data_1IYP # _entry.id 1IYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1IYP pdb_00001iyp 10.2210/pdb1iyp/pdb RCSB RCSB005415 ? ? WWPDB D_1000005415 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1IYO '1IYO contains Crystal structure of the same protein complexed with CEF and SO4' unspecified PDB 1IYQ '1IYQ contains Crystal structure of the same protein complexed with PNM and SO4' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1IYP _pdbx_database_status.recvd_initial_deposition_date 2002-09-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shimamura, T.' 1 'Ibuka, A.' 2 'Fushinobu, S.' 3 'Wakagi, T.' 4 'Ishiguro, M.' 5 'Ishii, Y.' 6 'Matsuzawa, H.' 7 # _citation.id primary _citation.title ;Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 277 _citation.page_first 46601 _citation.page_last 46608 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12221102 _citation.pdbx_database_id_DOI 10.1074/jbc.M207884200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shimamura, T.' 1 ? primary 'Ibuka, A.' 2 ? primary 'Fushinobu, S.' 3 ? primary 'Wakagi, T.' 4 ? primary 'Ishiguro, M.' 5 ? primary 'Ishii, Y.' 6 ? primary 'Matsuzawa, H.' 7 ? # _cell.entry_id 1IYP _cell.length_a 73.229 _cell.length_b 73.229 _cell.length_c 100.229 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1IYP _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toho-1 beta-lactamase' 28203.936 1 3.5.2.6 E166A ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'CEPHALOTHIN GROUP' 398.454 1 ? ? ? ? 4 water nat water 18.015 138 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ANSVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYN PIAEKHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTAPTLNTAIPGDPRDTTTPLAM AQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQP EQKAERRRDILAAAAKIVTHGF ; _entity_poly.pdbx_seq_one_letter_code_can ;ANSVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYN PIAEKHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTAPTLNTAIPGDPRDTTTPLAM AQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQP EQKAERRRDILAAAAKIVTHGF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASN n 1 3 SER n 1 4 VAL n 1 5 GLN n 1 6 GLN n 1 7 GLN n 1 8 LEU n 1 9 GLU n 1 10 ALA n 1 11 LEU n 1 12 GLU n 1 13 LYS n 1 14 SER n 1 15 SER n 1 16 GLY n 1 17 GLY n 1 18 ARG n 1 19 LEU n 1 20 GLY n 1 21 VAL n 1 22 ALA n 1 23 LEU n 1 24 ILE n 1 25 ASN n 1 26 THR n 1 27 ALA n 1 28 ASP n 1 29 ASN n 1 30 SER n 1 31 GLN n 1 32 ILE n 1 33 LEU n 1 34 TYR n 1 35 ARG n 1 36 ALA n 1 37 ASP n 1 38 GLU n 1 39 ARG n 1 40 PHE n 1 41 ALA n 1 42 MET n 1 43 CYS n 1 44 SER n 1 45 THR n 1 46 SER n 1 47 LYS n 1 48 VAL n 1 49 MET n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 ALA n 1 54 VAL n 1 55 LEU n 1 56 LYS n 1 57 GLN n 1 58 SER n 1 59 GLU n 1 60 SER n 1 61 ASP n 1 62 LYS n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 ASN n 1 67 GLN n 1 68 ARG n 1 69 VAL n 1 70 GLU n 1 71 ILE n 1 72 LYS n 1 73 LYS n 1 74 SER n 1 75 ASP n 1 76 LEU n 1 77 VAL n 1 78 ASN n 1 79 TYR n 1 80 ASN n 1 81 PRO n 1 82 ILE n 1 83 ALA n 1 84 GLU n 1 85 LYS n 1 86 HIS n 1 87 VAL n 1 88 ASN n 1 89 GLY n 1 90 THR n 1 91 MET n 1 92 THR n 1 93 LEU n 1 94 ALA n 1 95 GLU n 1 96 LEU n 1 97 GLY n 1 98 ALA n 1 99 ALA n 1 100 ALA n 1 101 LEU n 1 102 GLN n 1 103 TYR