HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-OCT-02 1J03 TITLE SOLUTION STRUCTURE OF A PUTATIVE STEROID-BINDING PROTEIN FROM TITLE 2 ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE STEROID BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G24940; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P011011-02; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS SYSTEM KEYWDS ALPHA AND BETA, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,H.HATANAKA,T.KIGAWA,T.TERADA,M.SHIROUZU,M.SEKI,K.SHINOZAKI, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1J03 1 REMARK REVDAT 3 23-FEB-22 1J03 1 REMARK SEQADV REVDAT 2 24-FEB-09 1J03 1 VERSN REVDAT 1 16-DEC-03 1J03 0 JRNL AUTH S.SUZUKI,H.HATANAKA,T.KIGAWA,T.TERADA,M.SHIROUZU,M.SEKI, JRNL AUTH 2 K.SHINOZAKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF AN ARABIDOPSIS HOMOLOGUE OF THE JRNL TITL 2 MAMMALIAN MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CYANA 1.0.6 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J03 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000005461. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE, 100MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, CYANA 1.0.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 77 H LEU A 81 1.17 REMARK 500 O GLU A 85 H GLU A 89 1.40 REMARK 500 O VAL A 22 H PHE A 29 1.41 REMARK 500 O ILE A 78 H ASN A 82 1.47 REMARK 500 O THR A 4 H LEU A 8 1.50 REMARK 500 O GLU A 75 H ASN A 79 1.53 REMARK 500 H THR A 74 OE2 GLU A 77 1.56 REMARK 500 O PHE A 88 H TYR A 92 1.56 REMARK 500 HG1 THR A 14 OG SER A 40 1.58 REMARK 500 O THR A 80 H TRP A 84 1.60 REMARK 500 O GLU A 77 N LEU A 81 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 0 -160.88 -74.99 REMARK 500 1 GLU A 2 107.02 53.51 REMARK 500 1 THR A 14 -34.96 177.94 REMARK 500 1 ASP A 15 -171.20 -65.30 REMARK 500 1 LYS A 18 122.94 -37.88 REMARK 500 1 PRO A 19 -162.22 -74.94 REMARK 500 1 THR A 33 -9.11 -56.40 REMARK 500 1 SER A 40 124.74 -35.89 REMARK 500 1 TYR A 44 59.20 -104.57 REMARK 500 1 ALA A 52 52.57 -100.59 REMARK 500 1 LEU A 70 36.19 -89.43 REMARK 500 1 ALA A 90 31.79 -91.59 REMARK 500 1 LYS A 91 -60.18 -153.89 REMARK 500 1 VAL A 99 -83.82 -122.02 REMARK 500 2 PRO A 0 -161.31 -75.06 REMARK 500 2 GLU A 2 110.88 55.36 REMARK 500 2 ASP A 15 -159.06 -106.67 REMARK 500 2 LYS A 18 121.73 -37.19 REMARK 500 2 THR A 33 -8.99 -55.99 REMARK 500 2 SER A 40 140.02 -39.31 REMARK 500 2 TYR A 44 61.74 -102.47 REMARK 500 2 ALA A 52 59.98 -100.94 REMARK 500 2 LYS A 61 18.89 86.83 REMARK 500 2 VAL A 66 109.20 -35.64 REMARK 500 2 LEU A 70 49.63 -79.94 REMARK 500 2 GLU A 71 70.62 -113.06 REMARK 500 2 VAL A 99 -90.54 -128.05 REMARK 500 3 PRO A 0 -163.58 -74.93 REMARK 500 3 GLU A 2 108.84 54.33 REMARK 500 3 ASP A 15 -167.63 -110.66 REMARK 500 3 GLU A 16 -71.98 -99.79 REMARK 500 3 LYS A 18 122.21 -39.62 REMARK 500 3 PRO A 19 -168.98 -74.99 REMARK 500 3 THR A 33 -8.60 -55.66 REMARK 500 3 SER A 40 -154.47 -57.59 REMARK 500 3 MET A 59 38.09 73.91 REMARK 500 3 GLU A 71 94.63 -35.70 REMARK 500 3 LYS A 91 -68.94 -122.36 REMARK 500 3 VAL A 99 -88.29 -111.25 REMARK 500 4 PRO A 0 -161.65 -75.03 REMARK 500 4 GLU A 2 114.29 57.14 REMARK 500 4 THR A 14 -37.70 -179.68 REMARK 500 4 GLU A 16 -74.22 -96.24 REMARK 500 4 PRO A 19 -164.10 -74.99 REMARK 500 4 THR A 33 -8.68 -54.80 REMARK 500 4 SER A 40 123.94 -33.94 REMARK 500 4 TYR A 44 63.34 -110.71 REMARK 500 4 SER A 69 87.52 -154.93 REMARK 500 4 LEU A 70 -53.69 -22.48 REMARK 500 4 GLU A 71 41.57 26.96 REMARK 500 REMARK 500 THIS ENTRY HAS 264 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001011428.1 RELATED DB: TARGETDB DBREF 1J03 A 1 100 UNP Q9SK39 SBP3_ARATH 1 100 SEQADV 1J03 GLY A -1 UNP Q9SK39 CLONING ARTIFACT SEQADV 1J03 PRO A 0 UNP Q9SK39 CLONING ARTIFACT SEQRES 1 A 102 GLY PRO MET GLU PHE THR ALA GLU GLN LEU SER GLN TYR SEQRES 2 A 102 ASN GLY THR ASP GLU SER LYS PRO ILE TYR VAL ALA ILE SEQRES 3 A 102 LYS GLY ARG VAL PHE ASP VAL THR THR GLY LYS SER PHE SEQRES 4 A 102 TYR GLY SER GLY GLY ASP TYR SER MET PHE ALA GLY LYS SEQRES 5 A 102 ASP ALA SER ARG ALA LEU GLY LYS MET SER LYS ASN GLU SEQRES 6 A 102 GLU ASP VAL SER PRO SER LEU GLU GLY LEU THR GLU LYS SEQRES 7 A 102 GLU ILE ASN THR LEU ASN ASP TRP GLU THR LYS PHE GLU SEQRES 8 A 102 ALA LYS TYR PRO VAL VAL GLY ARG VAL VAL SER HELIX 1 1 THR A 4 SER A 9 1 6 HELIX 2 2 GLY A 34 GLY A 39 1 6 HELIX 3 3 ALA A 52 LYS A 58 1 7 HELIX 4 4 THR A 74 ALA A 90 1 17 SHEET 1 A 3 TYR A 21 ILE A 24 0 SHEET 2 A 3 ARG A 27 ASP A 30 -1 O PHE A 29 N VAL A 22 SHEET 3 A 3 VAL A 94 GLY A 96 -1 O GLY A 96 N VAL A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1