HEADER ELECTRON TRANSPORT 19-NOV-02 1J0P TITLE THREE DIMENSIONAL STRUCTURE OF THE Y43L MUTANT OF TETRAHEME CYTOCHROME TITLE 2 C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 881; SOURCE 4 EXPRESSION_SYSTEM: SHEWANELLA ONEIDENSIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 70863; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TSP-C; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKFC3K KEYWDS TETRAHEME CYTOCHROME C3, HIGH RESOLUTION X-RAY STRUCTURE, Y43L KEYWDS 2 MUTANT, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.OZAWA,F.YASUKAWA,J.KUMAGAI,T.OHMURA,M.A.CUSANVICH,Y.TOMIMOTO, AUTHOR 2 H.OGATA,Y.HIGUCHI,H.AKUTSU REVDAT 6 25-OCT-23 1J0P 1 REMARK REVDAT 5 10-NOV-21 1J0P 1 REMARK SEQADV LINK REVDAT 4 23-OCT-19 1J0P 1 JRNL LINK REVDAT 3 24-FEB-09 1J0P 1 VERSN REVDAT 2 23-MAR-04 1J0P 1 JRNL REVDAT 1 19-NOV-03 1J0P 0 JRNL AUTH K.OZAWA,Y.TAKAYAMA,F.YASUKAWA,T.OHMURA,M.A.CUSANOVICH, JRNL AUTH 2 Y.TOMIMOTO,H.OGATA,Y.HIGUCHI,H.AKUTSU JRNL TITL ROLE OF THE AROMATIC RING OF TYR43 IN TETRAHEME CYTOCHROME JRNL TITL 2 C(3) FROM DESULFOVIBRIO VULGARIS MIYAZAKI F. JRNL REF BIOPHYS.J. V. 85 3367 2003 JRNL REFN ISSN 0006-3495 JRNL PMID 14581238 JRNL DOI 10.1016/S0006-3495(03)74756-0 REMARK 2 REMARK 2 RESOLUTION. 0.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.106 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.102 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5786 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 81910 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.100 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 67354 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 233 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1393.9 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1019.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 2 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 13084 REMARK 3 NUMBER OF RESTRAINTS : 14462 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.028 REMARK 3 ANGLE DISTANCES (A) : 0.053 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.084 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.105 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.084 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.052 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.094 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000005483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82055 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.913 REMARK 200 RESOLUTION RANGE LOW (A) : 26.343 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2CDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, PH 7.4, SMALL TUBES, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.93400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.16400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.65450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 17.16400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.93400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.65450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 LYS A 29 CA - CB - CG ANGL. DEV. = 27.1 DEGREES REMARK 500 LYS A 29 CB - CG - CD ANGL. DEV. = 23.8 DEGREES REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 63.81 -118.86 REMARK 500 CYS A 51 -125.89 -109.