n 1 104 SER n 1 105 ASP n 1 106 ASN n 1 107 THR n 1 108 ALA n 1 109 MET n 1 110 ASN n 1 111 LYS n 1 112 LEU n 1 113 ILE n 1 114 ALA n 1 115 HIS n 1 116 LEU n 1 117 GLY n 1 118 GLY n 1 119 PRO n 1 120 ASP n 1 121 LYS n 1 122 VAL n 1 123 THR n 1 124 ALA n 1 125 PHE n 1 126 ALA n 1 127 ARG n 1 128 SER n 1 129 LEU n 1 130 GLY n 1 131 ASP n 1 132 GLU n 1 133 THR n 1 134 PHE n 1 135 ARG n 1 136 LEU n 1 137 ASP n 1 138 ARG n 1 139 THR n 1 140 ALA n 1 141 PRO n 1 142 THR n 1 143 LEU n 1 144 ASN n 1 145 THR n 1 146 ALA n 1 147 ILE n 1 148 PRO n 1 149 GLY n 1 150 ASP n 1 151 PRO n 1 152 ARG n 1 153 ASP n 1 154 THR n 1 155 THR n 1 156 THR n 1 157 PRO n 1 158 LEU n 1 159 ALA n 1 160 MET n 1 161 ALA n 1 162 GLN n 1 163 THR n 1 164 LEU n 1 165 LYS n 1 166 ASN n 1 167 LEU n 1 168 THR n 1 169 LEU n 1 170 GLY n 1 171 LYS n 1 172 ALA n 1 173 LEU n 1 174 ALA n 1 175 GLU n 1 176 THR n 1 177 GLN n 1 178 ARG n 1 179 ALA n 1 180 GLN n 1 181 LEU n 1 182 VAL n 1 183 THR n 1 184 TRP n 1 185 LEU n 1 186 LYS n 1 187 GLY n 1 188 ASN n 1 189 THR n 1 190 THR n 1 191 GLY n 1 192 SER n 1 193 ALA n 1 194 SER n 1 195 ILE n 1 196 ARG n 1 197 ALA n 1 198 GLY n 1 199 LEU n 1 200 PRO n 1 201 LYS n 1 202 SER n 1 203 TRP n 1 204 VAL n 1 205 VAL n 1 206 GLY n 1 207 ASP n 1 208 LYS n 1 209 THR n 1 210 GLY n 1 211 SER n 1 212 GLY n 1 213 ASP n 1 214 TYR n 1 215 GLY n 1 216 THR n 1 217 THR n 1 218 ASN n 1 219 ASP n 1 220 ILE n 1 221 ALA n 1 222 VAL n 1 223 ILE n 1 224 TRP n 1 225 PRO n 1 226 GLU n 1 227 ASN n 1 228 HIS n 1 229 ALA n 1 230 PRO n 1 231 LEU n 1 232 VAL n 1 233 LEU n 1 234 VAL n 1 235 THR n 1 236 TYR n 1 237 PHE n 1 238 THR n 1 239 GLN n 1 240 PRO n 1 241 GLU n 1 242 GLN n 1 243 LYS n 1 244 ALA n 1 245 GLU n 1 246 ARG n 1 247 ARG n 1 248 ARG n 1 249 ASP n 1 250 ILE n 1 251 LEU n 1 252 ALA n 1 253 ALA n 1 254 ALA n 1 255 ALA n 1 256 LYS n 1 257 ILE n 1 258 VAL n 1 259 THR n 1 260 HIS n 1 261 GLY n 1 262 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUC119 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLT1_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ANSVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYN PIAEKHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPGDPRDTTTPLAM AQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQP EQKAERRRDILAAAAKIVTHGF ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_accession Q47066 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1IYP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q47066 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 290 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1IYP _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 140 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q47066 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 169 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 166 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CEP non-polymer . 'CEPHALOTHIN GROUP' ? 'C16 H18 N2 O6 S2' 398.454 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1IYP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.08 _exptl_crystal.density_Matthews 2.