HEADER APOPTOSIS 05-SEP-02 1IYR TITLE NMR STRUCTURE ENSEMBLE OF DFF-C DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 5-111; COMPND 5 SYNONYM: DFF45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DFF, APOPTOSIS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 27-DEC-23 1IYR 1 REMARK REVDAT 4 23-FEB-22 1IYR 1 REMARK SEQADV REVDAT 3 24-FEB-09 1IYR 1 VERSN REVDAT 2 27-APR-04 1IYR 1 TITLE REMARK REVDAT 1 25-SEP-02 1IYR 0 JRNL AUTH K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DFF-C DOMAIN OF DFF45/ICAD. A JRNL TITL 2 STRUCTURAL BASIS FOR THE REGULATION OF APOPTOTIC DNA JRNL TITL 3 FRAGMENTATION JRNL REF J.MOL.BIOL. V. 321 317 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12144788 JRNL DOI 10.1016/S0022-2836(02)00588-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IYR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000005417. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 SER A 88 REMARK 465 ILE A 89 REMARK 465 SER A 90 REMARK 465 ALA A 91 REMARK 465 SER A 92 REMARK 465 LYS A 93 REMARK 465 ALA A 94 REMARK 465 SER A 95 REMARK 465 PRO A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 ASP A 99 REMARK 465 LEU A 100 REMARK 465 GLN A 101 REMARK 465 ASN A 102 REMARK 465 PRO A 103 REMARK 465 LYS A 104 REMARK 465 ARG A 105 REMARK 465 ALA A 106 REMARK 465 ARG A 107 REMARK 465 GLN A 108 REMARK 465 ASP A 109 REMARK 465 PRO A 110 REMARK 465 THR A 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 ARG A 87 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 174.82 -48.73 REMARK 500 1 THR A 11 94.33 -44.43 REMARK 500 1 SER A 13 175.09 -50.33 REMARK 500 1 ASP A 14 100.94 -42.97 REMARK 500 1 ALA A 16 96.80 -58.56 REMARK 500 1 LEU A 17 93.11 -9.44 REMARK 500 1 GLU A 27 -78.24 -127.16 REMARK 500 1 PRO A 31 35.01 -87.78 REMARK 500 1 GLU A 32 -73.47 -110.73 REMARK 500 1 SER A 36 -158.98 -106.54 REMARK 500 1 GLU A 46 74.72 -109.52 REMARK 500 1 ASN A 56 88.98 -36.64 REMARK 500 2 GLU A 10 163.64 -49.64 REMARK 500 2 ASP A 14 97.08 -64.04 REMARK 500 2 GLU A 27 -70.25 -132.35 REMARK 500 2 ALA A 30 170.79 -37.44 REMARK 500 2 LEU A 35 -168.83 -126.25 REMARK 500 2 SER A 36 -162.15 -105.63 REMARK 500 2 GLU A 46 71.49 -108.35 REMARK 500 2 PRO A 48 -4.97 -49.19 REMARK 500 2 ASN A 56 88.61 -35.13 REMARK 500 3 ARG A 9 177.07 -47.17 REMARK 500 3 GLU A 10 119.34 -31.92 REMARK 500 3 SER A 12 178.00 -42.55 REMARK 500 3 SER A 13 168.45 -46.45 REMARK 500 3 ASP A 14 99.41 -49.59 REMARK 500 3 LEU A 17 97.08 -164.97 REMARK 500 3 GLU A 27 -74.98 -131.03 REMARK 500 3 PRO A 31 32.79 -84.79 REMARK 500 3 GLU A 32 -71.66 -108.27 REMARK 500 3 SER A 36 -160.56 -109.23 REMARK 500 3 GLU A 46 71.83 -110.37 REMARK 500 3 PRO A 48 0.59 -48.74 REMARK 500 3 ASN A 56 89.94 -36.21 REMARK 500 4 LEU A 17 96.50 -163.88 REMARK 500 4 GLU A 27 -75.92 -122.90 REMARK 500 4 PRO A 31 40.73 -69.51 REMARK 500 4 GLU A 32 -74.68 -112.22 REMARK 500 4 SER A 36 -158.64 -106.54 REMARK 500 4 GLU A 46 72.80 -104.32 REMARK 500 4 ASP A 47 171.29 -57.07 REMARK 500 4 ASN A 56 86.16 -30.46 REMARK 500 4 LEU A 86 88.98 -63.50 REMARK 500 5 SER A 12 91.00 -47.56 REMARK 500 5 ASP A 14 -157.81 -82.53 REMARK 500 5 VAL A 15 85.76 -64.61 REMARK 500 5 LEU A 17 90.45 -24.66 REMARK 500 5 GLU A 27 -79.01 -122.89 REMARK 500 5 PRO A 31 33.08 -88.99 REMARK 500 5 GLU A 32 -70.43 -111.27 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KOY RELATED DB: PDB REMARK 900 1KOY CONTAINS THE SAME PROTEIN STRUCTURE OF THE LOWEST ENERGY REMARK 900 RELATED ID: 5408 RELATED DB: BMRB REMARK 900 5408 CONTAINS THE CHEMICAL SHIFTS REMARK 900 RELATED ID: SRZ001000055.1 RELATED DB: TARGETDB DBREF 1IYR A 5 111 UNP O00273 DFFA_HUMAN 225 331 SEQADV 1IYR GLY A 1 UNP O00273 CLONING ARTIFACT SEQADV 1IYR SER A 2 UNP O00273 CLONING ARTIFACT SEQADV 1IYR HIS A 3 UNP O00273 CLONING ARTIFACT SEQADV 1IYR MET A 4 UNP O00273 CLONING ARTIFACT SEQRES 1 A 111 GLY SER HIS MET THR GLY ILE SER ARG GLU THR SER SER SEQRES 2 A 111 ASP VAL ALA LEU ALA SER HIS ILE LEU THR ALA LEU ARG SEQRES 3 A 111 GLU LYS GLN ALA PRO GLU LEU SER LEU SER SER GLN ASP SEQRES 4 A 111 LEU GLU LEU VAL THR LYS GLU ASP PRO LYS ALA LEU ALA SEQRES 5 A 111 VAL ALA LEU ASN TRP ASP ILE LYS LYS THR GLU THR VAL SEQRES 6 A 111 GLN GLU ALA CYS GLU ARG GLU LEU ALA LEU ARG LEU GLN SEQRES 7 A 111 GLN THR GLN SER LEU HIS SER LEU ARG SER ILE SER ALA SEQRES 8 A 111 SER LYS ALA SER PRO PRO GLY ASP LEU GLN ASN PRO LYS SEQRES 9 A 111 ARG ALA ARG GLN ASP PRO THR HELIX 1 1 ALA A 18 GLU A 27 1 10 HELIX 2 2 SER A 36 LYS A 45 1 10 HELIX 3 3 ASP A 47 LEU A 55 1 9 HELIX 4 4 ASP A 58 GLN A 78 1 21 HELIX 5 5 GLN A 79 GLN A 81 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1