data_1J1V # _entry.id 1J1V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J1V pdb_00001j1v 10.2210/pdb1j1v/pdb NDB PD0371 ? ? RCSB RCSB005525 ? ? WWPDB D_1000005525 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' pdbx_entry_details 7 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J1V _pdbx_database_status.recvd_initial_deposition_date 2002-12-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id trt001000145.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujikawa, N.' 1 'Kurumizaka, H.' 2 'Nureki, O.' 3 'Terada, T.' 4 'Shirouzu, M.' 5 'Katayama, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Structural basis of replication origin recognition by the DnaA protein' _citation.journal_abbrev 'NUCLEIC ACIDS RES.' _citation.journal_volume 31 _citation.page_first 2077 _citation.page_last 2086 _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12682358 _citation.pdbx_database_id_DOI 10.1093/nar/gkg309 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujikawa, N.' 1 ? primary 'Kurumizaka, H.' 2 ? primary 'Nureki, O.' 3 ? primary 'Terada, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Katayama, T.' 6 ? primary 'Yokoyama, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3'" 3966.597 1 ? ? ? ? 2 polymer syn "5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'" 3975.611 1 ? ? ? ? 3 polymer man 'Chromosomal replication initiator protein dnaA' 10834.071 1 ? ? 'DNA binding domain, DnaA domainIV' ? 4 water nat water 18.015 143 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'DnaAbox DNA' 2 'DnaAbox DNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DT)(DA)(DT)(DC)(DC)(DA)(DC)(DA)(DG)(DG)' TGTTATCCACAGG B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DG)(DT)(DG)(DG)(DA)(DT)(DA)(DA)(DC)(DA)' CCTGTGGATAACA C ? 3 'polypeptide(L)' no yes ;VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ(MSE)A(MSE)ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE QLREESHDIKEDFSNLIRTLSS ; ;VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHD IKEDFSNLIRTLSS ; A trt001000145.1 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DG n 1 13 DG n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DT n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DA n 2 11 DA n 2 12 DC n 2 13 DA n 3 1 VAL n 3 2 THR n 3 3 ILE n 3 4 ASP n 3 5 ASN n 3 6 ILE n 3 7 GLN n 3 8 LYS n 3 9 THR n 3 10 VAL n 3 11 ALA n 3 12 GLU n 3 13 TYR n 3 14 TYR n 3 15 LYS n 3 16 ILE n 3 17 LYS n 3 18 VAL n 3 19 ALA n 3 20 ASP n 3 21 LEU n 3 22 LEU n 3 23 SER n 3 24 LYS n 3 25 ARG n 3 26 ARG n 3 27 SER n 3 28 ARG n 3 29 SER n 3 30 VAL n 3 31 ALA n 3 32 ARG n 3 33 PRO n 3 34 ARG n 3 35 GLN n 3 36 MSE n 3 37 ALA n 3 38 MSE n 3 39 ALA n 3 40 LEU n 3 41 ALA n 3 42 LYS n 3 43 GLU n 3 44 LEU n 3 45 THR n 3 46 ASN n 3 47 HIS n 3 48 SER n 3 49 LEU n 3 50 PRO n 3 51 GLU n 3 52 ILE n 3 53 GLY n 3 54 ASP n 3 55 ALA n 3 56 PHE n 3 57 GLY n 3 58 GLY n 3 59 ARG n 3 60 ASP n 3 61 HIS n 3 62 THR n 3 63 THR n 3 64 VAL n 3 65 LEU n 3 66 HIS n 3 67 ALA n 3 68 CYS n 3 69 ARG n 3 70 LYS n 3 71 ILE n 3 72 GLU n 3 73 GLN n 3 74 LEU n 3 75 ARG n 3 76 GLU n 3 77 GLU n 3 78 SER n 3 79 HIS n 3 80 ASP n 3 81 ILE n 3 82 LYS n 3 83 GLU n 3 84 ASP n 3 85 PHE n 3 86 SER n 3 87 ASN n 3 88 LEU n 3 89 ILE n 3 90 ARG n 3 91 THR n 3 92 LEU n 3 93 SER n 3 94 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene DnaA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis system' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 101 101 DT THY B . n A 1 2 DG 2 102 102 DG GUA B . n A 1 3 DT 3 103 103 DT THY B . n A 1 4 DT 4 104 104 DT THY B . n