data_1J2H # _entry.id 1J2H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1J2H RCSB RCSB005547 WWPDB D_1000005547 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2003-05-20 _pdbx_database_PDB_obs_spr.pdb_id 1O3X _pdbx_database_PDB_obs_spr.replace_pdb_id 1J2H _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J2I 'mouse ARF1 (delta17-Q71L), GTP form' unspecified PDB 1J2J 'GGA1 GAT N-terminal region in complex with ARF1 GTP form' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1J2H _pdbx_database_status.recvd_initial_deposition_date 2003-01-05 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shiba, T.' 1 'Kawasaki, M.' 2 'Takatsu, H.' 3 'Nogi, T.' 4 'Matsugaki, N.' 5 'Igarashi, N.' 6 'Suzuki, M.' 7 'Kato, R.' 8 'Nakayama, K.' 9 'Wakatsuki, S.' 10 # _citation.id primary _citation.title 'Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport' _citation.journal_abbrev NAT.STRUCT.BIOL. _citation.journal_volume 10 _citation.page_first 386 _citation.page_last 393 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_DOI 10.1038/nsb920 _citation.pdbx_database_id_PubMed ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shiba, T.' 1 primary 'Kawasaki, M.' 2 primary 'Takatsu, H.' 3 primary 'Nogi, T.' 4 primary 'Matsugaki, N.' 5 primary 'Igarashi, N.' 6 primary 'Suzuki, M.' 7 primary 'Kato, R.' 8 primary 'Nakayama, K.' 9 primary 'Wakatsuki, S.' 10 # _cell.entry_id 1J2H _cell.length_a 85.110 _cell.length_b 85.110 _cell.length_c 59.001 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J2H _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADP-ribosylation factor binding protein GGA1' 12755.448 1 ? ? 'GAT domain' ? 2 water nat water 18.015 111 ? ? ? ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ASN n 1 4 LYS n 1 5 LEU n 1 6 ILE n 1 7 LYS n 1 8 GLU n 1 9 MET n 1 10 VAL n 1 11 GLN n 1 12 GLU n 1 13 ASP n 1 14 GLN n 1 15 LYS n 1 16 ARG n 1 17 MET n 1 18 GLU n 1 19 LYS n 1 20 ILE n 1 21 SER n 1 22 LYS n 1 23 ARG n 1 24 VAL n 1 25 ASN n 1 26 ALA n 1 27 ILE n 1 28 GLU n 1 29 GLU n 1 30 VAL n 1 31 ASN n 1 32 ASN n 1 33 ASN n 1 34 VAL n 1 35 LYS n 1 36 LEU n 1 37 LEU n 1 38 THR n 1 39 GLU n 1 40 MET n 1 41 VAL n 1 42 MET n 1 43 SER n 1 44 HIS n 1 45 SER n 1 46 GLN n 1 47 GLY n 1 48 GLY n 1 49 ALA n 1 50 ALA n 1 51 ALA n 1 52 GLY n 1 53 SER n 1 54 SER n 1 55 GLU n 1 56 ASP n 1 57 LEU n 1 58 MET n 1 59 LYS n 1 60 GLU n 1 61 LEU n 1 62 TYR n 1 63 GLN n 1 64 ARG n 1 65 CYS n 1 66 GLU n 1 67 ARG n 1 68 MET n 1 69 ARG n 1 70 PRO n 1 71 THR n 1 72 LEU n 1 73 PHE n 1 74 ARG n 1 75 LEU n 1 76 ALA n 1 77 SER n 1 78 ASP n 1 79 THR n 1 80 GLU n 1 81 ASP n 1 82 ASN n 1 83 ASP n 1 84 GLU n 1 85 ALA n 1 86 LEU n 1 87 ALA n 1 88 GLU n 1 89 ILE n 1 90 LEU n 1 91 GLN n 1 92 ALA n 1 93 ASN n 1 94 ASP n 1 95 ASN n 1 96 LEU n 1 97 THR n 1 98 GLN n 1 99 VAL n 1 100 ILE n 1 101 ASN n 1 102 LEU n 1 103 TYR n 1 104 LYS n 1 105 GLN n 1 106 LEU n 1 107 VAL n 1 108 ARG n 1 109 GLY n 1 110 GLU n 1 111 GLU n 1 112 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4T-2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code