIX 22 22 SER B 438 GLY B 452 1 15 HELIX 23 23 ASP B 454 HIS B 462 5 9 HELIX 24 24 LYS B 468 ASN B 482 1 15 HELIX 25 25 SER B 486 LYS B 513 1 28 HELIX 26 26 LEU C 608 HIS C 625 1 18 HELIX 27 27 SER C 626 LYS C 634 1 9 HELIX 28 28 GLY C 638 SER C 666 1 29 HELIX 29 29 ASP C 674 ASN C 678 5 5 HELIX 30 30 ARG C 679 GLY C 692 1 14 HELIX 31 31 SER C 694 ARG C 699 5 6 HELIX 32 32 SER C 703 VAL C 720 1 18 HELIX 33 33 ASP C 721 GLY C 752 1 32 HELIX 34 34 ASP C 754 HIS C 762 5 9 HELIX 35 35 LYS C 768 ASN C 782 1 15 HELIX 36 36 SER C 786 GLY C 812 1 27 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.43 LINK NE2 HIS A 20 FE HEM A 901 1555 1555 2.20 LINK NE2 HIS B 320 FE HEM B 902 1555 1555 2.07 LINK NE2 HIS C 620 FE HEM C 903 1555 1555 2.24 CRYST1 53.865 62.837 107.208 90.00 101.02 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018565 0.000000 0.003615 0.00000 SCALE2 0.000000 0.015914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009503 0.00000