data_1J1F # _entry.id 1J1F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J1F pdb_00001j1f 10.2210/pdb1j1f/pdb RCSB RCSB005509 ? ? WWPDB D_1000005509 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-11-10 6 'Structure model' 1 5 2023-10-25 7 'Structure model' 1 6 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' 8 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_initial_refinement_model 8 7 'Structure model' pdbx_entry_details 9 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J1F _pdbx_database_status.recvd_initial_deposition_date 2002-12-03 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1J1G _pdbx_database_related.details ;RNase MC1 mutant N71S in complex with 5'-GMP ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Numata, T.' 1 'Suzuki, A.' 2 'Kakuta, Y.' 3 'Kimura, K.' 4 'Yao, M.' 5 'Tanaka, I.' 6 'Yoshida, Y.' 7 'Ueda, T.' 8 'Kimura, M.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity ; Biochemistry 42 5270 5278 2003 BICHAW US 0006-2960 0033 ? 12731868 10.1021/bi034103g 1 'Crystal structure of a ribonuclease from the seeds of bitter gourd (Momordica charantia) at 1.75 A resolution' BIOCHIM.BIOPHYS.ACTA 1433 253 260 1999 BBACAQ NE 0006-3002 0113 ? ? '10.1016/S0167-4838(99)00126-0' 2 ;Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity ; Biochem.Biophys.Res.Commun. 275 572 576 2000 BBRCA9 US 0006-291X 0146 ? ? 10.1006/bbrc.2000.3318 3 'Amino acid residues in ribonuclease MC1 from bitter gourd seeds which are essential for uridine specificity' BIOCHEMISTRY 40 524 530 2001 BICHAW US 0006-2960 0033 ? ? 10.1021/bi002096f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Numata, T.' 1 ? primary 'Suzuki, A.' 2 ? primary 'Kakuta, Y.' 3 ? primary 'Kimura, K.' 4 ? primary 'Yao, M.' 5 ? primary 'Tanaka, I.' 6 ? primary 'Yoshida, Y.' 7 ? primary 'Ueda, T.' 8 ? primary 'Kimura, M.' 9 ? 1 'Nakagawa, A.' 10 ? 1 'Tanaka, I.' 11 ? 1 'Sakai, R.' 12 ? 1 'Nakashima, T.' 13 ? 1 'Funatsu, G.' 14 ? 1 'Kimura, M.' 15 ? 2 'Suzuki, A.' 16 ? 2 'Yao, M.' 17 ? 2 'Tanaka, I.' 18 ? 2 'Numata, T.' 19 ? 2 'Kikukawa, S.' 20 ? 2 'Yamasaki, N.' 21 ? 2 'Kimura, M.' 22 ? 3 'Numata, T.' 23 ? 3 'Suzuki, A.' 24 ? 3 'Yao, M.' 25 ? 3 'Tanaka, I.' 26 ? 3 'Kimura, M.' 27 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RIBONUCLEASE MC1' 21344.109 1 3.1.27.1 N71T ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 3 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RIBONUCLEASE MC1, RNase MC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPTVLRANNQQ FWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV SYLVEVVACFAQDGSTLIDCTRDTCGANFIF ; _entity_poly.pdbx_seq_one_letter_code_can ;EFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPTVLRANNQQ FWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV SYLVEVVACFAQDGSTLIDCTRDTCGANFIF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PHE n 1 3 ASP n 1 4 SER n 1 5 PHE n 1 6 TRP n 1 7 PHE n 1 8 VAL n 1 9 GLN n 1 10 GLN n 1 11 TRP n 1 12 PRO n 1 13 PRO n 1 14 ALA n 1 15 VAL n 1 16 CYS n 1 17 SER n 1 18 PHE n 1 19 GLN n 1 20 LYS n 1 21 SER n 1 22 GLY n 1 23 SER n 1 24 CYS n 1 25 PRO n 1 26 GLY n 1 27 SER n 1 28 GLY n 1 29 LEU n 1 30 ARG n 1 31 THR n 1 32 PHE n 1 33 THR n 1 34 ILE n 1 35 HIS n 1 36 GLY n 1 37 LEU n 1 38 TRP n 1 39 PRO n 1 40 GLN n 1 41 GLN n 1 42 SER n 1 43 GLY n 1 44 THR n 1 45 SER n 1 46 LEU n 1 47 THR n 1 48 ASN n 1 49 CYS n 1 50 PRO n 1 51 GLY