GGA1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSS EDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG ; _struct_ref.pdbx_align_begin 166 _struct_ref.pdbx_db_accession Q9UJY5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J2H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UJY5 _struct_ref_seq.db_align_beg 166 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 305 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 166 _struct_ref_seq.pdbx_auth_seq_align_end 305 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1J2H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 57.93 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MPD, PEG6000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-10-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111) + Ge (220)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 0.9500 1.0 3 0.9806 1.0 4 0.9808 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL18B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL18B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9500, 0.9806, 0.9808, 1.0' # _reflns.entry_id 1J2H _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 30 _reflns.number_all 9302 _reflns.number_obs 9301 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 9.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.267 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1J2H _refine.ls_number_reflns_obs 8858 _refine.ls_number_reflns_all 9301 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.2468 _refine.ls_R_factor_all 0.2468 _refine.ls_R_factor_R_work 0.24477 _refine.ls_R_factor_R_free 0.28951 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 443 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.B_iso_mean 46.589 _refine.aniso_B[1][1] 0.09 _refine.aniso_B[2][2] 0.09 _refine.aniso_B[3][3] -0.13 _refine.aniso_B[1][2] 0.04 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.207 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R 0.237 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 886 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 997 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 30.00 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 891 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.727 1.975 ? 1193 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.426 3.000 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 17.844 15.000 ? 184 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 137 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 660 'X-RAY DIFFRACTION' ? r_nbd_refined 0.281 0.300 ? 445 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.274 0.500 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.270 0.300 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.244 0.500 ? 14 'X-RAY DIFFRACTION' ? r_mcbond_it 1.159 1.500 ? 557 'X-RAY DIFFRACTION' ? r_mcangle_it 2.128 2.000 ? 892 'X-RAY DIFFRACTION' ? r_scbond_it 3.127 3.000 ? 334 'X-RAY DIFFRACTION' ? r_scangle_it 5.374 4.500 ? 