HEADER HYDROLASE 30-SEP-02 1IZ8 TITLE RE-REFINEMENT OF THE STRUCTURE OF HYDROLYTIC HALOALKANE DEHALOGENASE TITLE 2 LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH 1,3-PROPANEDIOL, A TITLE 3 PRODUCT OF DEBROMIDATION OF DIBROMPROPANE, AT 2.0A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKANE DEHALOGENASE, LINB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE; COMPND 5 EC: 3.8.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: UT26; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMYLB1 KEYWDS DEHALOGENASE, LINDANE, BIODEGRADATION, ALPHA/BETA-HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.A.STRELTSOV REVDAT 7 27-DEC-23 1IZ8 1 REMARK LINK REVDAT 6 20-DEC-17 1IZ8 1 REMARK REVDAT 5 10-AUG-11 1IZ8 1 REMARK REVDAT 4 27-MAY-08 1IZ8 1 REMARK VERSN REVDAT 3 10-FEB-04 1IZ8 1 JRNL REVDAT 2 26-AUG-03 1IZ8 1 JRNL REVDAT 1 16-OCT-02 1IZ8 0 JRNL AUTH V.A.STRELTSOV,Z.PROKOP,J.DAMBORSKY,Y.NAGATA,A.OAKLEY, JRNL AUTH 2 M.C.J.WILCE JRNL TITL HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS JRNL TITL 2 UT26: X-RAY CRYSTALLOGRAPHIC STUDIES OF DEHALOGENATION OF JRNL TITL 3 BROMINATED SUBSTRATES JRNL REF BIOCHEMISTRY V. 42 10104 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12939138 JRNL DOI 10.1021/BI027280A REMARK 0 REMARK 0 THIS ENTRY 1IZ8 REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 STRUCTURAL DATA IN R1D07SF, IN PDB ENTRY 1IZ8 INFORMATION IN REMARK 0 REMARK 200 SERIES IS BASED ON THE EXPERIMENT DESCRIBED IN PDB REMARK 0 ENTRY 1D07 ORIGINAL DATA DETERMINED BY AUTHOR: J.MAREK, REMARK 0 J.VEVODOVA,I.SMATANOVA,Y.NAGATA,L.A.SVENSSON,J.NEWMAN,M.TAKAGI, REMARK 0 J.DAMBORSKY REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MAREK,J.VEVODOVA,I.SMATANOVA,Y.NAGATA,L.A.SVENSSON, REMARK 1 AUTH 2 J.NEWMAN,M.TAKAGI,J.DAMBORSKY REMARK 1 TITL CRYSTAL STRUCTURE OF THE HALOALKANE DEHALOGENASE FROM REMARK 1 TITL 2 SPHINGOMONAS PAUCIMOBILIS UT26 REMARK 1 REF BIOCHEMISTRY V. 39 14082 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI001539C REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1958543.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.0 REMARK 3 NUMBER OF REFLECTIONS : 14610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 4 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3070 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 264 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -3.36000 REMARK 3 B33 (A**2) : 3.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.44 REMARK 3 BSOL : 122.8 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : PDO.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : PDO.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000005432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1D07. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.11350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.86050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.11350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.86050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A2003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1291 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1316 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1332 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 25 O HOH A 1356 1.96 REMARK 500 O ASN A 167 O HOH A 1328 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 20 102.40 74.48 REMARK 500 ASP A 97 74.03 43.41 REMARK 500 ASP A 108 -118.86 45.14 REMARK 500 GLU A 132 58.27 34.68 REMARK 500 ARG A 155 32.72 -93.28 REMARK 500 ALA A 247 -75.31 -149.45 REMARK 500 ALA A 271 -91.30 -101.