n 1 52 SER n 1 53 PRO n 1 54 PHE n 1 55 ASP n 1 56 ILE n 1 57 THR n 1 58 LYS n 1 59 ILE n 1 60 SER n 1 61 HIS n 1 62 LEU n 1 63 GLN n 1 64 SER n 1 65 GLN n 1 66 LEU n 1 67 ASN n 1 68 THR n 1 69 LEU n 1 70 TRP n 1 71 PRO n 1 72 THR n 1 73 VAL n 1 74 LEU n 1 75 ARG n 1 76 ALA n 1 77 ASN n 1 78 ASN n 1 79 GLN n 1 80 GLN n 1 81 PHE n 1 82 TRP n 1 83 SER n 1 84 HIS n 1 85 GLU n 1 86 TRP n 1 87 THR n 1 88 LYS n 1 89 HIS n 1 90 GLY n 1 91 THR n 1 92 CYS n 1 93 SER n 1 94 GLU n 1 95 SER n 1 96 THR n 1 97 PHE n 1 98 ASN n 1 99 GLN n 1 100 ALA n 1 101 ALA n 1 102 TYR n 1 103 PHE n 1 104 LYS n 1 105 LEU n 1 106 ALA n 1 107 VAL n 1 108 ASP n 1 109 MET n 1 110 ARG n 1 111 ASN n 1 112 ASN n 1 113 TYR n 1 114 ASP n 1 115 ILE n 1 116 ILE n 1 117 GLY n 1 118 ALA n 1 119 LEU n 1 120 ARG n 1 121 PRO n 1 122 HIS n 1 123 ALA n 1 124 ALA n 1 125 GLY n 1 126 PRO n 1 127 ASN n 1 128 GLY n 1 129 ARG n 1 130 THR n 1 131 LYS n 1 132 SER n 1 133 ARG n 1 134 GLN n 1 135 ALA n 1 136 ILE n 1 137 LYS n 1 138 GLY n 1 139 PHE n 1 140 LEU n 1 141 LYS n 1 142 ALA n 1 143 LYS n 1 144 PHE n 1 145 GLY n 1 146 LYS n 1 147 PHE n 1 148 PRO n 1 149 GLY n 1 150 LEU n 1 151 ARG n 1 152 CYS n 1 153 ARG n 1 154 THR n 1 155 ASP n 1 156 PRO n 1 157 GLN n 1 158 THR n 1 159 LYS n 1 160 VAL n 1 161 SER n 1 162 TYR n 1 163 LEU n 1 164 VAL n 1 165 GLU n 1 166 VAL n 1 167 VAL n 1 168 ALA n 1 169 CYS n 1 170 PHE n 1 171 ALA n 1 172 GLN n 1 173 ASP n 1 174 GLY n 1 175 SER n 1 176 THR n 1 177 LEU n 1 178 ILE n 1 179 ASP n 1 180 CYS n 1 181 THR n 1 182 ARG n 1 183 ASP n 1 184 THR n 1 185 CYS n 1 186 GLY n 1 187 ALA n 1 188 ASN n 1 189 PHE n 1 190 ILE n 1 191 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'balsam pear' _entity_src_gen.gene_src_genus Momordica _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Momordica charantia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3673 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 0 0 GLU GLU A . n A 1 2 PHE 2 1 1 PHE PHE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 TRP 6 5 5 TRP TRP A . n A 1 7 PHE 7 6 6 PHE PHE A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 TRP 11 10 10 TRP TRP A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 CYS 16 15 15 CYS CYS A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 CYS 24 23 23 CYS CYS A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 HIS 35 34 34 HIS HIS A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 TRP 38 37 37 TRP TRP A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 GLN 41 40 40 GLN GLN A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 CYS 49 48 48 CYS CYS A . n A 1 50 PRO 50 49 49 PRO PRO A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 PHE 54 53 53 PHE PHE A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 HIS 61 60 60 HIS HIS A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ASN 67 66 66 ASN ASN A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TRP 70 69 69 TRP TRP A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 ASN 78 77 77 ASN ASN A . n A 1 79 GLN 79 78 78 GLN GLN A . n A 1 80 GLN 80 79 79 GLN GLN A . n A 1 81 PHE 81 80 80 PHE PHE A . n A 1 82 TRP 82 81 81 TRP TRP A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 HIS 84 83 83 HIS HIS A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 TRP 86 85 85 TRP TRP A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 LYS 88 87 87 LYS LYS A . n A 1 89 HIS 89 88 88 HIS HIS A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 THR 91 90 90 THR THR A . n A 1 92 CYS 92 91 91 CYS CYS A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 PHE 97 96 96 PHE PHE A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 ALA 100 99 99 ALA ALA A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 PHE 103 102 102 PHE PHE A . n A 1 104 LYS 104 103 103 LYS LYS A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 VAL 107 106 106 VAL VAL A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 MET 109 108 108 MET MET A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 ASN 111 110 110 ASN ASN A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 TYR 113 112 112 TYR TYR A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 ARG 120 119 119 ARG ARG A . n A 1 121 PRO 121 120 120 PRO PRO A . n A 1 122 HIS 122 121 121 HIS HIS A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 ARG 129 128 128 ARG ARG A . n A 1 130 THR 130 129 129 THR THR A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 PRO 148 147 147 PRO PRO A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 CYS 152 151 151 CYS CYS A . n A 1 153 ARG 153 152 152 ARG ARG A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 PRO 156 155 155 PRO PRO A . n A 1 157 GLN 157 156 156 GLN GLN A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 VAL 160 159 159 VAL VAL A . n A 1 161 SER 161 160 160 SER SER A . n A 1 162 TYR 162 161 161 TYR TYR A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 VAL 166 165 165 VAL VAL A . n A 1 167 VAL 167 166 166 VAL VAL A . n A 1 168 ALA 168 167 167 ALA ALA A . n A 1 169 CYS 169 168 168 CYS CYS A . n A 1 170 PHE 170 169 169 PHE PHE A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 GLN 172 171 171 GLN GLN A . n A 1 173 ASP 173 172 172 ASP ASP A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 LEU 177 176 176 LEU LEU A . n A 1 178 ILE 178 177 177 ILE ILE A . n A 1 179 ASP 179 178 178 ASP ASP A . n A 1 180 CYS 180 179 179 CYS CYS A . n A 1 181 THR 181 180 180 THR THR A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 ASP 183 182 182 ASP ASP A . n A 1 184 THR 184 183 183 THR THR A . n A 1 185 CYS 185 184 184 CYS CYS A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 PHE 189 188 188 PHE PHE A . n A 1 190 ILE 190 189 189 ILE ILE A . n A 1 191 PHE 191 190 190 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 295 295 5GP 5GP A . C 3 HOH 1 296 1 HOH TIP A . C 3 HOH 2 297 2 HOH TIP A . C 3 HOH 3 298 3 HOH TIP A . C 3 HOH 4 299 4 HOH TIP A . C 3 HOH 5 300 5 HOH TIP A . C 3 HOH 6 301 6 HOH TIP A . C 3 HOH 7 302 7 HOH TIP A . C 3 HOH 8 303 9 HOH TIP A . C 3 HOH 9 304 10 HOH TIP A . C 3 HOH 10 305 11 HOH TIP A . C 3 HOH 11 306 12 HOH TIP A . C 3 HOH 12 307 13 HOH TIP A . C 3 HOH 13 308 14 HOH TIP A . C 3 HOH 14 309 15 HOH TIP A . C 3 HOH 15 310 16 HOH TIP A . C 3 HOH 16 311 18 HOH TIP A . C 3 HOH 17 312 19 HOH TIP A . C 3 HOH 18 313 21 HOH TIP A . C 3 HOH 19 314 22 HOH TIP A . C 3 HOH 20 315 23 HOH TIP A . C 3 HOH 21 316 24 HOH TIP A . C 3 HOH 22 317 26 HOH TIP A . C 3 HOH 23 318 27 HOH TIP A . C 3 HOH 24 319 28 HOH TIP A . C 3 HOH 25 320 29 HOH TIP A . C 3 HOH 26 321 30 HOH TIP A . C 3 HOH 27 322 31 HOH TIP A . C 3 HOH 28 323 32 HOH TIP A . C 3 HOH 29 324 33 HOH TIP A . C 3 HOH 30 325 34 HOH TIP A . C 3 HOH 31 326 35 HOH TIP A . C 3 HOH 32 327 36 HOH TIP A . C 3 HOH 33 328 37 HOH TIP A . C 3 HOH 34 329 38 HOH TIP A . C 3 HOH 35 330 39 HOH TIP A . C 3 HOH 36 331 40 HOH TIP A . C 3 HOH 37 332 41 HOH TIP A . C 3 HOH 38 333 42 HOH TIP A . C 3 HOH 39 334 43 HOH TIP A . C 3 HOH 40 335 45 HOH TIP A . C 3 HOH 41 336 46 HOH TIP A . C 3 HOH 42 337 47 HOH TIP A . C 3 HOH 43 338 48 HOH TIP A . C 3 HOH 44 339 49 HOH TIP A . C 3 HOH 45 340 50 HOH TIP A . C 3 HOH 46 341 51 HOH TIP A . C 3 HOH 47 342 52 HOH TIP A . C 3 HOH 48 343 53 HOH TIP A . C 3 HOH 49 344 54 HOH TIP A . C 3 HOH 50 345 55 HOH TIP A . C 3 HOH 51 346 56 HOH TIP A . C 3 HOH 52 347 57 HOH TIP A . C 3 HOH 53 348 58 HOH TIP A . C 3 HOH 54 349 59 HOH TIP A . C 3 HOH 55 350 60 HOH TIP A . C 3 HOH 56 351 61 HOH TIP A . C 3 HOH 57 352 62 HOH TIP A . C 3 HOH 58 353 63 HOH TIP A . C 3 HOH 59 354 64 HOH TIP A . C 3 HOH 60 355 65 HOH TIP A . C 3 HOH 61 356 66 HOH TIP A . C 3 HOH 62 357 67 HOH TIP A . C 3 HOH 63 358 68 HOH TIP A . C 3 HOH 64 359 69 HOH TIP A . C 3 HOH 65 360 70 HOH TIP A . C 3 HOH 66 361 72 HOH TIP A . C 3 HOH 67 362 73 HOH TIP A . C 3 HOH 68 363 74 HOH TIP A . C 3 HOH 69 364 75 HOH TIP A . C 3 HOH 70 365 76 HOH TIP A . C 3 HOH 71 366 77 HOH TIP A . C 3 HOH 72 367 78 HOH TIP A . C 3 HOH 73 368 81 HOH TIP A . C 3 HOH 74 369 82 HOH TIP A . C 3 HOH 75 370 83 HOH TIP A . C 3 HOH 76 371 84 HOH TIP A . C 3 HOH 77 372 85 HOH TIP A . C 3 HOH 78 373 86 HOH TIP A . C 3 HOH 79 374 87 HOH TIP A . C 3 HOH 80 375 88 HOH TIP A . C 3 HOH 81 376 89 HOH TIP A . C 3 HOH 82 377 90 HOH TIP A . C 3 HOH 83 378 91 HOH TIP A . C 3 HOH 84 379 92 HOH TIP A . C 3 HOH 85 380 93 HOH TIP A . C 3 HOH 86 381 94 HOH TIP A . C 3 HOH 87 382 96 HOH TIP A . C 3 HOH 88 383 98 HOH TIP A . C 3 HOH 89 384 100 HOH TIP A . C 3 HOH 90 385 101 HOH TIP A . C 3 HOH 91 386 102 HOH TIP A . C 3 HOH 92 387 103 HOH TIP A . C 3 HOH 93 388 104 HOH TIP A . C 3 HOH 94 389 105 HOH TIP A . C 3 HOH 95 390 107 HOH TIP A . C 3 HOH 96 391 108 HOH TIP A . C 3 HOH 97 392 110 HOH TIP A . C 3 HOH 98 393 111 HOH TIP A . C 3 HOH 99 394 112 HOH TIP A . C 3 HOH 100 395 113 HOH TIP A . C 3 HOH 101 396 114 HOH TIP A . C 3 HOH 102 397 119 HOH TIP A . C 3 HOH 103 398 120 HOH TIP A . C 3 HOH 104 399 121 HOH TIP A . C 3 HOH 105 400 122 HOH TIP A . C 3 HOH 106 401 123 HOH TIP A . C 3 HOH 107 402 124 HOH TIP A . C 3 HOH 108 403 125 HOH TIP A . C 3 HOH 109 404 126 HOH TIP A . C 3 HOH 110 405 127 HOH TIP A . C 3 HOH 111 406 128 HOH TIP A . C 3 HOH 112 407 129 HOH TIP A . C 3 HOH 113 408 130 HOH TIP A . C 3 HOH 114 409 131 HOH TIP A . C 3 HOH 115 410 132 HOH TIP A . C 3 HOH 116 411 133 HOH TIP A . C 3 HOH 117 412 134 HOH TIP A . C 3 HOH 118 413 135 HOH TIP A . C 3 HOH 119 414 136 HOH TIP A . C 3 HOH 120 415 137 HOH TIP A . C 3 HOH 121 416 138 HOH TIP A . C 3 HOH 122 417 139 HOH TIP A . C 3 HOH 123 418 140 HOH TIP A . C 3 HOH 124 419 141 HOH TIP A . C 3 HOH 125 420 142 HOH TIP A . C 3 HOH 126 421 143 HOH TIP A . C 3 HOH 127 422 144 HOH TIP A . C 3 HOH 128 423 145 HOH TIP A . C 3 HOH 129 424 146 HOH TIP A . C 3 HOH 130 425 147 HOH TIP A . C 3 HOH 131 426 148 HOH TIP A . C 3 HOH 132 427 149 HOH TIP A . C 3 HOH 133 428 150 HOH TIP A . C 3 HOH 134 429 151 HOH TIP A . C 3 HOH 135 430 152 HOH TIP A . C 3 HOH 136 431 153 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1J1F _cell.length_a 38.375 _cell.length_b 65.777 _cell.length_c 75.882 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J1F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1J1F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 