301 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 673 _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1J2H _struct.title 'Crystal structure of human GGA1 GAT domain' _struct.pdbx_descriptor 'ADP-ribosylation factor binding protein GGA1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J2H _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 6 ? HIS A 44 ? ILE A 197 HIS A 235 1 ? 39 HELX_P HELX_P2 2 ALA A 51 ? SER A 77 ? ALA A 242 SER A 268 1 ? 27 HELX_P HELX_P3 3 ASN A 82 ? ARG A 108 ? ASN A 273 ARG A 299 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1J2H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1J2H _atom_sites.fract_transf_matrix[1][1] 0.011750 _atom_sites.fract_transf_matrix[1][2] 0.006784 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013567 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016949 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 192 192 ALA ALA A . n A 1 2 ALA 2 193 193 ALA ALA A . n A 1 3 ASN 3 194 194 ASN ASN A . n A 1 4 LYS 4 195 195 LYS LYS A . n A 1 5 LEU 5 196 196 LEU LEU A . n A 1 6 ILE 6 197 197 ILE ILE A . n A 1 7 LYS 7 198 198 LYS LYS A . n A 1 8 GLU 8 199 199 GLU GLU A . n A 1 9 MET 9 200 200 MET MET A . n A 1 10 VAL 10 201 201 VAL VAL A . n A 1 11 GLN 11 202 202 GLN GLN A . n A 1 12 GLU 12 203 203 GLU GLU A . n A 1 13 ASP 13 204 204 ASP ASP A . n A 1 14 GLN 14 205 205 GLN GLN A . n A 1 15 LYS 15 206 206 LYS LYS A . n A 1 16 ARG 16 207 207 ARG ARG A . n A 1 17 MET 17 208 208 MET MET A . n A 1 18 GLU 18 209 209 GLU GLU A . n A 1 19 LYS 19 210 210 LYS LYS A . n A 1 20 ILE 20 211 211 ILE ILE A . n A 1 21 SER 21 212 212 SER SER A . n A 1 22 LYS 22 213 213 LYS LYS A . n A 1 23 ARG 23 214 214 ARG ARG A . n A 1 24 VAL 24 215 215 VAL VAL A . n A 1 25 ASN 25 216 216 ASN ASN A . n A 1 26 ALA 26 217 217 ALA ALA A . n A 1 27 ILE 27 218 218 ILE ILE A . n A 1 28 GLU 28 219 219 GLU GLU A . n A 1 29 GLU 29 220 220 GLU GLU A . n A 1 30 VAL 30 221 221 VAL VAL A . n A 1 31 ASN 31 222 222 ASN ASN A . n A 1 32 ASN 32 223 223 ASN ASN A . n A 1 33 ASN 33 224 224 ASN ASN A . n A 1 34 VAL 34 225 225 VAL VAL A . n A 1 35 LYS 35 226 226 LYS LYS A . n A 1 36 LEU 36 227 227 LEU LEU A . n A 1 37 LEU 37 228 228 LEU LEU A . n A 1 38 THR 38 229 229 THR THR A . n A 1 39 GLU 39 230 230 GLU GLU A . n A 1 40 MET 40 231 231 MET MET A . n A 1 41 VAL 41 232 232 VAL VAL A . n A 1 42 MET 42 233 233 MET MET A . n A 1 43 SER 43 234 234 SER SER A . n A 1 44 HIS 44 235 235 HIS HIS A . n A 1 45 SER 45 236 236 SER SER A . n A 1 46 GLN 46 237 237 GLN GLN A . n A 1 47 GLY 47 238 238 GLY GLY A . n A 1 48 GLY 48 239 239 GLY GLY A . n A 1 49 ALA 49 240 240 ALA ALA A . n A 1 50 ALA 50 241 241 ALA ALA A . n A 1 51 ALA 51 242 242 ALA ALA A . n A 1 52 GLY 52 243 243 GLY GLY A . n A 1 53 SER 53 244 244 SER SER A . n A 1 54 SER 54 245 245 SER SER A . n A 1 55 GLU 55 246 246 GLU GLU A . n A 1 56 ASP 56 247 247 ASP ASP A . n A 1 57 LEU 57 248 248 LEU LEU A . n A 1 58 MET 58 249 249 MET MET A . n A 1 59 LYS 59 250 250 LYS LYS A . n A 1 60 GLU 60 251 251 GLU GLU A . n A 1 61 LEU 61 252 252 LEU LEU A . n A 1 62 