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 1IYP _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 40 _reflns.number_all ? _reflns.number_obs 28507 _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1IYP _refine.ls_d_res_high 2 _refine.ls_d_res_low 40 _refine.pdbx_ls_sigma_F 3 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20985 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.245 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1967 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 2142 _refine_hist.d_res_high 2 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1IYP _struct.title 'Toho-1 beta-Lactamase In Complex With Cephalothin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1IYP _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'beta-lactamase, acyl-enzyme, complex, cephalothin, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 16 ? SER A 28 GLY A 41 1 ? 14 HELX_P HELX_P2 2 CYS A 43 ? THR A 45 ? CYS A 69 THR A 71 5 ? 3 HELX_P HELX_P3 3 SER A 46 ? GLU A 59 ? SER A 72 GLU A 85 1 ? 14 HELX_P HELX_P4 4 HIS A 63 ? ASN A 66 ? HIS A 89 ASN A 92 5 ? 4 HELX_P HELX_P5 5 ALA A 83 ? VAL A 87 ? ALA A 109 VAL A 113 5 ? 5 HELX_P HELX_P6 6 LEU A 93 ? TYR A 103 ? LEU A 119 TYR A 129 1 ? 11 HELX_P HELX_P7 7 ASP A 105 ? GLY A 117 ? ASP A 131 GLY A 143 1 ? 13 HELX_P HELX_P8 8 GLY A 118 ? LEU A 129 ? GLY A 144 LEU A 155 1 ? 12 HELX_P HELX_P9 9 PRO A 141 ? THR A 145 ? PRO A 167 THR A 171 5 ? 5 HELX_P HELX_P10 10 THR A 156 ? GLY A 170 ? THR A 182 GLY A 196 1 ? 15 HELX_P HELX_P11 11 ALA A 174 ? GLY A 187 ? ALA A 200 GLY A 213 1 ? 14 HELX_P HELX_P12 12 SER A 194 ? LEU A 199 ? SER A 220 LEU A 225 5 ? 6 HELX_P HELX_P13 13 ARG A 247 ? HIS A 260 ? ARG A 275 HIS A 288 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_comp_id CEP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C8 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CEP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.351 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 140 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 166 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 141 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 167 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 31 ? TYR A 34 ? GLN A 56 TYR A 60 A 2 ARG A 18 ? ASN A 25 ? ARG A 43 ASN A 50 A 3 LEU A 231 ? THR A 238 ? LEU A 259 THR A 266 A 4 THR A 217 ? TRP A 224 ? THR A 244 TRP A 251 A 5 VAL A 204 ? SER A 211 ? VAL A 230 SER A 237 B 1 PHE A 40 ? ALA A 41 ? PHE A 66 ALA A 67 B 2 THR A 154 ? THR A 155 ? THR A 180 THR A 181 C 1 ARG A 68 ? ILE A 71 ? ARG A 94 ILE A 97 C 2 GLY A 89 ? THR A 92 ? GLY A 115 THR A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 34 ? O TYR A 60 N VAL A 21 ? N VAL A 46 A 2 3 N GLY A 20 ? N GLY A 45 O TYR A 236 ? O TYR A 264 A 3 4 O LEU A 233 ? O LEU A 261 N ALA A 221 ? N ALA A 248 A 4 5 O TRP A 224 ? O TRP A 251 N VAL A 204 ? N VAL A 230 B 1 2 N PHE A 40 ? N PHE A 66 O THR A 155 ? O THR A 181 C 1 2 N VAL A 69 ? N VAL A 95 O MET A 91 ? O MET A 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 401 ? 6 'BINDING SITE FOR RESIDUE SO4 A 401' AC2 Software A SO4 402 ? 7 'BINDING SITE FOR RESIDUE SO4 A 402' AC3 Software A SO4 403 ? 6 'BINDING SITE FOR RESIDUE SO4 A 403' AC4 Software A CEP 301 ? 15 'BINDING SITE FOR RESIDUE CEP A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 171 ? LYS A 197 . ? 3_665 ? 2 AC1 6 GLU A 245 ? GLU A 273 . ? 1_555 ? 3 AC1 6 ARG A 246 ? ARG A 274 . ? 1_555 ? 