39.69 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '0.2M ammonium acetate, 0.1M tri-sodium citrate, 27.5% PEG8000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-03-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1J1F _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.5 _reflns.number_obs 31008 _reflns.number_all 31008 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.B_iso_Wilson_estimate 15.8 _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 92.9 _reflns_shell.Rmerge_I_obs 0.201 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2890 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1J1F _refine.ls_number_reflns_obs 25575 _refine.ls_number_reflns_all 25575 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.04 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all 0.221 _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1247 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 17.9 _refine.aniso_B[1][1] -2.27 _refine.aniso_B[2][2] 4.27 _refine.aniso_B[3][3] -2.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.367496 _refine.solvent_model_param_bsol 36.1703 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1BK7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1J1F _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1504 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1664 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 19.04 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.78 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 3869 _refine_ls_shell.R_factor_R_work 0.25 _refine_ls_shell.percent_reflns_obs 95.8 _refine_ls_shell.R_factor_R_free 0.295 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 196 _refine_ls_shell.number_reflns_obs 3869 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 5GMP_XPLOR.PARAM 5GMP_XPLOR.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1J1F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1J1F _struct.title ;Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J1F _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Hydrolase, Nucleic acid, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNMC_MOMCH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVLRANNQQ FWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV SYLVQVVACFAQDGSTLIDCTRDTCGANFIF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P23540 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J1F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23540 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J1F GLU A 1 ? UNP P23540 ? ? 'cloning artifact' 0 1 1 1J1F GLN A 41 ? UNP P23540 GLY 40 'SEE REMARK 999' 40 2 1 1J1F ? A ? ? UNP P23540 GLN 50 'SEE REMARK 999' ? 3 1 1J1F THR A 72 ? UNP P23540 ASN 72 'engineered mutation' 71 4 1 1J1F GLU A 165 ? UNP P23540 GLN 165 'SEE REMARK 999' 164 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 11 ? SER A 17 ? TRP A 10 SER A 16 1 ? 7 HELX_P HELX_P2 2 CYS A 24 ? LEU A 29 ? CYS A 23 LEU A 28 5 ? 6 HELX_P HELX_P3 3 ASP A 55 ? HIS A 61 ? ASP A 54 HIS A 60 5 ? 7 HELX_P HELX_P4 4 LEU A 62 ? TRP A 70 ? LEU A 61 TRP A 69 1 ? 9 HELX_P HELX_P5 5 ASN A 77 ? HIS A 89 ? ASN A 76 HIS A 88 1 ? 13 HELX_P HELX_P6 6 GLY A 90 ? GLU A 94 ? GLY A 89 GLU A 93 5 ? 5 HELX_P HELX_P7 7 ASN A 98 ? TYR A 113 ? ASN A 97 TYR A 112 1 ? 16 HELX_P HELX_P8 8 ASP A 114 ? ARG A 120 ? ASP A 113 ARG A 119 1 ? 