TYR 62 253 253 TYR TYR A . n A 1 63 GLN 63 254 254 GLN GLN A . n A 1 64 ARG 64 255 255 ARG ARG A . n A 1 65 CYS 65 256 256 CYS CYS A . n A 1 66 GLU 66 257 257 GLU GLU A . n A 1 67 ARG 67 258 258 ARG ARG A . n A 1 68 MET 68 259 259 MET MET A . n A 1 69 ARG 69 260 260 ARG ARG A . n A 1 70 PRO 70 261 261 PRO PRO A . n A 1 71 THR 71 262 262 THR THR A . n A 1 72 LEU 72 263 263 LEU LEU A . n A 1 73 PHE 73 264 264 PHE PHE A . n A 1 74 ARG 74 265 265 ARG ARG A . n A 1 75 LEU 75 266 266 LEU LEU A . n A 1 76 ALA 76 267 267 ALA ALA A . n A 1 77 SER 77 268 268 SER SER A . n A 1 78 ASP 78 269 269 ASP ASP A . n A 1 79 THR 79 270 270 THR THR A . n A 1 80 GLU 80 271 271 GLU GLU A . n A 1 81 ASP 81 272 272 ASP ASP A . n A 1 82 ASN 82 273 273 ASN ASN A . n A 1 83 ASP 83 274 274 ASP ASP A . n A 1 84 GLU 84 275 275 GLU GLU A . n A 1 85 ALA 85 276 276 ALA ALA A . n A 1 86 LEU 86 277 277 LEU LEU A . n A 1 87 ALA 87 278 278 ALA ALA A . n A 1 88 GLU 88 279 279 GLU GLU A . n A 1 89 ILE 89 280 280 ILE ILE A . n A 1 90 LEU 90 281 281 LEU LEU A . n A 1 91 GLN 91 282 282 GLN GLN A . n A 1 92 ALA 92 283 283 ALA ALA A . n A 1 93 ASN 93 284 284 ASN ASN A . n A 1 94 ASP 94 285 285 ASP ASP A . n A 1 95 ASN 95 286 286 ASN ASN A . n A 1 96 LEU 96 287 287 LEU LEU A . n A 1 97 THR 97 288 288 THR THR A . n A 1 98 GLN 98 289 289 GLN GLN A . n A 1 99 VAL 99 290 290 VAL VAL A . n A 1 100 ILE 100 291 291 ILE ILE A . n A 1 101 ASN 101 292 292 ASN ASN A . n A 1 102 LEU 102 293 293 LEU LEU A . n A 1 103 TYR 103 294 294 TYR TYR A . n A 1 104 LYS 104 295 295 LYS LYS A . n A 1 105 GLN 105 296 296 GLN GLN A . n A 1 106 LEU 106 297 297 LEU LEU A . n A 1 107 VAL 107 298 298 VAL VAL A . n A 1 108 ARG 108 299 299 ARG ARG A . n A 1 109 GLY 109 300 300 GLY GLY A . n A 1 110 GLU 110 301 301 GLU GLU A . n A 1 111 GLU 111 302 302 GLU GLU A . n A 1 112 VAL 112 303 303 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH ? . B 2 HOH 2 2 2 HOH HOH ? . B 2 HOH 3 3 3 HOH HOH ? . B 2 HOH 4 4 4 HOH HOH ? . B 2 HOH 5 5 5 HOH HOH ? . B 2 HOH 6 6 6 HOH HOH ? . B 2 HOH 7 7 7 HOH HOH ? . B 2 HOH 8 8 8 HOH HOH ? . B 2 HOH 9 9 9 HOH HOH ? . B 2 HOH 10 10 10 HOH HOH ? . B 2 HOH 11 11 11 HOH HOH ? . B 2 HOH 12 12 12 HOH HOH ? . B 2 HOH 13 13 13 HOH HOH ? . B 2 HOH 14 14 14 HOH HOH ? . B 2 HOH 15 15 15 HOH HOH ? . B 2 HOH 16 16 16 HOH HOH ? . B 2 HOH 17 17 17 HOH HOH ? . B 2 HOH 18 18 18 HOH HOH ? . B 2 HOH 19 19 19 HOH HOH ? . B 2 HOH 20 20 20 HOH HOH ? . B 2 HOH 21 21 21 HOH HOH ? . B 2 HOH 22 22 22 HOH HOH ? . B 2 HOH 23 23 23 HOH HOH ? . B 2 HOH 24 24 24 HOH HOH ? . B 2 HOH 25 25 25 HOH HOH ? . B 2 HOH 26 26 26 HOH HOH ? . B 2 HOH 27 27 27 HOH HOH ? . B 2 HOH 28 28 28 HOH HOH ? . B 2 HOH 29 29 29 HOH HOH ? . B 2 HOH 30 30 30 HOH HOH ? . B 2 HOH 31 31 31 HOH HOH ? . B 2 HOH 32 32 32 HOH HOH ? . B 2 HOH 33 33 33 HOH HOH ? . B 2 HOH 34 34 34 HOH HOH ? . B 2 HOH 35 35 35 HOH HOH ? . B 2 HOH 36 36 36 HOH HOH ? . B 2 HOH 37 37 37 HOH HOH ? . B 2 HOH 38 38 38 HOH HOH ? . B 2 HOH 39 39 39 HOH HOH ? . B 2 HOH 40 40 40 HOH HOH ? . B 2 HOH 41 41 41 HOH HOH ? . B 2 HOH 42 