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 HEM A1001 NA 91.1 REMARK 620 3 HEM A1001 NB 90.6 91.0 REMARK 620 4 HEM A1001 NC 90.1 178.7 89.2 REMARK 620 5 HEM A1001 ND 90.4 88.9 179.0 90.8 REMARK 620 6 HIS A 34 NE2 179.3 88.2 89.3 90.6 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 HEM A1003 NA 88.0 REMARK 620 3 HEM A1003 NB 90.7 89.2 REMARK 620 4 HEM A1003 NC 92.3 179.1 89.9 REMARK 620 5 HEM A1003 ND 89.5 90.7 179.9 90.2 REMARK 620 6 HIS A 83 NE2 175.7 88.3 91.3 91.5 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 HEM A1002 NA 90.6 REMARK 620 3 HEM A1002 NB 92.7 89.8 REMARK 620 4 HEM A1002 NC 90.6 178.7 90.6 REMARK 620 5 HEM A1002 ND 88.6 90.2 178.7 89.4 REMARK 620 6 HIS A 52 NE2 177.5 87.5 88.9 91.3 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HEM A1004 NA 91.8 REMARK 620 3 HEM A1004 NB 89.8 91.1 REMARK 620 4 HEM A1004 NC 90.3 177.8 88.8 REMARK 620 5 HEM A1004 ND 87.9 88.7 177.7 91.5 REMARK 620 6 HIS A 106 NE2 178.0 89.9 91.3 88.0 91.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2012 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2013 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2014 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2015 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2016 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 2017 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CDV RELATED DB: PDB REMARK 900 RELATED ID: 1J0O RELATED DB: PDB REMARK 900 WILD TYPE DBREF 1J0P A 0 107 UNP P00132 CYC3_DESVM 23 130 SEQADV 1J0P LEU A 43 UNP P00132 TYR 66 ENGINEERED MUTATION SEQRES 1 A 108 ALA ALA PRO LYS ALA PRO ALA ASP GLY LEU LYS MET ASP SEQRES 2 A 108 LYS THR LYS GLN PRO VAL VAL PHE ASN HIS SER THR HIS SEQRES 3 A 108 LYS ALA VAL LYS CYS GLY ASP CYS HIS HIS PRO VAL ASN SEQRES 4 A 108 GLY LYS GLU ASP LEU GLN LYS CYS ALA THR ALA GLY CYS SEQRES 5 A 108 HIS ASP ASN MET ASP LYS LYS ASP LYS SER ALA LYS GLY SEQRES 6 A 108 TYR TYR HIS ALA MET HIS ASP LYS GLY THR LYS PHE LYS SEQRES 7 A 108 SER CYS VAL GLY CYS HIS LEU GLU THR ALA GLY ALA ASP SEQRES 8 A 108 ALA ALA LYS LYS LYS GLU LEU THR GLY CYS LYS GLY SER SEQRES 9 A 108 LYS CYS HIS SER HET SO4 A2501 5 HET SO4 A2502 5 HET HEM A1004 43 HET HEM A1002 46 HET HEM A1001 46 HET HEM A1003 43 HET EOH A2001 3 HET EOH A2002 3 HET EOH A2003 3 HET EOH A2004 3 HET EOH A2005 3 HET EOH A2006 3 HET EOH A2007 3 HET EOH A2008 3 HET EOH A2009 3 HET EOH A2010 3 HET EOH A2011 3 HET EOH A2012 3 HET EOH A2013 3 HET EOH A2014 3 HET EOH A2015 3 HET EOH A2016 3 HET EOH A2017 3 HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EOH ETHANOL HETSYN HEM HEME FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HEM 4(C34 H32 FE N4 O4) FORMUL 8 EOH 17(C2 H6 O) FORMUL 25 HOH *371(H2 O) HELIX 1 1 ASN A 21 HIS A 25 5 5 HELIX 2 2 LYS A 29 CYS A 33 5 5 HELIX 3 3 GLY A 64 ASP A 71 1 8 HELIX 4 4 SER A 78 GLY A 88 1 11 HELIX 5 5 ASP A 90 GLY A 99 1 10 SHEET 1 A 2 LEU A 9 MET A 11 0 SHEET 2 A 2 VAL A 18 PHE A 20 -1 O VAL A 18 N MET A 11 SHEET 1 B 2 PRO A 36 VAL A 37 0 SHEET 2 B 2 LYS A 40 GLU A 41 -1 O LYS A 40 N VAL A 37 LINK SG CYS A 30 CAB HEM A1001 1555 1555 1.80 LINK