7 HELX_P HELX_P9 9 PRO A 121 ? ALA A 123 ? PRO A 120 ALA A 122 5 ? 3 HELX_P HELX_P10 10 ARG A 133 ? GLY A 145 ? ARG A 132 GLY A 144 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 16 SG ? ? ? 1_555 A CYS 24 SG ? ? A CYS 15 A CYS 23 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 48 A CYS 91 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 185 SG ? ? A CYS 151 A CYS 184 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 169 SG ? ? ? 1_555 A CYS 180 SG ? ? A CYS 168 A CYS 179 1_555 ? ? ? ? ? ? ? 2.033 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 16 ? CYS A 24 ? CYS A 15 ? 1_555 CYS A 23 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 49 ? CYS A 92 ? CYS A 48 ? 1_555 CYS A 91 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 152 ? CYS A 185 ? CYS A 151 ? 1_555 CYS A 184 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 169 ? CYS A 180 ? CYS A 168 ? 1_555 CYS A 179 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 44 ? SER A 45 ? THR A 43 SER A 44 A 2 THR A 33 ? GLN A 41 ? THR A 32 GLN A 40 A 3 SER A 4 ? GLN A 10 ? SER A 3 GLN A 9 A 4 SER A 161 ? ALA A 171 ? SER A 160 ALA A 170 A 5 GLY A 149 ? THR A 154 ? GLY A 148 THR A 153 B 1 THR A 44 ? SER A 45 ? THR A 43 SER A 44 B 2 THR A 33 ? GLN A 41 ? THR A 32 GLN A 40 B 3 SER A 4 ? GLN A 10 ? SER A 3 GLN A 9 B 4 SER A 161 ? ALA A 171 ? SER A 160 ALA A 170 B 5 LEU A 177 ? ILE A 178 ? LEU A 176 ILE A 177 C 1 ARG A 129 ? SER A 132 ? ARG A 128 SER A 131 C 2 ASN A 188 ? PHE A 191 ? ASN A 187 PHE A 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 44 ? O THR A 43 N GLN A 41 ? N GLN A 40 A 2 3 O GLN A 40 ? O GLN A 39 N SER A 4 ? N SER A 3 A 3 4 N PHE A 7 ? N PHE A 6 O ALA A 168 ? O ALA A 167 A 4 5 O VAL A 167 ? O VAL A 166 N GLY A 149 ? N GLY A 148 B 1 2 O THR A 44 ? O THR A 43 N GLN A 41 ? N GLN A 40 B 2 3 O GLN A 40 ? O GLN A 39 N SER A 4 ? N SER A 3 B 3 4 N PHE A 7 ? N PHE A 6 O ALA A 168 ? O ALA A 167 B 4 5 N CYS A 169 ? N CYS A 168 O ILE A 178 ? O ILE A 177 C 1 2 N LYS A 131 ? N LYS A 130 O PHE A 189 ? O PHE A 188 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 5GP _struct_site.pdbx_auth_seq_id 295 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE 5GP A 295' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 GLN A 10 ? GLN A 9 . ? 1_555 ? 2 AC1 12 HIS A 35 ? HIS A 34 . ? 1_555 ? 3 AC1 12 THR A 72 ? THR A 71 . ? 1_555 ? 4 AC1 12 VAL A 73 ? VAL A 72 . ? 1_555 ? 5 AC1 12 ARG A 75 ? ARG A 74 . ? 1_555 ? 6 AC1 12 PHE A 81 ? PHE A 80 . ? 1_555 ? 7 AC1 12 HIS A 84 ? HIS A 83 . ? 1_555 ? 8 AC1 12 GLU A 85 ? GLU A 84 . ? 1_555 ? 9 AC1 12 LYS A 88 ? LYS A 87 . ? 1_555 ? 10 AC1 12 HIS A 89 ? HIS A 88 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 302 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 419 . ? 1_555 ? # _pdbx_entry_details.entry_id 1J1F _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -175.28 -177.23 2 1 CYS A 23 ? ? -164.42 94.29 3 1 ARG A 74 ? ? -108.41 -150.90 4 1 ASN A 126 ? ? -159.95 12.23 5 1 SER A 174 ? ? -136.98 -30.25 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BK7 _pdbx_initial_refinement_model.details 'PDB ENTRY 1BK7' # _atom_sites.entry_id 1J1F _atom_sites.fract_transf_matrix[1][1] 0.026059 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015203 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013178 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_