42 42 HOH HOH ? . B 2 HOH 43 43 43 HOH HOH ? . B 2 HOH 44 44 44 HOH HOH ? . B 2 HOH 45 45 45 HOH HOH ? . B 2 HOH 46 46 46 HOH HOH ? . B 2 HOH 47 47 47 HOH HOH ? . B 2 HOH 48 48 48 HOH HOH ? . B 2 HOH 49 49 49 HOH HOH ? . B 2 HOH 50 50 50 HOH HOH ? . B 2 HOH 51 51 51 HOH HOH ? . B 2 HOH 52 52 52 HOH HOH ? . B 2 HOH 53 53 53 HOH HOH ? . B 2 HOH 54 54 54 HOH HOH ? . B 2 HOH 55 55 55 HOH HOH ? . B 2 HOH 56 56 56 HOH HOH ? . B 2 HOH 57 57 57 HOH HOH ? . B 2 HOH 58 58 58 HOH HOH ? . B 2 HOH 59 59 59 HOH HOH ? . B 2 HOH 60 60 60 HOH HOH ? . B 2 HOH 61 61 61 HOH HOH ? . B 2 HOH 62 62 62 HOH HOH ? . B 2 HOH 63 63 63 HOH HOH ? . B 2 HOH 64 64 64 HOH HOH ? . B 2 HOH 65 65 65 HOH HOH ? . B 2 HOH 66 66 66 HOH HOH ? . B 2 HOH 67 67 67 HOH HOH ? . B 2 HOH 68 68 68 HOH HOH ? . B 2 HOH 69 69 69 HOH HOH ? . B 2 HOH 70 70 70 HOH HOH ? . B 2 HOH 71 71 71 HOH HOH ? . B 2 HOH 72 72 72 HOH HOH ? . B 2 HOH 73 73 73 HOH HOH ? . B 2 HOH 74 74 74 HOH HOH ? . B 2 HOH 75 75 75 HOH HOH ? . B 2 HOH 76 76 76 HOH HOH ? . B 2 HOH 77 77 77 HOH HOH ? . B 2 HOH 78 78 78 HOH HOH ? . B 2 HOH 79 79 79 HOH HOH ? . B 2 HOH 80 80 80 HOH HOH ? . B 2 HOH 81 81 81 HOH HOH ? . B 2 HOH 82 82 82 HOH HOH ? . B 2 HOH 83 83 83 HOH HOH ? . B 2 HOH 84 84 84 HOH HOH ? . B 2 HOH 85 85 85 HOH HOH ? . B 2 HOH 86 86 86 HOH HOH ? . B 2 HOH 87 87 87 HOH HOH ? . B 2 HOH 88 88 88 HOH HOH ? . B 2 HOH 89 89 89 HOH HOH ? . B 2 HOH 90 90 90 HOH HOH ? . B 2 HOH 91 91 91 HOH HOH ? . B 2 HOH 92 92 92 HOH HOH ? . B 2 HOH 93 93 93 HOH HOH ? . B 2 HOH 94 94 94 HOH HOH ? . B 2 HOH 95 95 95 HOH HOH ? . B 2 HOH 96 96 96 HOH HOH ? . B 2 HOH 97 97 97 HOH HOH ? . B 2 HOH 98 98 98 HOH HOH ? . B 2 HOH 99 99 99 HOH HOH ? . B 2 HOH 100 100 100 HOH HOH ? . B 2 HOH 101 101 101 HOH HOH ? . B 2 HOH 102 102 102 HOH HOH ? . B 2 HOH 103 103 103 HOH HOH ? . B 2 HOH 104 104 104 HOH HOH ? . B 2 HOH 105 105 105 HOH HOH ? . B 2 HOH 106 106 106 HOH HOH ? . B 2 HOH 107 107 107 HOH HOH ? . B 2 HOH 108 108 108 HOH HOH ? . B 2 HOH 109 109 109 HOH HOH ? . B 2 HOH 110 110 110 HOH HOH ? . B 2 HOH 111 111 111 HOH HOH ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-06 2 'Structure model' 1 1 2003-05-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _software.name REFMAC _software.classification refinement _software.version 5.0 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASN 286 ? ? O . HOH 9 ? ? 2.09 2 1 NZ A LYS 295 ? ? O . HOH 99 ? ? 2.10 3 1 NZ A LYS 226 ? ? O . HOH 86 ? ? 2.16 4 1 OD1 A ASP 204 ? ? NH1 A ARG 207 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 269 ? ? CG A ASP 269 ? ? OD2 A ASP 269 ? ? 123.92 118.30 5.62 0.90 N 2 1 CB A ASP 274 ? ? CG A ASP 274 ? ? OD2 A ASP 274 ? ? 123.77 118.30 5.47 0.90 N 3 1 CB A ASP 285 ? ? CG A ASP 285 ? ? OD2 A ASP 285 ? ? 125.86 118.30 7.56 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 196 ? ? 64.11 -1.33 2 1 ALA A 241 ? ? -152.85 -32.51 3 1 ALA A 242 ? ? 66.02 -146.54 4 1 GLU A 271 ? ? -39.03 121.71 5 1 GLU A 301 ? ? -65.85 -177.26 6 1 GLU A 302 ? ? -98.93 -153.03 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #