HEADER DNA BINDING PROTEIN 18-SEP-02 1IZ1 TITLE CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR-TYPE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, P, Q; COMPND 4 SYNONYM: CBNR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR; SOURCE 3 ORGANISM_TAXID: 106590; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LONG ALPHA HELIX CONNECTING DNA BINDING AND REGULATORY DOMAINS, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MURAOKA,R.OKUMURA,N.OGAWA,K.MIYASHITA,T.SENDA REVDAT 4 25-OCT-23 1IZ1 1 REMARK REVDAT 3 24-FEB-09 1IZ1 1 VERSN REVDAT 2 23-SEP-03 1IZ1 1 REMARK REVDAT 1 06-MAY-03 1IZ1 0 JRNL AUTH S.MURAOKA,R.OKUMURA,N.OGAWA,T.NONAKA,K.MIYASHITA,T.SENDA JRNL TITL CRYSTAL STRUCTURE OF A FULL-LENGTH LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR, CBNR: UNUSUAL COMBINATION OF TWO SUBUNIT FORMS JRNL TITL 3 AND MOLECULAR BASES FOR CAUSING AND CHANGING DNA BEND JRNL REF J.MOL.BIOL. V. 328 555 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12706716 JRNL DOI 10.1016/S0022-2836(03)00312-7 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 44422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.607 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9161 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 8866 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12394 ; 1.441 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20379 ; 0.819 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1166 ; 6.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1426 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10214 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2010 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1837 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 9877 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 6037 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 97 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5826 ; 0.624 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9336 ; 1.177 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3335 ; 1.568 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3058 ; 2.820 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000005425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : FIXED-EXIT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM SULFATE, SODIUM CHLORIDE, REMARK 280 TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.63550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.40900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.23850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.40900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.63550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.23850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 293 REMARK 465 ASP A 294 REMARK 465 LYS P 293 REMARK 465 ASP P 294 REMARK 465 LYS Q 293 REMARK 465 ASP Q 294 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 67 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 80 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 204 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP P 80 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP Q 80 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP Q 89 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 104 -43.96 -170.39 REMARK 500 SER A 146 -154.60 -170.05 REMARK 500 GLU A 275 -96.06 -89.06 REMARK 500 ARG A 289 -47.88 -24.78 REMARK 500 SER B 51 -126.00 -133.30 REMARK 500 ARG B 104 -58.24 -157.18 REMARK 500 SER B 146 -157.57 -162.95 REMARK 500 ILE B 160 -62.38 -90.88 REMARK 500 ARG B 221 149.58 -176.66 REMARK 500 GLU B 275 -82.22 -73.31 REMARK 500 SER P 51 -155.47 -111.68 REMARK 500 HIS P 52 -62.52 -91.93 REMARK 500 ARG P 53 38.18 -87.40 REMARK 500 ILE P 55 119.08 -170.15 REMARK 500 ARG P 104 -62.22 -160.58 REMARK 500 THR P 117 74.22 -151.14 REMARK 500 SER P 146 -156.74 -164.09 REMARK 500 ARG P 147 -63.18 -106.07 REMARK 500 ALA P 238 148.42 -170.66 REMARK 500 GLU P 275 -70.38 -64.26 REMARK 500 HIS Q 26 67.33 64.21 REMARK 500 VAL Q 27 -69.71 -129.97 REMARK 500 SER Q 28 172.33 134.19 REMARK 500 SER Q 51 -166.94 -78.58 REMARK 500 THR Q 58 -176.23 -68.63 REMARK 500 ARG Q 104 -71.22 -158.03 REMARK 500 THR Q 262 -178.44 56.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY P 198 ARG P 199 -147.15 REMARK 500 GLY Q 261 THR Q 262 142.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IXC RELATED DB: PDB REMARK 900 1IXC CONTAINS CRYSTAL STRUCTURE OF THE SAME PROTEIN WITH REMARK 900 SELENOMETHIONINE DBREF 1IZ1 A 1 294 UNP Q9WXC7 Q9WXC7_ALCEU 1 294 DBREF 1IZ1 B 1 294 UNP Q9WXC7 Q9WXC7_ALCEU 1 294 DBREF 1IZ1 P 1 294 UNP Q9WXC7 Q9WXC7_ALCEU 1 294 DBREF 1IZ1 Q 1 294 UNP Q9WXC7 Q9WXC7_ALCEU 1 294 SEQRES 1 A 294 MET GLU PHE ARG GLN LEU LYS TYR PHE ILE ALA VAL ALA SEQRES 2 A 294 GLU ALA GLY ASN MET ALA ALA ALA ALA LYS ARG LEU HIS SEQRES 3 A 294 VAL SER GLN PRO PRO ILE THR ARG GLN MET GLN ALA LEU SEQRES 4 A 294 GLU ALA ASP LEU GLY VAL VAL LEU LEU GLU ARG SER HIS SEQRES 5 A 294 ARG GLY ILE GLU LEU THR ALA ALA GLY HIS ALA PHE LEU SEQRES 6 A 294 GLU ASP ALA ARG ARG ILE LEU GLU LEU ALA GLY ARG SER SEQRES 7 A 294 GLY ASP ARG SER ARG ALA ALA ALA ARG GLY ASP VAL GLY SEQRES 8 A 294 GLU LEU SER VAL ALA TYR PHE GLY THR PRO ILE TYR ARG SEQRES 9 A 294 SER LEU PRO LEU LEU LEU ARG ALA PHE LEU THR SER THR SEQRES 10 A 294 PRO THR ALA THR VAL SER LEU THR HIS MET THR LYS ASP SEQRES 11 A 294 GLU GLN VAL GLU GLY LEU LEU ALA GLY THR ILE HIS VAL SEQRES 12 A 294 GLY PHE SER ARG PHE PHE PRO ARG HIS PRO GLY ILE GLU SEQRES 13 A 294 ILE VAL ASN ILE ALA GLN GLU ASP LEU TYR LEU ALA VAL SEQRES 14 A 294 HIS ARG SER GLN SER GLY LYS PHE GLY LYS THR CYS LYS SEQRES 15 A 294 LEU ALA ASP LEU ARG ALA VAL GLU LEU THR LEU PHE PRO SEQRES 16 A 294 ARG GLY GLY ARG PRO SER PHE ALA ASP GLU VAL ILE GLY SEQRES 17 A 294 LEU PHE LYS HIS ALA GLY ILE GLU PRO ARG ILE ALA ARG SEQRES 18 A 294 VAL VAL GLU ASP ALA THR ALA ALA LEU ALA LEU THR MET SEQRES 19 A 294 ALA GLY ALA ALA SER SER ILE VAL PRO ALA SER VAL ALA SEQRES 20 A 294 ALA ILE ARG TRP PRO ASP ILE ALA PHE ALA ARG ILE VAL SEQRES 21 A 294 GLY THR ARG VAL LYS VAL PRO ILE SER CYS ILE PHE ARG SEQRES 22 A 294 LYS GLU LYS GLN PRO PRO ILE LEU ALA ARG PHE VAL GLU SEQRES 23 A 294 HIS VAL ARG ARG SER ALA LYS ASP SEQRES 1 B 294 MET GLU PHE ARG GLN LEU LYS TYR PHE ILE ALA VAL ALA SEQRES 2 B 294 GLU ALA GLY ASN MET ALA ALA ALA ALA LYS ARG LEU HIS SEQRES 3 B 294 VAL SER GLN PRO PRO ILE THR ARG GLN MET GLN ALA LEU SEQRES 4 B 294 GLU ALA ASP LEU GLY VAL VAL LEU LEU GLU ARG SER HIS SEQRES 5 B 294 ARG GLY ILE GLU LEU THR ALA ALA GLY HIS ALA PHE LEU SEQRES 6 B 294 GLU ASP ALA ARG ARG ILE LEU GLU LEU ALA GLY ARG SER SEQRES 7 B 294 GLY ASP ARG SER ARG ALA ALA ALA ARG GLY ASP VAL GLY SEQRES 8 B 294 GLU LEU SER VAL ALA TYR PHE GLY THR PRO ILE TYR ARG SEQRES 9 B 294 SER LEU PRO LEU LEU LEU ARG ALA PHE LEU THR SER THR SEQRES 10 B 294 PRO THR ALA THR VAL SER LEU THR HIS MET THR LYS ASP SEQRES 11 B 294 GLU GLN VAL GLU GLY LEU LEU ALA GLY THR ILE HIS VAL SEQRES 12 B 294 GLY PHE SER ARG PHE PHE PRO ARG HIS PRO GLY ILE GLU SEQRES 13 B 294 ILE VAL ASN ILE ALA GLN GLU ASP LEU TYR LEU ALA VAL SEQRES 14 B 294 HIS ARG SER GLN SER GLY LYS PHE GLY LYS THR CYS LYS SEQRES 15 B 294 LEU ALA ASP LEU ARG ALA VAL GLU LEU THR LEU PHE PRO SEQRES 16 B 294 ARG GLY GLY ARG PRO SER PHE ALA ASP GLU VAL ILE GLY SEQRES 17 B 294 LEU PHE LYS HIS ALA GLY ILE GLU PRO ARG ILE ALA ARG SEQRES 18 B 294 VAL VAL GLU ASP ALA THR ALA ALA LEU ALA LEU THR MET SEQRES 19 B 294 ALA GLY ALA ALA SER SER ILE VAL PRO ALA SER VAL ALA SEQRES 20 B 294 ALA ILE ARG TRP PRO ASP ILE ALA PHE ALA ARG ILE VAL SEQRES 21 B 294 GLY THR ARG VAL LYS VAL PRO ILE SER CYS ILE PHE ARG SEQRES 22 B 294 LYS GLU LYS GLN PRO PRO ILE LEU ALA ARG PHE VAL GLU SEQRES 23 B 294 HIS VAL ARG ARG SER ALA LYS ASP SEQRES 1 P 294 MET GLU PHE ARG GLN LEU LYS TYR PHE ILE ALA VAL ALA SEQRES 2 P 294 GLU ALA GLY ASN MET ALA ALA ALA ALA LYS ARG LEU HIS SEQRES 3 P 294 VAL SER GLN PRO PRO ILE THR ARG GLN MET GLN ALA LEU SEQRES 4 P 294 GLU ALA ASP LEU GLY VAL VAL LEU LEU GLU ARG SER HIS SEQRES 5 P 294 ARG GLY ILE GLU LEU THR ALA ALA GLY HIS ALA PHE LEU SEQRES 6 P 294 GLU ASP ALA ARG ARG ILE LEU GLU LEU ALA GLY ARG SER SEQRES 7 P 294 GLY ASP ARG SER ARG ALA ALA ALA ARG GLY ASP VAL GLY SEQRES 8 P 294 GLU LEU SER VAL ALA TYR PHE GLY THR PRO ILE TYR ARG SEQRES 9 P 294 SER LEU PRO LEU LEU LEU ARG ALA PHE LEU THR SER THR SEQRES 10 P 294 PRO THR ALA THR VAL SER LEU THR HIS MET THR LYS ASP SEQRES 11 P 294 GLU GLN VAL GLU GLY LEU LEU ALA GLY THR ILE HIS VAL SEQRES 12 P 294 GLY PHE SER ARG PHE PHE PRO ARG HIS PRO GLY ILE GLU SEQRES 13 P 294 ILE VAL ASN ILE ALA GLN GLU ASP LEU TYR LEU ALA VAL SEQRES 14 P 294 HIS ARG SER GLN SER GLY LYS PHE GLY LYS THR CYS LYS SEQRES 15 P 294 LEU ALA ASP LEU ARG ALA VAL GLU LEU THR LEU PHE PRO SEQRES 16 P 294 ARG GLY GLY ARG PRO SER PHE ALA ASP GLU VAL ILE GLY SEQRES 17 P 294 LEU PHE LYS HIS ALA GLY ILE GLU PRO ARG ILE ALA ARG SEQRES 18 P 294 VAL VAL GLU ASP ALA THR ALA ALA LEU ALA LEU THR MET SEQRES 19 P 294 ALA GLY ALA ALA SER SER ILE VAL PRO ALA SER VAL ALA SEQRES 20 P 294 ALA ILE ARG TRP PRO ASP ILE ALA PHE ALA ARG ILE VAL SEQRES 21 P 294 GLY THR ARG VAL LYS VAL PRO ILE SER CYS ILE PHE ARG SEQRES 22 P 294 LYS GLU LYS GLN PRO PRO ILE LEU ALA ARG PHE VAL GLU SEQRES 23 P 294 HIS VAL ARG ARG SER ALA LYS ASP SEQRES 1 Q 294 MET GLU PHE ARG GLN LEU LYS TYR PHE ILE ALA VAL ALA SEQRES 2 Q 294 GLU ALA GLY ASN MET ALA ALA ALA ALA LYS ARG LEU HIS SEQRES 3 Q 294 VAL SER GLN PRO PRO ILE THR ARG GLN MET GLN ALA LEU SEQRES 4 Q 294 GLU ALA ASP LEU GLY VAL VAL LEU LEU GLU ARG SER HIS SEQRES 5 Q 294 ARG GLY ILE GLU LEU THR ALA ALA GLY HIS ALA PHE LEU SEQRES 6 Q 294 GLU ASP ALA ARG ARG ILE LEU GLU LEU ALA GLY ARG SER SEQRES 7 Q 294 GLY ASP ARG SER ARG ALA ALA ALA ARG GLY ASP VAL GLY SEQRES 8 Q 294 GLU LEU SER VAL ALA TYR PHE GLY THR PRO ILE TYR ARG SEQRES 9 Q 294 SER LEU PRO LEU LEU LEU ARG ALA PHE LEU THR SER THR SEQRES 10 Q 294 PRO THR ALA THR VAL SER LEU THR HIS MET THR LYS ASP SEQRES 11 Q 294 GLU GLN VAL GLU GLY LEU LEU ALA GLY THR ILE HIS VAL SEQRES 12 Q 294 GLY PHE SER ARG PHE PHE PRO ARG HIS PRO GLY ILE GLU SEQRES 13 Q 294 ILE VAL ASN ILE ALA GLN GLU ASP LEU TYR LEU ALA VAL SEQRES 14 Q 294 HIS ARG SER GLN SER GLY LYS PHE GLY LYS THR CYS LYS SEQRES 15 Q 294 LEU ALA ASP LEU ARG ALA VAL GLU LEU THR LEU PHE PRO SEQRES 16 Q 294 ARG GLY GLY ARG PRO SER PHE ALA ASP GLU VAL ILE GLY SEQRES 17 Q 294 LEU PHE LYS HIS ALA GLY ILE GLU PRO ARG ILE ALA ARG SEQRES 18 Q 294 VAL VAL GLU ASP ALA THR ALA ALA LEU ALA LEU THR MET SEQRES 19 Q 294 ALA GLY ALA ALA SER SER ILE VAL PRO ALA SER VAL ALA SEQRES 20 Q 294 ALA ILE ARG TRP PRO ASP ILE ALA PHE ALA ARG ILE VAL SEQRES 21 Q 294 GLY THR ARG VAL LYS VAL PRO ILE SER CYS ILE PHE ARG SEQRES 22 Q 294 LYS GLU LYS GLN PRO PRO ILE LEU ALA ARG PHE VAL GLU SEQRES 23 Q 294 HIS VAL ARG ARG SER ALA LYS ASP FORMUL 5 HOH *115(H2 O) HELIX 1 1 GLU A 2 GLY A 16 1 15 HELIX 2 2 ASN A 17 LEU A 25 1 9 HELIX 3 3 GLN A 29 GLY A 44 1 16 HELIX 4 4 THR A 58 ALA A 86 1 29 HELIX 5 5 GLY A 99 TYR A 103 5 5 HELIX 6 6 ARG A 104 THR A 117 1 14 HELIX 7 7 THR A 128 ALA A 138 1 11 HELIX 8 8 SER A 172 PHE A 177 5 6 HELIX 9 9 LYS A 182 ARG A 187 5 6 HELIX 10 10 SER A 201 ALA A 213 1 13 HELIX 11 11 ASP A 225 ALA A 235 1 11 HELIX 12 12 ALA A 244 ALA A 248 1 5 HELIX 13 13 PRO A 278 ALA A 292 1 15 HELIX 14 14 GLU B 2 GLY B 16 1 15 HELIX 15 15 ASN B 17 HIS B 26 1 10 HELIX 16 16 SER B 28 GLY B 44 1 17 HELIX 17 17 THR B 58 GLY B 88 1 31 HELIX 18 18 GLY B 99 TYR B 103 5 5 HELIX 19 19 ARG B 104 THR B 117 1 14 HELIX 20 20 THR B 128 ALA B 138 1 11 HELIX 21 21 SER B 172 PHE B 177 5 6 HELIX 22 22 LYS B 182 ARG B 187 5 6 HELIX 23 23 SER B 201 GLY B 214 1 14 HELIX 24 24 ASP B 225 ALA B 235 1 11 HELIX 25 25 ALA B 244 ILE B 249 1 6 HELIX 26 26 PRO B 278 ALA B 292 1 15 HELIX 27 27 GLU P 2 GLY P 16 1 15 HELIX 28 28 ASN P 17 HIS P 26 1 10 HELIX 29 29 SER P 28 GLY P 44 1 17 HELIX 30 30 THR P 58 ARG P 87 1 30 HELIX 31 31 GLY P 99 TYR P 103 5 5 HELIX 32 32 ARG P 104 SER P 116 1 13 HELIX 33 33 THR P 128 GLY P 139 1 12 HELIX 34 34 GLN P 173 GLY P 178 1 6 HELIX 35 35 LYS P 182 ARG P 187 5 6 HELIX 36 36 SER P 201 ALA P 213 1 13 HELIX 37 37 ASP P 225 ALA P 235 1 11 HELIX 38 38 ALA P 244 ALA P 248 1 5 HELIX 39 39 PRO P 278 ARG P 290 1 13 HELIX 40 40 GLU Q 2 GLY Q 16 1 15 HELIX 41 41 ASN Q 17 HIS Q 26 1 10 HELIX 42 42 GLN Q 29 GLY Q 44 1 16 HELIX 43 43 THR Q 58 GLY Q 88 1 31 HELIX 44 44 GLY Q 99 TYR Q 103 5 5 HELIX 45 45 ARG Q 104 THR Q 117 1 14 HELIX 46 46 THR Q 128 ALA Q 138 1 11 HELIX 47 47 SER Q 172 PHE Q 177 5 6 HELIX 48 48 LYS Q 182 ARG Q 187 5 6 HELIX 49 49 SER Q 201 GLY Q 214 1 14 HELIX 50 50 ASP Q 225 ALA Q 235 1 11 HELIX 51 51 ALA Q 244 ALA Q 248 1 5 HELIX 52 52 PRO Q 278 ALA Q 292 1 15 SHEET 1 A 2 LEU A 48 SER A 51 0 SHEET 2 A 2 GLY A 54 LEU A 57 -1 O GLU A 56 N GLU A 49 SHEET 1 B 8 ALA A 120 HIS A 126 0 SHEET 2 B 8 GLY A 91 TYR A 97 1 N LEU A 93 O THR A 121 SHEET 3 B 8 VAL A 143 SER A 146 1 O VAL A 143 N ALA A 96 SHEET 4 B 8 LYS A 265 ARG A 273 -1 O SER A 269 N SER A 146 SHEET 5 B 8 ILE A 155 HIS A 170 -1 N GLU A 163 O VAL A 266 SHEET 6 B 8 SER A 239 PRO A 243 -1 O VAL A 242 N TYR A 166 SHEET 7 B 8 LEU A 191 LEU A 193 1 N THR A 192 O SER A 239 SHEET 8 B 8 ILE A 219 VAL A 222 1 O ALA A 220 N LEU A 191 SHEET 1 C 7 ALA A 120 HIS A 126 0 SHEET 2 C 7 GLY A 91 TYR A 97 1 N LEU A 93 O THR A 121 SHEET 3 C 7 VAL A 143 SER A 146 1 O VAL A 143 N ALA A 96 SHEET 4 C 7 LYS A 265 ARG A 273 -1 O SER A 269 N SER A 146 SHEET 5 C 7 ILE A 155 HIS A 170 -1 N GLU A 163 O VAL A 266 SHEET 6 C 7 ILE A 254 ILE A 259 -1 O ALA A 255 N VAL A 169 SHEET 7 C 7 THR A 180 CYS A 181 1 N CYS A 181 O ARG A 258 SHEET 1 D 2 LEU B 48 ARG B 50 0 SHEET 2 D 2 ILE B 55 LEU B 57 -1 O GLU B 56 N GLU B 49 SHEET 1 E 8 ALA B 120 HIS B 126 0 SHEET 2 E 8 GLY B 91 TYR B 97 1 N LEU B 93 O THR B 121 SHEET 3 E 8 VAL B 143 SER B 146 1 O VAL B 143 N ALA B 96 SHEET 4 E 8 LYS B 265 ARG B 273 -1 O SER B 269 N SER B 146 SHEET 5 E 8 ILE B 155 HIS B 170 -1 N GLU B 156 O PHE B 272 SHEET 6 E 8 SER B 239 PRO B 243 -1 O SER B 240 N ALA B 168 SHEET 7 E 8 GLU B 190 LEU B 193 1 N THR B 192 O SER B 239 SHEET 8 E 8 ARG B 218 VAL B 222 1 O ARG B 218 N LEU B 191 SHEET 1 F 7 ALA B 120 HIS B 126 0 SHEET 2 F 7 GLY B 91 TYR B 97 1 N LEU B 93 O THR B 121 SHEET 3 F 7 VAL B 143 SER B 146 1 O VAL B 143 N ALA B 96 SHEET 4 F 7 LYS B 265 ARG B 273 -1 O SER B 269 N SER B 146 SHEET 5 F 7 ILE B 155 HIS B 170 -1 N GLU B 156 O PHE B 272 SHEET 6 F 7 ILE B 254 ILE B 259 -1 O ALA B 257 N LEU B 167 SHEET 7 F 7 THR B 180 CYS B 181 1 N CYS B 181 O ARG B 258 SHEET 1 G 2 LEU P 48 GLU P 49 0 SHEET 2 G 2 GLU P 56 LEU P 57 -1 O GLU P 56 N GLU P 49 SHEET 1 H 6 THR P 121 HIS P 126 0 SHEET 2 H 6 GLU P 92 TYR P 97 1 N LEU P 93 O SER P 123 SHEET 3 H 6 VAL P 143 SER P 146 1 O PHE P 145 N ALA P 96 SHEET 4 H 6 LYS P 265 ARG P 273 -1 O SER P 269 N SER P 146 SHEET 5 H 6 ILE P 155 HIS P 170 -1 N VAL P 158 O CYS P 270 SHEET 6 H 6 SER P 240 PRO P 243 -1 O SER P 240 N ALA P 168 SHEET 1 I 7 THR P 121 HIS P 126 0 SHEET 2 I 7 GLU P 92 TYR P 97 1 N LEU P 93 O SER P 123 SHEET 3 I 7 VAL P 143 SER P 146 1 O PHE P 145 N ALA P 96 SHEET 4 I 7 LYS P 265 ARG P 273 -1 O SER P 269 N SER P 146 SHEET 5 I 7 ILE P 155 HIS P 170 -1 N VAL P 158 O CYS P 270 SHEET 6 I 7 ILE P 254 ILE P 259 -1 O ALA P 257 N LEU P 167 SHEET 7 I 7 THR P 180 CYS P 181 1 N CYS P 181 O ARG P 258 SHEET 1 J 2 LEU P 191 LEU P 193 0 SHEET 2 J 2 ILE P 219 VAL P 222 1 O ARG P 221 N LEU P 193 SHEET 1 K 2 LEU Q 48 GLU Q 49 0 SHEET 2 K 2 GLU Q 56 LEU Q 57 -1 O GLU Q 56 N GLU Q 49 SHEET 1 L 2 GLY Q 91 TYR Q 97 0 SHEET 2 L 2 ALA Q 120 HIS Q 126 1 O THR Q 121 N LEU Q 93 SHEET 1 M 3 GLY Q 144 SER Q 146 0 SHEET 2 M 3 VAL Q 266 ARG Q 273 -1 O SER Q 269 N SER Q 146 SHEET 3 M 3 ILE Q 155 GLU Q 163 -1 N GLU Q 156 O PHE Q 272 SHEET 1 N 6 THR Q 180 CYS Q 181 0 SHEET 2 N 6 ILE Q 254 ILE Q 259 1 O ARG Q 258 N CYS Q 181 SHEET 3 N 6 LEU Q 165 HIS Q 170 -1 N LEU Q 165 O ILE Q 259 SHEET 4 N 6 SER Q 239 PRO Q 243 -1 O SER Q 240 N ALA Q 168 SHEET 5 N 6 GLU Q 190 LEU Q 193 1 N THR Q 192 O SER Q 239 SHEET 6 N 6 ARG Q 218 VAL Q 222 1 O ARG Q 221 N LEU Q 193 CISPEP 1 PHE A 194 PRO A 195 0 -9.20 CISPEP 2 ARG A 199 PRO A 200 0 -3.03 CISPEP 3 PHE B 194 PRO B 195 0 -16.59 CISPEP 4 ARG B 199 PRO B 200 0 -19.91 CISPEP 5 PHE P 194 PRO P 195 0 -15.14 CISPEP 6 ARG P 199 PRO P 200 0 3.51 CISPEP 7 PHE Q 194 PRO Q 195 0 -11.43 CISPEP 8 ARG Q 199 PRO Q 200 0 -1.62 CRYST1 65.271 124.477 166.818 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005995 0.00000