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD2 REMARK 620 2 ASP A 149 OD1 41.6 REMARK 620 3 GLN A 152 OE1 100.7 132.0 REMARK 620 4 GLU A 233 OE1 118.4 83.2 140.8 REMARK 620 5 HOH A1003 O 136.2 121.6 59.1 89.7 REMARK 620 6 HOH A1117 O 155.0 156.2 71.1 73.0 60.7 REMARK 620 7 HOH A1276 O 68.2 95.6 92.5 101.5 142.3 88.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 165 OE1 REMARK 620 2 ASP A 166 OD1 96.2 REMARK 620 3 ASP A 166 OD2 102.8 50.1 REMARK 620 4 PRO A 175 O 167.6 81.8 85.4 REMARK 620 5 ILE A 178 O 88.9 142.2 162.6 85.4 REMARK 620 6 HOH A1007 O 91.3 127.5 77.5 99.7 89.5 REMARK 620 7 HOH A1028 O 84.5 64.8 114.9 83.6 78.6 167.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1231 O REMARK 620 2 HOH A1231 O 95.9 REMARK 620 3 HOH A1236 O 74.5 166.7 REMARK 620 4 HOH A1236 O 166.7 74.6 116.3 REMARK 620 5 HOH A1271 O 68.4 99.6 85.7 103.5 REMARK 620 6 HOH A1271 O 99.6 68.4 103.5 85.7 162.7 REMARK 620 7 HOH A1272 O 51.0 103.3 63.5 139.5 116.5 57.6 REMARK 620 8 HOH A1272 O 103.3 51.1 139.4 63.5 57.5 116.6 145.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CV2 RELATED DB: PDB REMARK 900 1CV2 CONTAINS THE SAME PROTEIN, DIFFERENT REFINEMENT MODEL REMARK 900 RELATED ID: 1D07 RELATED DB: PDB REMARK 900 1D07 CONTAINS THE SAME PROTEIN COMPLEXED WITH 1,3-PROPANEDIOL, A REMARK 900 PRODUCT OF DEBROMIDATION OF DIBROMPROPANE, DIFFERENT REFINEMENT REMARK 900 MODEL REMARK 900 RELATED ID: 1K5P RELATED DB: PDB REMARK 900 1K5P CONTAINS THE SAME PROTEIN, DIFFERENT CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1K63 RELATED DB: PDB REMARK 900 1K63 CONTAINS THE SAME PROTEIN COMPLEXED WITH 2-BROMO-2-PROPENE-1-OL REMARK 900 RELATED ID: 1K6E RELATED DB: PDB REMARK 900 1K6E CONTAINS THE SAME PROTEIN COMPLEX WITH 1,2-PROPANEDIOL, A REMARK 900 PRODUCT OF DEHALOGENATION OF 1,2-DIBROMOPROPANE REMARK 900 RELATED ID: 1IZ7 RELATED DB: PDB REMARK 900 1IZ7 CONTAINS PROTEIN LINB, STRUCTURE RE-REFINED FROM 1CV2 REMARK 900 RELATED ID: 1D07 RELATED DB: PDB REMARK 900 THIS ENTRY 1IZ8 REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA REMARK 900 R1D07SF. DBREF 1IZ8 A 2 296 UNP P51698 LINB_PSEPA 2 296 SEQRES 1 A 295 SER LEU GLY ALA LYS PRO PHE GLY GLU LYS LYS PHE ILE SEQRES 2 A 295 GLU ILE LYS GLY ARG ARG MET ALA TYR ILE ASP GLU GLY SEQRES 3 A 295 THR GLY ASP PRO ILE LEU PHE GLN HIS GLY ASN PRO THR SEQRES 4 A 295 SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS CYS ALA SEQRES 5 A 295 GLY LEU GLY ARG LEU ILE ALA CYS ASP LEU ILE GLY MET SEQRES 6 A 295 GLY ASP SER ASP LYS LEU ASP PRO SER GLY PRO GLU ARG SEQRES 7 A 295 TYR ALA TYR ALA GLU HIS ARG ASP TYR LEU ASP ALA LEU SEQRES 8 A 295 TRP GLU ALA LEU ASP LEU GLY ASP ARG VAL VAL LEU VAL SEQRES 9 A 295 VAL HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP ALA SEQRES 10 A 295 ARG ARG HIS ARG GLU ARG VAL GLN GLY ILE ALA TYR MET SEQRES 11 A 295 GLU ALA ILE ALA MET PRO ILE GLU TRP ALA ASP PHE PRO SEQRES 12 A 295 GLU GLN ASP ARG ASP LEU PHE GLN ALA PHE ARG SER GLN SEQRES 13 A 295 ALA GLY GLU GLU LEU VAL LEU GLN ASP ASN VAL PHE VAL SEQRES 14 A 295 GLU GLN VAL LEU PRO GLY LEU ILE LEU ARG PRO LEU SER SEQRES 15 A 295 GLU ALA GLU MET ALA ALA TYR ARG GLU PRO PHE LEU ALA SEQRES 16 A 295 ALA GLY GLU ALA ARG ARG PRO THR LEU SER TRP PRO ARG SEQRES 17 A 295 GLN ILE PRO ILE ALA GLY THR PRO ALA ASP VAL VAL ALA SEQRES 18 A 295 ILE ALA ARG ASP TYR ALA GLY TRP LEU SER GLU SER PRO SEQRES 19 A 295 ILE PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA LEU SEQRES 20 A 295 THR THR GLY ARG MET ARG ASP PHE CYS ARG THR TRP PRO SEQRES 21 A 295 ASN GLN THR GLU ILE THR VAL ALA GLY ALA HIS PHE ILE SEQRES 22 A 295 GLN GLU ASP SER PRO ASP GLU ILE GLY ALA ALA ILE ALA SEQRES 23 A 295 ALA PHE VAL ARG ARG LEU ARG PRO ALA HET BR A 1 1 HET CA A2002 1 HET CA A2003 1 HET CA A2004 1 HET PDO A2001 10 HETNAM BR BROMIDE ION HETNAM CA CALCIUM ION HETNAM PDO 1,3-PROPANDIOL FORMUL 2 BR BR 1- FORMUL 3 CA 3(CA 2+) FORMUL 6 PDO C3 H8 O2 FORMUL 7 HOH *310(H2 O) HELIX 1 1 SER A 41 ARG A 46 5 6 HELIX 2 2 ILE A 48 ALA A 53 5 6 HELIX 3 3 ALA A 81 LEU A 96 1 16 HELIX 4 4 ASP A 108 HIS A 121 1 14 HELIX 5 5 GLU A 139 PHE A 143 5 5 HELIX 6 6 PRO A 144 ARG A 155 1 12 HELIX 7 7 ALA A 158 LEU A 164 1 7 HELIX 8 8 ASN A 167 GLN A 172 1 6 HELIX 9 9 GLN A 172 LEU A 177 1 6 HELIX 10 10 SER A 183 GLU A 192 1 10 HELIX 11 11 PRO A 193 LEU A 195 5 3 HELIX 12 12 GLY A 198 ARG A 201 5 4 HELIX 13 13 ARG A 202 ILE A 211 1 10 HELIX 14 14 PRO A 217 SER A 234 1 18 HELIX 15 15 THR A 250 ARG A 258 1 9 HELIX 16 16 PHE A 273 ASP A 277 5 5 HELIX 17 17 SER A 278 ARG A 294 1 17 SHEET 1 A 8 LYS A 12 ILE A 14 0 SHEET 2 A 8 MET A 21 GLU A 26 -1 O TYR A 23 N LYS A 12 SHEET 3 A 8 ARG A 57 CYS A 61 -1 O LEU A 58 N GLU A 26 SHEET 4 A 8 PRO A 31 GLN A 35 1 N PHE A 34 O ILE A 59 SHEET 5 A 8 VAL A 102 HIS A 107 1 O VAL A 105 N LEU A 33 SHEET 6 A 8 VAL A 125 ALA A 133 1 O ALA A 129 N LEU A 104 SHEET 7 A 8 LYS A 238 PRO A 245 1 O ILE A 241 N TYR A 130 SHEET 8 A 8 GLN A 263 GLY A 270 1 O THR A 264 N PHE A 240 LINK OD2 ASP A 149 CA CA A2004 1555 1555 1.95 LINK OD1 ASP A 149 CA CA A2004 1555 1555 3.22 LINK OE1 GLN A 152 CA CA A2004 1555 1555 2.63 LINK OE1 GLN A 165 CA CA A2002 2655 1555 2.33 LINK OD1 ASP A 166 CA CA A2002 2655 1555 2.56 LINK OD2 ASP A 166 CA CA A2002 2655 1555 2.61 LINK O PRO A 175 CA CA A2002 1555 1555 2.39 LINK O ILE A 178 CA CA A2002 1555 1555 2.41 LINK OE1 GLU A 233 CA CA A2004 4556 1555 2.93 LINK O HOH A1003 CA CA A2004 1555 1555 1.96 LINK O HOH A1007 CA CA A2002 1555 1555 2.40 LINK O HOH A1028 CA CA A2002 1555 1555 2.41 LINK O HOH A1117 CA CA A2004 1555 1555 2.63 LINK O HOH A1231 CA CA A2003 1555 1555 2.29 LINK O HOH A1231 CA CA A2003 2565 1555 2.29 LINK O HOH A1236 CA CA A2003 1555 1555 2.16 LINK O HOH A1236 CA CA A2003 2565 1555 2.15 LINK O HOH A1271 CA CA A2003 1555 1555 2.04 LINK O HOH A1271 CA CA A2003 2565 1555 2.04 LINK O HOH A1272 CA CA A2003 1555 1555 2.83 LINK O HOH A1272 CA CA A2003 2565 1555 2.83 LINK O HOH A1276 CA CA A2004 1555 1555 2.30 CISPEP 1 ASN A 38 PRO A 39 0 -0.03 CISPEP 2 ASP A 73 PRO A 74 0 -0.17 CISPEP 3 THR A 216 PRO A 217 0 -0.18 CISPEP 4 GLU A 244 PRO A 245 0 0.36 SITE 1 AC1 4 ASN A 38 TRP A 109 PHE A 169 PRO A 208 SITE 1 AC2 6 GLN A 165 ASP A 166 PRO A 175 ILE A 178 SITE 2 AC2 6 HOH A1007 HOH A1028 SITE 1 AC3 4 HOH A1231 HOH A1236 HOH A1271 HOH A1272 SITE 1 AC4 6 ASP A 149 GLN A 152 GLU A 233 HOH A1003 SITE 2 AC4 6 HOH A1117 HOH A1276 SITE 1 AC5 8 ASP A 108 PHE A 143 PRO A 144 PHE A 151 SITE 2 AC5 8 LEU A 177 ALA A 247 HIS A 272 HOH A1274 CRYST1 50.227 71.721 73.319 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013639 0.00000