A 1 5 DA 5 105 105 DA ADE B . n A 1 6 DT 6 106 106 DT THY B . n A 1 7 DC 7 107 107 DC CYT B . n A 1 8 DC 8 108 108 DC CYT B . n A 1 9 DA 9 109 109 DA ADE B . n A 1 10 DC 10 110 110 DC CYT B . n A 1 11 DA 11 111 111 DA ADE B . n A 1 12 DG 12 112 112 DG GUA B . n A 1 13 DG 13 113 113 DG GUA B . n B 2 1 DC 1 201 201 DC CYT C . n B 2 2 DC 2 202 202 DC CYT C . n B 2 3 DT 3 203 203 DT THY C . n B 2 4 DG 4 204 204 DG GUA C . n B 2 5 DT 5 205 205 DT THY C . n B 2 6 DG 6 206 206 DG GUA C . n B 2 7 DG 7 207 207 DG GUA C . n B 2 8 DA 8 208 208 DA ADE C . n B 2 9 DT 9 209 209 DT THY C . n B 2 10 DA 10 210 210 DA ADE C . n B 2 11 DA 11 211 211 DA ADE C . n B 2 12 DC 12 212 212 DC CYT C . n B 2 13 DA 13 213 213 DA ADE C . n C 3 1 VAL 1 374 374 VAL VAL A . n C 3 2 THR 2 375 375 THR THR A . n C 3 3 ILE 3 376 376 ILE ILE A . n C 3 4 ASP 4 377 377 ASP ASP A . n C 3 5 ASN 5 378 378 ASN ASN A . n C 3 6 ILE 6 379 379 ILE ILE A . n C 3 7 GLN 7 380 380 GLN GLN A . n C 3 8 LYS 8 381 381 LYS LYS A . n C 3 9 THR 9 382 382 THR THR A . n C 3 10 VAL 10 383 383 VAL VAL A . n C 3 11 ALA 11 384 384 ALA ALA A . n C 3 12 GLU 12 385 385 GLU GLU A . n C 3 13 TYR 13 386 386 TYR TYR A . n C 3 14 TYR 14 387 387 TYR TYR A . n C 3 15 LYS 15 388 388 LYS LYS A . n C 3 16 ILE 16 389 389 ILE ILE A . n C 3 17 LYS 17 390 390 LYS LYS A . n C 3 18 VAL 18 391 391 VAL VAL A . n C 3 19 ALA 19 392 392 ALA ALA A . n C 3 20 ASP 20 393 393 ASP ASP A . n C 3 21 LEU 21 394 394 LEU LEU A . n C 3 22 LEU 22 395 395 LEU LEU A . n C 3 23 SER 23 396 396 SER SER A . n C 3 24 LYS 24 397 397 LYS LYS A . n C 3 25 ARG 25 398 398 ARG ARG A . n C 3 26 ARG 26 399 399 ARG ARG A . n C 3 27 SER 27 400 400 SER SER A . n C 3 28 ARG 28 401 401 ARG ARG A . n C 3 29 SER 29 402 402 SER SER A . n C 3 30 VAL 30 403 403 VAL VAL A . n C 3 31 ALA 31 404 404 ALA ALA A . n C 3 32 ARG 32 405 405 ARG ARG A . n C 3 33 PRO 33 406 406 PRO PRO A . n C 3 34 ARG 34 407 407 ARG ARG A . n C 3 35 GLN 35 408 408 GLN GLN A . n C 3 36 MSE 36 409 409 MSE MSE A . n C 3 37 ALA 37 410 410 ALA ALA A . n C 3 38 MSE 38 411 411 MSE MSE A . n C 3 39 ALA 39 412 412 ALA ALA A . n C 3 40 LEU 40 413 413 LEU LEU A . n C 3 41 ALA 41 414 414 ALA ALA A . n C 3 42 LYS 42 415 415 LYS LYS A . n C 3 43 GLU 43 416 416 GLU GLU A . n C 3 44 LEU 44 417 417 LEU LEU A . n C 3 45 THR 45 418 418 THR THR A . n C 3 46 ASN 46 419 419 ASN ASN A . n C 3 47 HIS 47 420 420 HIS HIS A . n C 3 48 SER 48 421 421 SER SER A . n C 3 49 LEU 49 422 422 LEU LEU A . n C 3 50 PRO 50 423 423 PRO PRO A . n C 3 51 GLU 51 424 424 GLU GLU A . n C 3 52 ILE 52 425 425 ILE ILE A . n C 3 53 GLY 53 426 426 GLY GLY A . n C 3 54 ASP 54 427 427 ASP ASP A . n C 3 55 ALA 55 428 428 ALA ALA A . n C 3 56 PHE 56 429 429 PHE PHE A . n C 3 57 GLY 57 430 430 GLY GLY A . n C 3 58 GLY 58 431 431 GLY GLY A . n C 3 59 ARG 59 432 432 ARG ARG A . n C 3 60 ASP 60 433 433 ASP ASP A . n C 3 61 HIS 61 434 434 HIS HIS A . n C 3 62 THR 62 435 435 THR THR A . n C 3 63 THR 63 436 436 THR THR A . n C 3 64 VAL 64 437 437 VAL VAL A . n C 3 65 LEU 65 438 438 LEU LEU A . n C 3 66 HIS 66 439 439 HIS HIS A . n C 3 67 ALA 67 440 440 ALA ALA A . n C 3 68 CYS 68 441 441 CYS CYS A . n C 3 69 ARG 69 442 442 ARG ARG A . n C 3 70 LYS 70 443 443 LYS LYS A . n C 3 71 ILE 71 444 444 ILE ILE A . n C 3 72 GLU 72 445 445 GLU GLU A . n C 3 73 GLN 73 446 446 GLN GLN A . n C 3 74 LEU 74 447 447 LEU LEU A . n C 3 75 ARG 75 448 448 ARG ARG A . n C 3 76 GLU 76 449 449 GLU GLU A . n C 3 77 GLU 77 450 450 GLU GLU A . n C 3 78 SER 78 451 451 SER SER A . n C 3 79 HIS 79 452 452 HIS HIS A . n C 3 80 ASP 80 453 453 ASP ASP A . n C 3 81 ILE 81 454 454 ILE ILE A . n C 3 82 LYS 82 455 455 LYS LYS A . n C 3 83 GLU 83 456 456 GLU GLU A . n C 3 84 ASP 84 457 457 ASP ASP A . n C 3 85 PHE 85 458 458 PHE PHE A . n C 3 86 SER 86 459 459 SER SER A . n C 3 87 ASN 87 460 460 ASN ASN A . n C 3 88 LEU 88 461 461 LEU LEU A . n C 3 89 ILE 89 462 462 ILE ILE A . n C 3 90 ARG 90 463 463 ARG ARG A . n C 3 91 THR 91 464 464 THR THR A . n C 3 92 LEU 92 465 465 LEU LEU A . n C 3 93 SER 93 466 466 SER SER A . n C 3 94 SER 94 467 467 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 114 1 HOH TIP B . D 4 HOH 2 115 4 HOH TIP B . D 4 HOH 3 116 8 HOH TIP B . D 4 HOH 4 117 18 HOH TIP B . D 4 HOH 5 118 19 HOH TIP B . D 4 HOH 6 119 21 HOH TIP B . D 4 HOH 7 120 23 HOH TIP B . D 4 HOH 8 121 28 HOH TIP B . D 4 HOH 9 122 35 HOH TIP B . D 4 HOH 10 123 37 HOH TIP B . D 4 HOH 11 124 42 HOH TIP B . D 4 HOH 12 125 44 HOH TIP B . D 4 HOH 13 126 46 HOH TIP B . D 4 HOH 14 127 49 HOH TIP B . D 4 HOH 15 128 51 HOH TIP B . D 4 HOH 16 129 52 HOH TIP B . D 4 HOH 17 130 53 HOH TIP B . D 4 HOH 18 131 57 HOH TIP B . D 4 HOH 19 132 59 HOH TIP B . D 4 HOH 20 133 63 HOH TIP B . D 4 HOH 21 134 65 HOH TIP B . D 4 HOH 22 135 66 HOH TIP B . D 4 HOH 23 136 72 HOH TIP B . D 4 HOH 24 137 74 HOH TIP B . D 4 HOH 25 138 75 HOH TIP B . D 4 HOH 26 139 76 HOH TIP B . D 4 HOH 27 140 77 HOH TIP B . D 4 HOH 28 141 80 HOH TIP B . D 4 HOH 29 142 85 HOH TIP B . D 4 HOH 30 143 91 HOH TIP B . D 4 HOH 31 144 93 HOH TIP B . D 4 HOH 32 145 95 HOH TIP B . D 4 HOH 33 146 96 HOH TIP B . D 4 HOH 34 147 99 HOH TIP B . D 4 HOH 35 148 112 HOH TIP B . D 4 HOH 36 149 118 HOH TIP B . D 4 HOH 37 150 119 HOH TIP B . D 4 HOH 38 151 120 HOH TIP B . D 4 HOH 39 152 127 HOH TIP B . D 4 HOH 40 153 135 HOH TIP B . D 4 HOH 41 154 137 HOH TIP B . D 4 HOH 42 155 139 HOH TIP B . D 4 HOH 43 156 140 HOH TIP B . E 4 HOH 1 5 5 HOH TIP C . E 4 HOH 2 7 7 HOH TIP C . E 4 HOH 3 13 13 HOH TIP C . E 4 HOH 4 14 14 HOH TIP C . E 4 HOH 5 20 20 HOH TIP C . E 4 HOH 6 27 27 HOH TIP C . E 4 HOH 7 30 30 HOH TIP C . E 4 HOH 8 33 33 HOH TIP C . E 4 HOH 9 34 34 HOH TIP C . E 4 HOH 10 38 38 HOH TIP C . E 4 HOH 11 43 43 HOH TIP C . E 4 HOH 12 45 45 HOH TIP C . E 4 HOH 13 50 50 HOH TIP C . E 4 HOH 14 56 56 HOH TIP C . E 4 HOH 15 58 58 HOH TIP C . E 4 HOH 16 60 60 HOH TIP C . E 4 HOH 17 61 61 HOH TIP C . E 4 HOH 18 62 62 HOH TIP C . E 4 HOH 19 64 64 HOH TIP C . E 4 HOH 20 68 68 HOH TIP C . E 4 HOH 21 69 69 HOH TIP C . E 4 HOH 22 70 70 HOH TIP C . E 4 HOH 23 78 78 HOH TIP C . E 4 HOH 24 81 81 HOH TIP C . E 4 HOH 25 82 82 HOH TIP C . E 4 HOH 26 86 86 HOH TIP C . E 4 HOH 27 88 88 HOH TIP C . E 4 HOH 28 97 97 HOH TIP C . E 4 HOH 29 100 100 HOH TIP C . E 4 HOH 30 101 101 HOH TIP C . E 4 HOH 31 102 102 HOH TIP C . E 4 HOH 32 110 110 HOH TIP C . E 4 HOH 33 113 113 HOH TIP C . E 4 HOH 34 114 114 HOH TIP C . E 4 HOH 35 121 121 HOH TIP C . E 4 HOH 36 123 123 HOH TIP C . E 4 HOH 37 131 131 HOH TIP C . E 4 HOH 38 134 134 HOH TIP C . E 4 HOH 39 138 138 HOH TIP C . F 4 HOH 1 2 2 HOH TIP A . F 4 HOH 2 3 3 HOH TIP A . F 4 HOH 3 6 6 HOH TIP A . F 4 HOH 4 9 9 HOH TIP A . F 4 HOH 5 10 10 HOH TIP A . F 4 HOH 6 11 11 HOH TIP A . F 4 HOH 7 12 12 HOH TIP A . F 4 HOH 8 15 15 HOH TIP A . F 4 HOH 9 16 16 HOH TIP A . F 4 HOH 10 17 17 HOH TIP A . F 4 HOH 11 22 22 HOH TIP A . F 4 HOH 12 24 24 HOH TIP A . F 4 HOH 13 25 25 HOH TIP A . F 4 HOH 14 26 26 HOH TIP A . F 4 HOH 15 29 29 HOH TIP A . F 4 HOH 16 31 31 HOH TIP A . F 4 HOH 17 32 32 HOH TIP A . F 4 HOH 18 36 36 HOH TIP A . F 4 HOH 19 39 39 HOH TIP A . F 4 HOH 20 40 40 HOH TIP A . F 4 HOH 21 41 41 HOH TIP A . F 4 HOH 22 47 47 HOH TIP A . F 4 HOH 23 48 48 HOH TIP A . F 4 HOH 24 54 54 HOH TIP A . F 4 HOH 25 55 55 HOH TIP A . F 4 HOH 26 67 67 HOH TIP A . F 4 HOH 27 71 71 HOH TIP A . F 4 HOH 28 73 73 HOH TIP A . F 4 HOH 29 79 79 HOH TIP A . F 4 HOH 30 83 83 HOH TIP A . F 4 HOH 31 84 84 HOH TIP A . F 4 HOH 32 87 87 HOH TIP A . F 4 HOH 33 89 89 HOH TIP A . F 4 HOH 34 90 90 HOH TIP A . F 4 HOH 35 92 92 HOH TIP A . F 4 HOH 36 94 94 HOH TIP A . F 4 HOH 37 98 98 HOH TIP A . F 4 HOH 38 103 103 HOH TIP A . F 4 HOH 39 104 104 HOH TIP A . F 4 HOH 40 105 105 HOH TIP A . F 4 HOH 41 106 106 HOH TIP A . F 4 HOH 42 107 107 HOH TIP A . F 4 HOH 43 108 108 HOH TIP A . F 4 HOH 44 109 109 HOH TIP A . F 4 HOH 45 111 111 HOH TIP A . F 4 HOH 46 115 115 HOH TIP A . F 4 HOH 47 116 116 HOH TIP A . F 4 HOH 48 117 117 HOH TIP A . F 4 HOH 49 122 122 HOH TIP A . F 4 HOH 50 124 124 HOH TIP A . F 4 HOH 51 125 125 HOH TIP A . F 4 HOH 52 126 126 HOH TIP A . F 4 HOH 53 128 128 HOH TIP A . F 4 HOH 54 129 129 HOH TIP A . F 4 HOH 55 130 130 HOH TIP A . F 4 HOH 56 132 132 HOH TIP A . F 4 HOH 57 133 133 HOH TIP A . F 4 HOH 58 136 136 HOH TIP A . F 4 HOH 59 141 141 HOH TIP A . F 4 HOH 60 142 142 HOH TIP A . F 4 HOH 61 143 143 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHARP phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1J1V _cell.length_a 50.385 _cell.length_b 50.385 _cell.length_c 158.830 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1J1V _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? # _exptl.entry_id 1J1V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.04 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_details 'Tris-HCl, magnesium formate, polyethylene glycol 8000, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris-HCl ? ? ? 1 2 1 'magnesium formate' ? ? ? 1 3 1 'polyethylene glycol 8000' ? ? ? 1 4 2 Tris-HCl ? ? ? 1 5 2 'magnesium formate' ? ? ? 1 6 2 'polyethylene glycol 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9795 1.0 3 0.9840 1.0 4 0.9736 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9792, 0.9795, 0.9840, 0.9736' # _reflns.entry_id 1J1V _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 12618 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 87.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1J1V _refine.ls_d_res_high 2.1 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12685 _refine.ls_number_reflns_obs 12599 _refine.ls_number_reflns_R_free 1303 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.2292 _refine.ls_R_factor_obs 0.2292 _refine.ls_R_factor_R_work 0.2292 _refine.ls_R_factor_R_free 0.2489 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1J1V _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 752 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1422 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 1.15348 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.009139 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.40347 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.23851 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all 6 2.10 2.18 . 0.2466 . 0.2493 . . . . . . 'X-RAY DIFFRACTION' . 6 2.18 2.26 . 0.235 . 0.2463 . . . . . . 'X-RAY DIFFRACTION' . 6 2.26 2.37 . 0.2482 . 0.2789 . . . . . . 'X-RAY DIFFRACTION' . 6 2.37 2.49 . 0.2566 . 0.2754 . . . . . . 'X-RAY DIFFRACTION' . 6 2.49 2.65 . 0.2425 . 0.2651 . . . . . . 'X-RAY DIFFRACTION' . 6 2.65 2.85 . 0.2496 . 0.2597 . . . . . . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 1J1V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1J1V _struct.title 'Crystal structure of DnaA domainIV complexed with DnaAbox DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J1V _struct_keywords.pdbx_keywords replication/DNA _struct_keywords.text ;Protein-DNA complex, Replication, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, replication-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DNAA_ECOLI 3 ;VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHD IKEDFSNLIRTLSS ; 374 P03004 ? 2 PDB 1J1V 1 ? ? 1J1V ? 3 PDB 1J1V 2 ? ? 1J1V ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1J1V A 1 ? 94 ? P03004 374 ? 467 ? 374 467 2 2 1J1V B 1 ? 13 ? 1J1V 101 ? 113 ? 101 113 3 3 1J1V C 1 ? 13 ? 1J1V 201 ? 213 ? 201 213 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J1V MSE A 36 ? UNP P03004 MET 409 'modified residue' 409 1 1 1J1V MSE A 38 ? UNP P03004 MET 411 'modified residue' 411 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 2 ? TYR C 14 ? THR A 375 TYR A 387 1 ? 13 HELX_P HELX_P2 2 LYS C 17 ? SER C 23 ? LYS A 390 SER A 396 1 ? 7 HELX_P HELX_P3 3 SER C 27 ? THR C 45 ? SER A 400 THR A 418 1 ? 19 HELX_P HELX_P4 4 SER C 48 ? PHE C 56 ? SER A 421 PHE A 429 1 ? 9 HELX_P HELX_P5 5 ASP C 60 ? SER C 78 ? ASP A 433 SER A 451 1 ? 19 HELX_P HELX_P6 6 SER C 78 ? SER C 93 ? SER A 451 SER A 466 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C GLN 35 C ? ? ? 1_555 C MSE 36 N ? ? A GLN 408 A MSE 409 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? C MSE 36 C ? ? ? 1_555 C ALA 37 N ? ? A MSE 409 A ALA 410 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? C ALA 37 C ? ? ? 1_555 C MSE 38 N ? ? A ALA 410 A MSE 411 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? C MSE 38 C ? ? ? 1_555 C ALA 39 N ? ? A MSE 411 A ALA 412 1_555 ? ? ? ? ? ? ? 1.328 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N1 ? ? B DT 101 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? B DT 101 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 12 N3 ? ? B DG 102 C DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 12 O2 ? ? B DG 102 C DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? B DG 102 C DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? B DT 103 C DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? B DT 103 C DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 104 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 104 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 105 C DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 105 C DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 106 C DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 106 C DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 107 C DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 107 C DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 107 C DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 108 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 108 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 108 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 109 C DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 109 C DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 110 C DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 110 C DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 110 C DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 111 C DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 111 C DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 112 C DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 112 C DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 112 C DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 113 C DC 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 113 C DC 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 113 C DC 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE C 36 ? . . . . MSE A 409 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE C 38 ? . . . . MSE A 411 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _pdbx_entry_details.entry_id 1J1V _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CA _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 434 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CB _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 434 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.286 _pdbx_validate_rmsd_bond.bond_target_value 1.535 _pdbx_validate_rmsd_bond.bond_deviation -0.249 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.022 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 429 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -118.86 _pdbx_validate_torsion.psi 62.87 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C MSE 36 A MSE 409 ? MET SELENOMETHIONINE 2 C MSE 38 A MSE 411 ? MET SELENOMETHIONINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MSE N N N N 393 MSE CA C N S 394 MSE C C N N 395 MSE O O N N 396 MSE OXT O N N 397 MSE CB C N N 398 MSE CG C N N 399 MSE SE SE N N 400 MSE CE C N N 401 MSE H H N N 402 MSE H2 H N N 403 MSE HA H N N 404 MSE HXT H N N 405 MSE HB2 H N N 406 MSE HB3 H N N 407 MSE HG2 H N N 408 MSE HG3 H N N 409 MSE HE1 H N N 410 MSE HE2 H N N 411 MSE HE3 H N N 412 PHE N N N N 413 PHE CA C N S 414 PHE C C N N 415 PHE O O N N 416 PHE CB C N N 417 PHE CG C Y N 418 PHE CD1 C Y N 419 PHE CD2 C Y N 420 PHE CE1 C Y N 421 PHE CE2 C Y N 422 PHE CZ C Y N 423 PHE OXT O N N 424 PHE H H N N 425 PHE H2 H N N 426 PHE HA H N N 427 PHE HB2 H N N 428 PHE HB3 H N N 429 PHE HD1 H N N 430 PHE HD2 H N N 431 PHE HE1 H N N 432 PHE HE2 H N N 433 PHE HZ H N N 434 PHE HXT H N N 435 PRO N N N N 436 PRO CA C N S 437 PRO C C N N 438 PRO O O N N 439 PRO CB C N N 440 PRO CG C N N 441 PRO CD C N N 442 PRO OXT O N N 443 PRO H H N N 444 PRO HA H N N 445 PRO HB2 H N N 446 PRO HB3 H N N 447 PRO HG2 H N N 448 PRO HG3 H N N 449 PRO HD2 H N N 450 PRO HD3 H N N 451 PRO HXT H N N 452 SER N N N N 453 SER CA C N S 454 SER C C N N 455 SER O O N N 456 SER CB C N N 457 SER OG O N N 458 SER OXT O N N 459 SER H H N N 460 SER H2 H N N 461 SER HA H N N 462 SER HB2 H N N 463 SER HB3 H N N 464 SER HG H N N 465 SER HXT H N N 466 THR N N N N 467 THR CA C N S 468 THR C C N N 469 THR O O N N 470 THR CB C N R 471 THR OG1 O N N 472 THR CG2 C N N 473 THR OXT O N N 474 THR H H N N 475 THR H2 H N N 476 THR HA H N N 477 THR HB H N N 478 THR HG1 H N N 479 THR HG21 H N N 480 THR HG22 H N N 481 THR HG23 H N N 482 THR HXT H N N 483 TYR N N N N 484 TYR CA C N S 485 TYR C C N N 486 TYR O O N N 487 TYR CB C N N 488 TYR CG C Y N 489 TYR CD1 C Y N 490 TYR CD2 C Y N 491 TYR CE1 C Y N 492 TYR CE2 C Y N 493 TYR CZ C Y N 494 TYR OH O N N 495 TYR OXT O N N 496 TYR H H N N 497 TYR H2 H N N 498 TYR HA H N N 499 TYR HB2 H N N 500 TYR HB3 H N N 501 TYR HD1 H N N 502 TYR HD2 H N N 503 TYR HE1 H N N 504 TYR HE2 H N N 505 TYR HH H N N 506 TYR HXT H N N 507 VAL N N N N 508 VAL CA C N S 509 VAL C C N N 510 VAL O O N N 511 VAL CB C N N 512 VAL CG1 C N N 513 VAL CG2 C N N 514 VAL OXT O N N 515 VAL H H N N 516 VAL H2 H N N 517 VAL HA H N N 518 VAL HB H N N 519 VAL HG11 H N N 520 VAL HG12 H N N 521 VAL HG13 H N N 522 VAL HG21 H N N 523 VAL HG22 H N N 524 VAL HG23 H N N 525 VAL HXT H N N 526 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 MSE N CA sing N N 386 MSE N H sing N N 387 MSE N H2 sing N N 388 MSE CA C sing N N 389 MSE CA CB sing N N 390 MSE CA HA sing N N 391 MSE C O doub N N 392 MSE C OXT sing N N 393 MSE OXT HXT sing N N 394 MSE CB CG sing N N 395 MSE CB HB2 sing N N 396 MSE CB HB3 sing N N 397 MSE CG SE sing N N 398 MSE CG HG2 sing N N 399 MSE CG HG3 sing N N 400 MSE SE CE sing N N 401 MSE CE HE1 sing N N 402 MSE CE HE2 sing N N 403 MSE CE HE3 sing N N 404 PHE N CA sing N N 405 PHE N H sing N N 406 PHE N H2 sing N N 407 PHE CA C sing N N 408 PHE CA CB sing N N 409 PHE CA HA sing N N 410 PHE C O doub N N 411 PHE C OXT sing N N 412 PHE CB CG sing N N 413 PHE CB HB2 sing N N 414 PHE CB HB3 sing N N 415 PHE CG CD1 doub Y N 416 PHE CG CD2 sing Y N 417 PHE CD1 CE1 sing Y N 418 PHE CD1 HD1 sing N N 419 PHE CD2 CE2 doub Y N 420 PHE CD2 HD2 sing N N 421 PHE CE1 CZ doub Y N 422 PHE CE1 HE1 sing N N 423 PHE CE2 CZ sing Y N 424 PHE CE2 HE2 sing N N 425 PHE CZ HZ sing N N 426 PHE OXT HXT sing N N 427 PRO N CA sing N N 428 PRO N CD sing N N 429 PRO N H sing N N 430 PRO CA C sing N N 431 PRO CA CB sing N N 432 PRO CA HA sing N N 433 PRO C O doub N N 434 PRO C OXT sing N N 435 PRO CB CG sing N N 436 PRO CB HB2 sing N N 437 PRO CB HB3 sing N N 438 PRO CG CD sing N N 439 PRO CG HG2 sing N N 440 PRO CG HG3 sing N N 441 PRO CD HD2 sing N N 442 PRO CD HD3 sing N N 443 PRO OXT HXT sing N N 444 SER N CA sing N N 445 SER N H sing N N 446 SER N H2 sing N N 447 SER CA C sing N N 448 SER CA CB sing N N 449 SER CA HA sing N N 450 SER C O doub N N 451 SER C OXT sing N N 452 SER CB OG sing N N 453 SER CB HB2 sing N N 454 SER CB HB3 sing N N 455 SER OG HG sing N N 456 SER OXT HXT sing N N 457 THR N CA sing N N 458 THR N H sing N N 459 THR N H2 sing N N 460 THR CA C sing N N 461 THR CA CB sing N N 462 THR CA HA sing N N 463 THR C O doub N N 464 THR C OXT sing N N 465 THR CB OG1 sing N N 466 THR CB CG2 sing N N 467 THR CB HB sing N N 468 THR OG1 HG1 sing N N 469 THR CG2 HG21 sing N N 470 THR CG2 HG22 sing N N 471 THR CG2 HG23 sing N N 472 THR OXT HXT sing N N 473 TYR N CA sing N N 474 TYR N H sing N N 475 TYR N H2 sing N N 476 TYR CA C sing N N 477 TYR CA CB sing N N 478 TYR CA HA sing N N 479 TYR C O doub N N 480 TYR C OXT sing N N 481 TYR CB CG sing N N 482 TYR CB HB2 sing N N 483 TYR CB HB3 sing N N 484 TYR CG CD1 doub Y N 485 TYR CG CD2 sing Y N 486 TYR CD1 CE1 sing Y N 487 TYR CD1 HD1 sing N N 488 TYR CD2 CE2 doub Y N 489 TYR CD2 HD2 sing N N 490 TYR CE1 CZ doub Y N 491 TYR CE1 HE1 sing N N 492 TYR CE2 CZ sing Y N 493 TYR CE2 HE2 sing N N 494 TYR CZ OH sing N N 495 TYR OH HH sing N N 496 TYR OXT HXT sing N N 497 VAL N CA sing N N 498 VAL N H sing N N 499 VAL N H2 sing N N 500 VAL CA C sing N N 501 VAL CA CB sing N N 502 VAL CA HA sing N N 503 VAL C O doub N N 504 VAL C OXT sing N N 505 VAL CB CG1 sing N N 506 VAL CB CG2 sing N N 507 VAL CB HB sing N N 508 VAL CG1 HG11 sing N N 509 VAL CG1 HG12 sing N N 510 VAL CG1 HG13 sing N N 511 VAL CG2 HG21 sing N N 512 VAL CG2 HG22 sing N N 513 VAL CG2 HG23 sing N N 514 VAL OXT HXT sing N N 515 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1J1V 'double helix' 1J1V 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 0.124 -0.105 0.003 -6.008 -11.222 0.071 1 B_DT101:DA213_C B 101 ? C 213 ? 20 1 1 A DG 2 1_555 B DC 12 1_555 -0.367 -0.078 -0.221 -0.869 -18.203 4.350 2 B_DG102:DC212_C B 102 ? C 212 ? 19 1 1 A DT 3 1_555 B DA 11 1_555 -0.175 -0.159 0.260 -11.481 -17.777 8.141 3 B_DT103:DA211_C B 103 ? C 211 ? 20 1 1 A DT 4 1_555 B DA 10 1_555 0.106 -0.148 0.030 -5.921 -12.489 6.496 4 B_DT104:DA210_C B 104 ? C 210 ? 20 1 1 A DA 5 1_555 B DT 9 1_555 -0.135 -0.018 -0.278 -10.089 -11.496 2.259 5 B_DA105:DT209_C B 105 ? C 209 ? 20 1 1 A DT 6 1_555 B DA 8 1_555 -0.148 -0.031 -0.062 -6.296 -7.887 6.944 6 B_DT106:DA208_C B 106 ? C 208 ? 20 1 1 A DC 7 1_555 B DG 7 1_555 0.118 -0.108 -0.135 1.270 -3.734 -0.353 7 B_DC107:DG207_C B 107 ? C 207 ? 19 1 1 A DC 8 1_555 B DG 6 1_555 0.004 -0.078 -0.023 -0.416 -2.260 1.119 8 B_DC108:DG206_C B 108 ? C 206 ? 19 1 1 A DA 9 1_555 B DT 5 1_555 0.142 -0.049 -0.112 3.241 -4.871 -2.696 9 B_DA109:DT205_C B 109 ? C 205 ? 20 1 1 A DC 10 1_555 B DG 4 1_555 0.442 -0.353 -0.377 6.409 -2.684 4.302 10 B_DC110:DG204_C B 110 ? C 204 ? 19 1 1 A DA 11 1_555 B DT 3 1_555 0.257 -0.141 -0.201 2.977 2.834 0.568 11 B_DA111:DT203_C B 111 ? C 203 ? 20 1 1 A DG 12 1_555 B DC 2 1_555 -0.228 -0.187 0.200 14.686 -4.618 -0.795 12 B_DG112:DC202_C B 112 ? C 202 ? 19 1 1 A DG 13 1_555 B DC 1 1_555 -0.295 -0.215 -0.132 -6.106 -15.743 -0.397 13 B_DG113:DC201_C B 113 ? C 201 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DG 2 1_555 B DC 12 1_555 0.417 0.118 3.370 0.645 10.508 36.415 -1.219 -0.557 3.285 16.398 -1.007 37.856 1 BB_DT101DG102:DC212DA213_CC B 101 ? C 213 ? B 102 ? C 212 ? 1 A DG 2 1_555 B DC 12 1_555 A DT 3 1_555 B DA 11 1_555 -0.231 -0.510 3.504 -3.196 -5.391 36.242 -0.011 -0.106 3.548 -8.587 5.091 36.762 2 BB_DG102DT103:DA211DC212_CC B 102 ? C 212 ? B 103 ? C 211 ? 1 A DT 3 1_555 B DA 11 1_555 A DT 4 1_555 B DA 10 1_555 -0.270 -0.166 3.069 1.507 2.014 35.970 -0.534 0.635 3.042 3.256 -2.436 36.055 3 BB_DT103DT104:DA210DA211_CC B 103 ? C 211 ? B 104 ? C 210 ? 1 A DT 4 1_555 B DA 10 1_555 A DA 5 1_555 B DT 9 1_555 -0.632 2.101 3.422 -3.953 -8.565 46.758 3.287 0.466 3.055 -10.664 4.922 47.648 4 BB_DT104DA105:DT209DA210_CC B 104 ? C 210 ? B 105 ? C 209 ? 1 A DA 5 1_555 B DT 9 1_555 A DT 6 1_555 B DA 8 1_555 0.112 -0.434 3.146 -3.120 1.345 27.547 -1.215 -0.952 3.091 2.811 6.520 27.752 5 BB_DA105DT106:DA208DT209_CC B 105 ? C 209 ? B 106 ? C 208 ? 1 A DT 6 1_555 B DA 8 1_555 A DC 7 1_555 B DG 7 1_555 -0.010 -0.254 3.168 0.770 6.511 35.154 -1.317 0.123 3.073 10.665 -1.261 35.741 6 BB_DT106DC107:DG207DA208_CC B 106 ? C 208 ? B 107 ? C 207 ? 1 A DC 7 1_555 B DG 7 1_555 A DC 8 1_555 B DG 6 1_555 -0.215 -0.770 3.437 -0.167 4.440 29.908 -2.407 0.377 3.292 8.544 0.321 30.229 7 BB_DC107DC108:DG206DG207_CC B 107 ? C 207 ? B 108 ? C 206 ? 1 A DC 8 1_555 B DG 6 1_555 A DA 9 1_555 B DT 5 1_555 -0.178 -0.051 3.237 0.352 6.299 35.075 -0.989 0.341 3.179 10.349 -0.579 35.620 8 BB_DC108DA109:DT205DG206_CC B 108 ? C 206 ? B 109 ? C 205 ? 1 A DA 9 1_555 B DT 5 1_555 A DC 10 1_555 B DG 4 1_555 1.102 -0.825 3.216 1.702 4.609 31.730 -2.298 -1.695 3.122 8.368 -3.090 32.099 9 BB_DA109DC110:DG204DT205_CC B 109 ? C 205 ? B 110 ? C 204 ? 1 A DC 10 1_555 B DG 4 1_555 A DA 11 1_555 B DT 3 1_555 -0.265 -0.837 3.464 -0.096 7.765 28.694 -3.309 0.495 3.135 15.317 0.190 29.705 10 BB_DC110DA111:DT203DG204_CC B 110 ? C 204 ? B 111 ? C 203 ? 1 A DA 11 1_555 B DT 3 1_555 A DG 12 1_555 B DC 2 1_555 -0.383 0.555 3.260 -2.973 2.710 32.250 0.514 0.160 3.315 4.856 5.326 32.493 11 BB_DA111DG112:DC202DT203_CC B 111 ? C 203 ? B 112 ? C 202 ? 1 A DG 12 1_555 B DC 2 1_555 A DG 13 1_555 B DC 1 1_555 -0.521 -0.769 3.708 -1.830 8.350 40.641 -2.077 0.518 3.509 11.864 2.600 41.493 12 BB_DG112DG113:DC201DC202_CC B 112 ? C 202 ? B 113 ? C 201 ? # _atom_sites.entry_id 1J1V _atom_sites.fract_transf_matrix[1][1] 0.019847 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019847 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006296 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_