4 AC1 6 ARG A 248 ? ARG A 276 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 508 . ? 3_665 ? 6 AC1 6 HOH F . ? HOH A 609 . ? 1_555 ? 7 AC2 7 LYS A 56 ? LYS A 82 . ? 3_665 ? 8 AC2 7 ARG A 248 ? ARG A 276 . ? 1_555 ? 9 AC2 7 ASP A 249 ? ASP A 277 . ? 1_555 ? 10 AC2 7 HOH F . ? HOH A 504 . ? 1_555 ? 11 AC2 7 HOH F . ? HOH A 566 . ? 1_555 ? 12 AC2 7 HOH F . ? HOH A 609 . ? 1_555 ? 13 AC2 7 HOH F . ? HOH A 610 . ? 1_555 ? 14 AC3 6 TRP A 203 ? TRP A 229 . ? 1_555 ? 15 AC3 6 PRO A 225 ? PRO A 252 . ? 1_555 ? 16 AC3 6 GLU A 226 ? GLU A 254 . ? 1_555 ? 17 AC3 6 ASN A 227 ? ASN A 255 . ? 1_555 ? 18 AC3 6 HIS A 228 ? HIS A 256 . ? 1_555 ? 19 AC3 6 PHE A 262 ? PHE A 290 . ? 1_555 ? 20 AC4 15 CYS A 43 ? CYS A 69 . ? 1_555 ? 21 AC4 15 SER A 44 ? SER A 70 . ? 1_555 ? 22 AC4 15 ASN A 78 ? ASN A 104 . ? 1_555 ? 23 AC4 15 TYR A 79 ? TYR A 105 . ? 1_555 ? 24 AC4 15 SER A 104 ? SER A 130 . ? 1_555 ? 25 AC4 15 ASN A 106 ? ASN A 132 . ? 1_555 ? 26 AC4 15 PRO A 141 ? PRO A 167 . ? 1_555 ? 27 AC4 15 ASN A 144 ? ASN A 170 . ? 1_555 ? 28 AC4 15 LYS A 208 ? LYS A 234 . ? 1_555 ? 29 AC4 15 THR A 209 ? THR A 235 . ? 1_555 ? 30 AC4 15 GLY A 210 ? GLY A 236 . ? 1_555 ? 31 AC4 15 SER A 211 ? SER A 237 . ? 1_555 ? 32 AC4 15 GLY A 212 ? GLY A 238 . ? 1_555 ? 33 AC4 15 ASP A 213 ? ASP A 240 . ? 1_555 ? 34 AC4 15 HOH F . ? HOH A 587 . ? 1_555 ? # _database_PDB_matrix.entry_id 1IYP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1IYP _atom_sites.fract_transf_matrix[1][1] 0.013656 _atom_sites.fract_transf_matrix[1][2] 0.007884 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015768 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009977 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 26 ? ? ? A . n A 1 2 ASN 2 27 ? ? ? A . n A 1 3 SER 3 28 28 SER SER A . n A 1 4 VAL 4 29 29 VAL VAL A . n A 1 5 GLN 5 30 30 GLN GLN A . n A 1 6 GLN 6 31 31 GLN GLN A . n A 1 7 GLN 7 32 32 GLN GLN A . n A 1 8 LEU 8 33 33 LEU LEU A . n A 1 9 GLU 9 34 34 GLU GLU A . n A 1 10 ALA 10 35 35 ALA ALA A . n A 1 11 LEU 11 36 36 LEU LEU A . n A 1 12 GLU 12 37 37 GLU GLU A . n A 1 13 LYS 13 38 38 LYS LYS A . n A 1 14 SER 14 39 39 SER SER A . n A 1 15 SER 15 40 40 SER SER A . n A 1 16 GLY 16 41 41 GLY GLY A . n A 1 17 GLY 17 42 42 GLY GLY A . n A 1 18 ARG 18 43 43 ARG ARG A . n A 1 19 LEU 19 44 44 LEU LEU A . n A 1 20 GLY 20 45 45 GLY GLY A . n A 1 21 VAL 21 46 46 VAL VAL A . n A 1 22 ALA 22 47 47 ALA ALA A . n A 1 23 LEU 23 48 48 LEU LEU A . n A 1 24 ILE 24 49 49 ILE ILE A . n A 1 25 ASN 25 50 50 ASN ASN A . n A 1 26 THR 26 51 51 THR THR A . n A 1 27 ALA 27 52 52 ALA ALA A . n A 1 28 ASP 28 53 53 ASP ASP A . n A 1 29 ASN 29 54 54 ASN ASN A . n A 1 30 SER 30 55 55 SER SER A . n A 1 31 GLN 31 56 56 GLN GLN A . n A 1 32 ILE 32 57 57 ILE ILE A . n A 1 33 LEU 33 59 59 LEU LEU A . n A 1 34 TYR 34 60 60 TYR TYR A . n A 1 35 ARG 35 61 61 ARG ARG A . n A 1 36 ALA 36 62 62 ALA ALA A . n A 1 37 ASP 37 63 63 ASP ASP A . n A 1 38 GLU 38 64 64 GLU GLU A . n A 1 39 ARG 39 65 65 ARG ARG A . n A 1 40 PHE 40 66 66 PHE PHE A . n A 1 41 ALA 41 67 67 ALA ALA A . n A 1 42 MET 42 68 68 MET MET A . n A 1 43 CYS 43 69 69 CYS CYS A . n A 1 44 SER 44 70 70 SER SER A . n A 1 45 THR 45 71 71 THR THR A . n A 1 46 SER 46 72 72 SER SER A . n A 1 47 LYS 47 73 73 LYS LYS A . n A 1 48 VAL 48 74 74 VAL VAL A . n A 1 49 MET 49 75 75 MET MET A . n A 1 50 ALA 50 76 76 ALA ALA A . n A 1 51 ALA 51 77 77 ALA ALA A . n A 1 52 ALA 52 78 78 ALA ALA A . n A 1 53 ALA 53 79 79 ALA ALA A . n A 1 54 VAL 54 80 80 VAL VAL A . n A 1 55 LEU 55 81 81 LEU LEU A . n A 1 56 LYS 56 82 82 LYS LYS A . n A 1 57 GLN 57 83 83 GLN GLN A . n A 1 58 SER 58 84 84 SER SER A . n A 1 59 GLU 59 85 85 GLU GLU A . n A 1 60 SER 60 86 86 SER SER A . n A 1 61 ASP 61 87 87 ASP ASP A . n A 1 62 LYS 62 88 88 LYS LYS A . n A 1 63 HIS 63 89 89 HIS HIS A . n A 1 64 LEU 64 90 90 LEU LEU A . n A 1 65 LEU 65 91 91 LEU LEU A . n A 1 66 ASN 66 92 92 ASN ASN A . n A 1 67 GLN 67 93 93 GLN GLN A . n A 1 68 ARG 68 94 94 ARG ARG A . n A 1 69 VAL 69 95 95 VAL VAL A . n A 1 70 GLU 70 96 96 GLU GLU A . n A 1 71 ILE 71 97 97 ILE ILE A . n A 1 72 LYS 72 98 98 LYS LYS A . n A 1 73 LYS 73 99 99 LYS LYS A . n A 1 74 SER 74 100 100 SER SER A . n A 1 75 ASP 75 101 101 ASP ASP A . n A 1 76 LEU 76 102 102 LEU LEU A . n A 1 77 VAL 77 103 103 VAL VAL A . n A 1 78 ASN 78 104 104 ASN ASN A . n A 1 79 TYR 79 105 105 TYR TYR A . n A 1 80 ASN 80 106 106 ASN ASN A . n A 1 81 PRO 81 107 107 PRO PRO A . n A 1 82 ILE 82 108 108 ILE ILE A . n A 1 83 ALA 83 109 109 ALA ALA A . n A 1 84 GLU 84 110 110 GLU GLU A . n A 1 85 LYS 85 111 111 LYS LYS A . n A 1 86 HIS 86 112 112 HIS HIS A . n A 1 87 VAL 87 113 113 VAL VAL A . n A 1 88 ASN 88 114 114 ASN ASN A . n A 1 89 GLY 89 115 115 GLY GLY A . n A 1 90 THR 90 116 116 THR THR A . n A 1 91 MET 91 117 117 MET MET A . n A 1 92 THR 92 118 118 THR THR A . n A 1 93 LEU 93 119 119 LEU LEU A . n A 1 94 ALA 94 120 120 ALA ALA A . n A 1 95 GLU 95 121 121 GLU GLU A . n A 1 96 LEU 96 122 122 LEU LEU A . n A 1 97 GLY 97 123 123 GLY GLY A . n A 1 98 ALA 98 124 124 ALA ALA A . n A 1 99 ALA 99 125 125 ALA ALA A . n A 1 100 ALA 100 126 126 ALA ALA A . n A 1 101 LEU 101 127 127 LEU LEU A . n A 1 102 GLN 102 128 128 GLN GLN A . n A 1 103 TYR 103 129 129 TYR TYR A . n A 1 104 SER 104 130 130 SER SER A . n A 1 105 ASP 105 131 131 ASP ASP A . n A 1 106 ASN 106 132 132 ASN ASN A . n A 1 107 THR 107 133 133 THR THR A . n A 1 108 ALA 108 134 134 ALA ALA A . n A 1 109 MET 109 135 135 MET MET A . n A 1 110 ASN 110 136 136 ASN ASN A . n A 1 111 LYS 111 137 137 LYS LYS A . n A 1 112 LEU 112 138 138 LEU LEU A . n A 1 113 ILE 113 139 139 ILE ILE A . n A 1 114 ALA 114 140 140 ALA ALA A . n A 1 115 HIS 115 141 141 HIS HIS A . n A 1 116 LEU 116 142 142 LEU LEU A . n A 1 117 GLY 117 143 143 GLY GLY A . n A 1 118 GLY 118 144 144 GLY GLY A . n A 1 119 PRO 119 145 145 PRO PRO A . n A 1 120 ASP 120 146 146 ASP ASP A . n A 1 121 LYS 121 147 147 LYS LYS A . n A 1 122 VAL 122 148 148 VAL VAL A . n A 1 123 THR 123 149 149 THR THR A . n A 1 124 ALA 124 150 150 ALA ALA A . n A 1 125 PHE 125 151 151 PHE PHE A . n A 1 126 ALA 126 152 152 ALA ALA A . n A 1 127 ARG 127 153 153 ARG ARG A . n A 1 128 SER 128 154 154 SER SER A . n A 1 129 LEU 129 155 155 LEU LEU A . n A 1 130 GLY 130 156 156 GLY GLY A . n A 1 131 ASP 131 157 157 ASP ASP A . n A 1 132 GLU 132 158 158 GLU GLU A . n A 1 133 THR 133 159 159 THR THR A . n A 1 134 PHE 134 160 160 PHE PHE A . n A 1 135 ARG 135 161 161 ARG ARG A . n A 1 136 LEU 136 162 162 LEU LEU A . n A 1 137 ASP 137 163 163 ASP ASP A . n A 1 138 ARG 138 164 164 ARG ARG A . n A 1 139 THR 139 165 165 THR THR A . n A 1 140 ALA 140 166 166 ALA ALA A . n A 1 141 PRO 141 167 167 PRO PRO A . n A 1 142 THR 142 168 168 THR THR A . n A 1 143 LEU 143 169 169 LEU LEU A . n A 1 144 ASN 144 170 170 ASN ASN A . n A 1 145 THR 145 171 171 THR THR A . n A 1 146 ALA 146 172 172 ALA ALA A . n A 1 147 ILE 147 173 173 ILE ILE A . n A 1 148 PRO 148 174 174 PRO PRO A . n A 1 149 GLY 149 175 175 GLY GLY A . n A 1 150 ASP 150 176 176 ASP ASP A . n A 1 151 PRO 151 177 177 PRO PRO A . n A 1 152 ARG 152 178 178 ARG ARG A . n A 1 153 ASP 153 179 179 ASP ASP A . n A 1 154 THR 154 180 180 THR THR A . n A 1 155 THR 155 181 181 THR THR A . n A 1 156 THR 156 182 182 THR THR A . n A 1 157 PRO 157 183 183 PRO PRO A . n A 1 158 LEU 158 184 184 LEU LEU A . n A 1 159 ALA 159 185 185 ALA ALA A . n A 1 160 MET 160 186 186 MET MET A . n A 1 161 ALA 161 187 187 ALA ALA A . n A 1 162 GLN 162 188 188 GLN GLN A . n A 1 163 THR 163 189 189 THR THR A . n A 1 164 LEU 164 190 190 LEU LEU A . n A 1 165 LYS 165 191 191 LYS LYS A . n A 1 166 ASN 166 192 192 ASN ASN A . n A 1 167 LEU 167 193 193 LEU LEU A . n A 1 168 THR 168 194 194 THR THR A . n A 1 169 LEU 169 195 195 LEU LEU A . n A 1 170 GLY 170 196 196 GLY GLY A . n A 1 171 LYS 171 197 197 LYS LYS A . n A 1 172 ALA 172 198 198 ALA ALA A . n A 1 173 LEU 173 199 199 LEU LEU A . n A 1 174 ALA 174 200 200 ALA ALA A . n A 1 175 GLU 175 201 201 GLU GLU A . n A 1 176 THR 176 202 202 THR THR A . n A 1 177 GLN 177 203 203 GLN GLN A . n A 1 178 ARG 178 204 204 ARG ARG A . n A 1 179 ALA 179 205 205 ALA ALA A . n A 1 180 GLN 180 206 206 GLN GLN A . n A 1 181 LEU 181 207 207 LEU LEU A . n A 1 182 VAL 182 208 208 VAL VAL A . n A 1 183 THR 183 209 209 THR THR A . n A 1 184 TRP 184 210 210 TRP TRP A . n A 1 185 LEU 185 211 211 LEU LEU A . n A 1 186 LYS 186 212 212 LYS LYS A . n A 1 187 GLY 187 213 213 GLY GLY A . n A 1 188 ASN 188 214 214 ASN ASN A . n A 1 189 THR 189 215 215 THR THR A . n A 1 190 THR 190 216 216 THR THR A . n A 1 191 GLY 191 217 217 GLY GLY A . n A 1 192 SER 192 218 218 SER SER A . n A 1 193 ALA 193 219 219 ALA ALA A . n A 1 194 SER 194 220 220 SER SER A . n A 1 195 ILE 195 221 221 ILE ILE A . n A 1 196 ARG 196 222 222 ARG ARG A . n A 1 197 ALA 197 223 223 ALA ALA A . n A 1 198 GLY 198 224 224 GLY GLY A . n A 1 199 LEU 199 225 225 LEU LEU A . n A 1 200 PRO 200 226 226 PRO PRO A . n A 1 201 LYS 201 227 227 LYS LYS A . n A 1 202 SER 202 228 228 SER SER A . n A 1 203 TRP 203 229 229 TRP TRP A . n A 1 204 VAL 204 230 230 VAL VAL A . n A 1 205 VAL 205 231 231 VAL VAL A . n A 1 206 GLY 206 232 232 GLY GLY A . n A 1 207 ASP 207 233 233 ASP ASP A . n A 1 208 LYS 208 234 234 LYS LYS A . n A 1 209 THR 209 235 235 THR THR A . n A 1 210 GLY 210 236 236 GLY GLY A . n A 1 211 SER 211 237 237 SER SER A . n A 1 212 GLY 212 238 238 GLY GLY A . n A 1 213 ASP 213 240 240 ASP ASP A . n A 1 214 TYR 214 241 241 TYR TYR A . n A 1 215 GLY 215 242 242 GLY GLY A . n A 1 216 THR 216 243 243 THR THR A . n A 1 217 THR 217 244 244 THR THR A . n A 1 218 ASN 218 245 245 ASN ASN A . n A 1 219 ASP 219 246 246 ASP ASP A . n A 1 220 ILE 220 247 247 ILE ILE A . n A 1 221 ALA 221 248 248 ALA ALA A . n A 1 222 VAL 222 249 249 VAL VAL A . n A 1 223 ILE 223 250 250 ILE ILE A . n A 1 224 TRP 224 251 251 TRP TRP A . n A 1 225 PRO 225 252 252 PRO PRO A . n A 1 226 GLU 226 254 254 GLU GLU A . n A 1 227 ASN 227 255 255 ASN ASN A . n A 1 228 HIS 228 256 256 HIS HIS A . n A 1 229 ALA 229 257 257 ALA ALA A . n A 1 230 PRO 230 258 258 PRO PRO A . n A 1 231 LEU 231 259 259 LEU LEU A . n A 1 232 VAL 232 260 260 VAL VAL A . n A 1 233 LEU 233 261 261 LEU LEU A . n A 1 234 VAL 234 262 262 VAL VAL A . n A 1 235 THR 235 263 263 THR THR A . n A 1 236 TYR 236 264 264 TYR TYR A . n A 1 237 PHE 237 265 265 PHE PHE A . n A 1 238 THR 238 266 266 THR THR A . n A 1 239 GLN 239 267 267 GLN GLN A . n A 1 240 PRO 240 268 268 PRO PRO A . n A 1 241 GLU 241 269 269 GLU GLU A . n A 1 242 GLN 242 270 270 GLN GLN A . n A 1 243 LYS 243 271 271 LYS LYS A . n A 1 244 ALA 244 272 272 ALA ALA A . n A 1 245 GLU 245 273 273 GLU GLU A . n A 1 246 ARG 246 274 274 ARG ARG A . n A 1 247 ARG 247 275 275 ARG ARG A . n A 1 248 ARG 248 276 276 ARG ARG A . n A 1 249 ASP 249 277 277 ASP ASP A . n A 1 250 ILE 250 278 278 ILE ILE A . n A 1 251 LEU 251 279 279 LEU LEU A . n A 1 252 ALA 252 280 280 ALA ALA A . n A 1 253 ALA 253 281 281 ALA ALA A . n A 1 254 ALA 254 282 282 ALA ALA A . n A 1 255 ALA 255 283 283 ALA ALA A . n A 1 256 LYS 256 284 284 LYS LYS A . n A 1 257 ILE 257 285 285 ILE ILE A . n A 1 258 VAL 258 286 286 VAL VAL A . n A 1 259 THR 259 287 287 THR THR A . n A 1 260 HIS 260 288 288 HIS HIS A . n A 1 261 GLY 261 289 289 GLY GLY A . n A 1 262 PHE 262 290 290 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 401 401 SO4 SO4 A . C 2 SO4 1 402 402 SO4 SO4 A . D 2 SO4 1 403 403 SO4 SO4 A . E 3 CEP 1 301 301 CEP CEP A . F 4 HOH 1 501 501 HOH HOH A . F 4 HOH 2 502 502 HOH HOH A . F 4 HOH 3 503 503 HOH HOH A . F 4 HOH 4 504 504 HOH HOH A . F 4 HOH 5 505 505 HOH HOH A . F 4 HOH 6 506 506 HOH HOH A . F 4 HOH 7 507 507 HOH HOH A . F 4 HOH 8 508 508 HOH HOH A . F 4 HOH 9 509 509 HOH HOH A . F 4 HOH 10 510 510 HOH HOH A . F 4 HOH 11 511 511 HOH HOH A . F 4 HOH 12 512 512 HOH HOH A . F 4 HOH 13 513 513 HOH HOH A . F 4 HOH 14 514 514 HOH HOH A . F 4 HOH 15 515 515 HOH HOH A . F 4 HOH 16 516 516 HOH HOH A . F 4 HOH 17 517 517 HOH HOH A . F 4 HOH 18 518 518 HOH HOH A . F 4 HOH 19 519 519 HOH HOH A . F 4 HOH 20 520 520 HOH HOH A . F 4 HOH 21 521 521 HOH HOH A . F 4 HOH 22 522 522 HOH HOH A . F 4 HOH 23 523 523 HOH HOH A . F 4 HOH 24 524 524 HOH HOH A . F 4 HOH 25 525 525 HOH HOH A . F 4 HOH 26 526 526 HOH HOH A . F 4 HOH 27 527 527 HOH HOH A . F 4 HOH 28 528 528 HOH HOH A . F 4 HOH 29 529 529 HOH HOH A . F 4 HOH 30 530 530 HOH HOH A . F 4 HOH 31 531 531 HOH HOH A . F 4 HOH 32 532 532 HOH HOH A . F 4 HOH 33 533 533 HOH HOH A . F 4 HOH 34 534 534 HOH HOH A . F 4 HOH 35 535 535 HOH HOH A . F 4 HOH 36 536 536 HOH HOH A . F 4 HOH 37 537 537 HOH HOH A . F 4 HOH 38 538 538 HOH HOH A . F 4 HOH 39 539 539 HOH HOH A . F 4 HOH 40 540 540 HOH HOH A . F 4 HOH 41 541 541 HOH HOH A . F 4 HOH 42 542 542 HOH HOH A . F 4 HOH 43 543 543 HOH HOH A . F 4 HOH 44 544 544 HOH HOH A . F 4 HOH 45 545 545 HOH HOH A . F 4 HOH 46 546 546 HOH HOH A . F 4 HOH 47 547 547 HOH HOH A . F 4 HOH 48 548 548 HOH HOH A . F 4 HOH 49 549 549 HOH HOH A . F 4 HOH 50 550 550 HOH HOH A . F 4 HOH 51 551 551 HOH HOH A . F 4 HOH 52 552 552 HOH HOH A . F 4 HOH 53 553 553 HOH HOH A . F 4 HOH 54 554 554 HOH HOH A . F 4 HOH 55 555 555 HOH HOH A . F 4 HOH 56 556 556 HOH HOH A . F 4 HOH 57 557 557 HOH HOH A . F 4 HOH 58 558 558 HOH HOH A . F 4 HOH 59 559 559 HOH HOH A . F 4 HOH 60 560 560 HOH HOH A . F 4 HOH 61 561 561 HOH HOH A . F 4 HOH 62 562 562 HOH HOH A . F 4 HOH 63 563 563 HOH HOH A . F 4 HOH 64 564 564 HOH HOH A . F 4 HOH 65 565 565 HOH HOH A . F 4 HOH 66 566 566 HOH HOH A . F 4 HOH 67 567 567 HOH HOH A . F 4 HOH 68 568 568 HOH HOH A . F 4 HOH 69 569 569 HOH HOH A . F 4 HOH 70 570 570 HOH HOH A . F 4 HOH 71 571 571 HOH HOH A . F 4 HOH 72 572 572 HOH HOH A . F 4 HOH 73 573 573 HOH HOH A . F 4 HOH 74 574 574 HOH HOH A . F 4 HOH 75 575 575 HOH HOH A . F 4 HOH 76 576 576 HOH HOH A . F 4 HOH 77 577 577 HOH HOH A . F 4 HOH 78 578 578 HOH HOH A . F 4 HOH 79 579 579 HOH HOH A . F 4 HOH 80 580 580 HOH HOH A . F 4 HOH 81 581 581 HOH HOH A . F 4 HOH 82 582 582 HOH HOH A . F 4 HOH 83 583 583 HOH HOH A . F 4 HOH 84 584 584 HOH HOH A . F 4 HOH 85 585 585 HOH HOH A . F 4 HOH 86 586 586 HOH HOH A . F 4 HOH 87 587 587 HOH HOH A . F 4 HOH 88 588 588 HOH HOH A . F 4 HOH 89 589 589 HOH HOH A . F 4 HOH 90 590 590 HOH HOH A . F 4 HOH 91 591 591 HOH HOH A . F 4 HOH 92 592 592 HOH HOH A . F 4 HOH 93 593 593 HOH HOH A . F 4 HOH 94 594 594 HOH HOH A . F 4 HOH 95 595 595 HOH HOH A . F 4 HOH 96 596 596 HOH HOH A . F 4 HOH 97 597 597 HOH HOH A . F 4 HOH 98 598 598 HOH HOH A . F 4 HOH 99 599 599 HOH HOH A . F 4 HOH 100 600 600 HOH HOH A . F 4 HOH 101 601 601 HOH HOH A . F 4 HOH 102 602 602 HOH HOH A . F 4 HOH 103 603 603 HOH HOH A . F 4 HOH 104 604 604 HOH HOH A . F 4 HOH 105 605 605 HOH HOH A . F 4 HOH 106 606 606 HOH HOH A . F 4 HOH 107 607 607 HOH HOH A . F 4 HOH 108 608 608 HOH HOH A . F 4 HOH 109 609 609 HOH HOH A . F 4 HOH 110 610 610 HOH HOH A . F 4 HOH 111 611 611 HOH HOH A . F 4 HOH 112 612 612 HOH HOH A . F 4 HOH 113 613 613 HOH HOH A . F 4 HOH 114 614 614 HOH HOH A . F 4 HOH 115 615 615 HOH HOH A . F 4 HOH 116 616 616 HOH HOH A . F 4 HOH 117 617 617 HOH HOH A . F 4 HOH 118 618 618 HOH HOH A . F 4 HOH 119 619 619 HOH HOH A . F 4 HOH 120 620 620 HOH HOH A . F 4 HOH 121 621 621 HOH HOH A . F 4 HOH 122 622 622 HOH HOH A . F 4 HOH 123 623 623 HOH HOH A . F 4 HOH 124 624 624 HOH HOH A . F 4 HOH 125 625 625 HOH HOH A . F 4 HOH 126 626 626 HOH HOH A . F 4 HOH 127 627 627 HOH HOH A . F 4 HOH 128 628 628 HOH HOH A . F 4 HOH 129 629 629 HOH HOH A . F 4 HOH 130 630 630 HOH HOH A . F 4 HOH 131 631 631 HOH HOH A . F 4 HOH 132 632 632 HOH HOH A . F 4 HOH 133 633 633 HOH HOH A . F 4 HOH 134 634 634 HOH HOH A . F 4 HOH 135 635 635 HOH HOH A . F 4 HOH 136 636 636 HOH HOH A . F 4 HOH 137 637 637 HOH HOH A . F 4 HOH 138 638 638 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 53 ? ? -140.33 14.23 2 1 ASN A 54 ? ? 57.92 17.91 3 1 CYS A 69 ? ? 60.63 -141.44 4 1 VAL A 103 ? ? -112.26 -136.43 5 1 ASN A 106 ? ? -163.01 67.62 6 1 ASN A 114 ? ? 85.08 1.77 7 1 SER A 220 ? ? -95.07 -128.38 8 1 ASP A 246 ? ? -170.46 131.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A CEP 301 ? "C2'" ? E CEP 1 "C2'" 2 1 N 1 A CEP 301 ? "O1'" ? E CEP 1 "O1'" 3 1 N 1 A CEP 301 ? "O2'" ? E CEP 1 "O2'" 4 1 N 1 A CEP 301 ? "C1'" ? E CEP 1 "C1'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 26 ? A ALA 1 2 1 Y 1 A ASN 27 ? A ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CEPHALOTHIN GROUP' CEP 4 water HOH #