SG CYS A 33 CAC HEM A1001 1555 1555 1.85 LINK SG CYS A 46 CAB HEM A1002 1555 1555 1.83 LINK SG CYS A 51 CAC HEM A1002 1555 1555 1.86 LINK SG CYS A 79 CAB HEM A1003 1555 1555 1.84 LINK SG CYS A 82 CAC HEM A1003 1555 1555 1.81 LINK SG CYS A 100 CAB HEM A1004 1555 1555 1.86 LINK SG CYS A 105 CAC HEM A1004 1555 1555 1.81 LINK NE2 HIS A 22 FE HEM A1001 1555 1555 1.99 LINK NE2 HIS A 25 FE HEM A1003 1555 1555 2.03 LINK NE2 HIS A 34 FE HEM A1001 1555 1555 1.91 LINK NE2 HIS A 35 FE HEM A1002 1555 1555 2.01 LINK NE2 HIS A 52 FE HEM A1002 1555 1555 1.98 LINK NE2 HIS A 70 FE HEM A1004 1555 1555 1.96 LINK NE2 HIS A 83 FE HEM A1003 1555 1555 1.95 LINK NE2 HIS A 106 FE HEM A1004 1555 1555 1.97 SITE 1 AC1 8 ALA A 0 LYS A 40 LYS A 101 HOH A3032 SITE 2 AC1 8 HOH A3063 HOH A3066 HOH A3141 HOH A3265 SITE 1 AC2 10 ALA A 0 LYS A 40 LYS A 57 EOH A2012 SITE 2 AC2 10 HOH A3003 HOH A3067 HOH A3109 HOH A3174 SITE 3 AC2 10 HOH A3176 HOH A3276 SITE 1 AC3 27 MET A 11 ASP A 12 LYS A 13 THR A 14 SITE 2 AC3 27 GLN A 16 PRO A 17 VAL A 18 ASN A 38 SITE 3 AC3 27 GLY A 39 TYR A 65 TYR A 66 HIS A 70 SITE 4 AC3 27 CYS A 79 VAL A 80 HIS A 83 LEU A 97 SITE 5 AC3 27 THR A 98 GLY A 99 CYS A 100 CYS A 105 SITE 6 AC3 27 HIS A 106 EOH A2003 HOH A3014 HOH A3081 SITE 7 AC3 27 HOH A3082 HOH A3125 HOH A3212 SITE 1 AC4 21 CYS A 33 HIS A 35 ASP A 42 GLN A 44 SITE 2 AC4 21 LYS A 45 CYS A 46 CYS A 51 HIS A 52 SITE 3 AC4 21 HIS A 67 ALA A 68 THR A 74 LYS A 75 SITE 4 AC4 21 PHE A 76 EOH A2006 HOH A3092 HOH A3137 SITE 5 AC4 21 HOH A3168 HOH A3200 HOH A3321 HOH A3333 SITE 6 AC4 21 HOH A3337 SITE 1 AC5 24 PRO A 2 LYS A 3 ALA A 4 PRO A 5 SITE 2 AC5 24 LEU A 9 MET A 11 PHE A 20 HIS A 22 SITE 3 AC5 24 HIS A 25 VAL A 28 CYS A 30 CYS A 33 SITE 4 AC5 24 HIS A 34 LEU A 43 LYS A 45 CYS A 46 SITE 5 AC5 24 HEM A1003 EOH A2017 HOH A3013 HOH A3037 SITE 6 AC5 24 HOH A3187 HOH A3195 HOH A3197 HOH A3326 SITE 1 AC6 17 VAL A 18 ASN A 21 THR A 24 HIS A 25 SITE 2 AC6 17 CYS A 79 CYS A 82 HIS A 83 LYS A 93 SITE 3 AC6 17 LYS A 104 HEM A1001 EOH A2008 HOH A3020 SITE 4 AC6 17 HOH A3023 HOH A3101 HOH A3241 HOH A3251 SITE 5 AC6 17 HOH A3332 SITE 1 AC7 4 CYS A 51 HOH A3007 HOH A3046 HOH A3316 SITE 1 AC8 4 HIS A 70 LYS A 72 HOH A3165 HOH A3292 SITE 1 AC9 4 GLN A 16 CYS A 100 HEM A1004 HOH A3128 SITE 1 BC1 7 LYS A 15 EOH A2005 HOH A3107 HOH A3113 SITE 2 BC1 7 HOH A3140 HOH A3179 HOH A3263 SITE 1 BC2 4 ALA A 4 PRO A 5 EOH A2004 HOH A3073 SITE 1 BC3 3 GLY A 50 HEM A1002 HOH A3139 SITE 1 BC4 4 LYS A 72 GLY A 73 GLU A 85 THR A 86 SITE 1 BC5 7 VAL A 19 ASN A 21 LYS A 104 HEM A1003 SITE 2 BC5 7 HOH A3019 HOH A3225 HOH A3281 SITE 1 BC6 4 ALA A 27 EOH A2015 HOH A3099 HOH A3310 SITE 1 BC7 4 TYR A 66 HOH A3043 HOH A3156 HOH A3204 SITE 1 BC8 2 HOH A3153 HOH A3304 SITE 1 BC9 3 LYS A 40 LYS A 58 SO4 A2502 SITE 1 CC1 3 ASP A 7 ASN A 21 SER A 61 SITE 1 CC2 6 LYS A 29 LYS A 63 HOH A3186 HOH A3255 SITE 2 CC2 6 HOH A3277 HOH A3352 SITE 1 CC3 7 THR A 24 HIS A 25 LYS A 26 ALA A 27 SITE 2 CC3 7 VAL A 28 EOH A2009 HOH A3189 SITE 1 CC4 3 ASP A 32 HOH A3132 HOH A3192 SITE 1 CC5 7 LEU A 9 LYS A 10 LYS A 45 HEM A1001 SITE 2 CC5 7 HOH A3012 HOH A3213 HOH A3287 CRYST1 51.868 67.309 34.328 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029131 0.00000