HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JAN-03 1J2R TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI GENE PRODUCT YECD AT 1.3 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL ISOCHORISMATASE FAMILY PROTEIN YECD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: YECD GENE PRODUCT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YECD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS PARALLEL BETA-SHEET 3-2-1-4-5-6, ALPHA-BETA-ALPHA MOTIF, TETRAMERE, KEYWDS 2 STRUCTURAL GENOMICS, BACTERIAL TARGETS AT IGS-CNRS, FRANCE, BIGS, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SUHRE,J.-M.CLAVERIE,C.ABERGEL,BACTERIAL TARGETS AT IGS-CNRS,FRANCE AUTHOR 2 (BIGS) REVDAT 6 25-OCT-23 1J2R 1 REMARK REVDAT 5 10-NOV-21 1J2R 1 REMARK SEQADV REVDAT 4 04-OCT-17 1J2R 1 REMARK REVDAT 3 13-JUL-11 1J2R 1 VERSN REVDAT 2 24-FEB-09 1J2R 1 VERSN REVDAT 1 27-JAN-04 1J2R 0 JRNL AUTH K.SUHRE,J.-M.CLAVERIE,C.ABERGEL JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI GENE PRODUCT YECD AT JRNL TITL 2 1.3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 155206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 532 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 924 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5955 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5537 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8125 ; 1.399 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12794 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 927 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6632 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1164 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1162 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6697 ; 0.253 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3533 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 676 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 70 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3724 ; 0.691 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5976 ; 1.263 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2231 ; 1.926 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 3.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE STRUCTURE WAS REFINED ALSO WITH BUSTER, CNS AND REMARK 3 ARPWARP. REMARK 4 REMARK 4 1J2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000005557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.06400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: T-COFFEE, MODELLER, AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1NBA AND 1IM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, TRIS, ACETATE, NACL, LYSINE, PH REMARK 280 5.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 70.25100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.44300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.25100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.44300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 HIS A 3 REMARK 465 ASP A 4 REMARK 465 PHE A 5 REMARK 465 VAL A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 ILE A 11 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 HIS B 3 REMARK 465 ASP B 4 REMARK 465 PHE B 5 REMARK 465 VAL B 6 REMARK 465 PHE B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 VAL B 10 REMARK 465 ILE B 11 REMARK 465 MET B 12 REMARK 465 LEU B 13 REMARK 465 GLU B 14 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 HIS C 3 REMARK 465 ASP C 4 REMARK 465 PHE C 5 REMARK 465 VAL C 6 REMARK 465 PHE C 7 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 VAL C 10 REMARK 465 ILE C 11 REMARK 465 MET C 12 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 HIS D 3 REMARK 465 ASP D 4 REMARK 465 PHE D 5 REMARK 465 VAL D 6 REMARK 465 PHE D 7 REMARK 465 SER D 8 REMARK 465 GLY D 9 REMARK 465 VAL D 10 REMARK 465 ILE D 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1182 O HOH B 1234 2.02 REMARK 500 O HOH D 1099 O HOH D 1258 2.13 REMARK 500 O HOH D 1255 O HOH D 1257 2.14 REMARK 500 O HOH A 1072 O HOH A 1245 2.17 REMARK 500 O HOH D 1223 O HOH D 1258 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 114 -167.42 -162.11 REMARK 500 ILE A 144 -99.66 -113.08 REMARK 500 GLN B 114 -169.43 -161.64 REMARK 500 ILE B 144 -97.42 -112.95 REMARK 500 ILE B 182 -60.15 -105.54 REMARK 500 GLN C 114 -168.43 -161.10 REMARK 500 ILE C 144 -97.93 -111.48 REMARK 500 ILE C 182 -61.42 -107.86 REMARK 500 GLN D 114 -167.50 -162.51 REMARK 500 ILE D 144 -96.76 -112.24 REMARK 500 ILE D 182 -61.47 -107.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ASG-YECD RELATED DB: TARGETDB DBREF 1J2R A 1 199 UNP P37347 YECD_ECOLI 1 199 DBREF 1J2R B 1 199 UNP P37347 YECD_ECOLI 1 199 DBREF 1J2R C 1 199 UNP P37347 YECD_ECOLI 1 199 DBREF 1J2R D 1 199 UNP P37347 YECD_ECOLI 1 199 SEQADV 1J2R THR A 103 UNP P37347 ALA 103 ENGINEERED MUTATION SEQADV 1J2R THR B 103 UNP P37347 ALA 103 ENGINEERED MUTATION SEQADV 1J2R THR C 103 UNP P37347 ALA 103 ENGINEERED MUTATION SEQADV 1J2R THR D 103 UNP P37347 ALA 103 ENGINEERED MUTATION SEQRES 1 A 199 MET ARG HIS ASP PHE VAL PHE SER GLY VAL ILE MET LEU SEQRES 2 A 199 GLU LEU ASN ALA LYS THR THR ALA LEU VAL VAL ILE ASP SEQRES 3 A 199 LEU GLN GLU GLY ILE LEU PRO PHE ALA GLY GLY PRO HIS SEQRES 4 A 199 THR ALA ASP GLU VAL VAL ASN ARG ALA GLY LYS LEU ALA SEQRES 5 A 199 ALA LYS PHE ARG ALA SER GLY GLN PRO VAL PHE LEU VAL SEQRES 6 A 199 ARG VAL GLY TRP SER ALA ASP TYR ALA GLU ALA LEU LYS SEQRES 7 A 199 GLN PRO VAL ASP ALA PRO SER PRO ALA LYS VAL LEU PRO SEQRES 8 A 199 GLU ASN TRP TRP GLN HIS PRO ALA ALA LEU GLY THR THR SEQRES 9 A 199 ASP SER ASP ILE GLU ILE ILE LYS ARG GLN TRP GLY ALA SEQRES 10 A 199 PHE TYR GLY THR ASP LEU GLU LEU GLN LEU ARG ARG ARG SEQRES 11 A 199 GLY ILE ASP THR ILE VAL LEU CYS GLY ILE SER THR ASN SEQRES 12 A 199 ILE GLY VAL GLU SER THR ALA ARG ASN ALA TRP GLU LEU SEQRES 13 A 199 GLY PHE ASN LEU VAL ILE ALA GLU ASP ALA CYS SER ALA SEQRES 14 A 199 ALA SER ALA GLU GLN HIS ASN ASN SER ILE ASN HIS ILE SEQRES 15 A 199 TYR PRO ARG ILE ALA ARG VAL ARG SER VAL GLU GLU ILE SEQRES 16 A 199 LEU ASN ALA LEU SEQRES 1 B 199 MET ARG HIS ASP PHE VAL PHE SER GLY VAL ILE MET LEU SEQRES 2 B 199 GLU LEU ASN ALA LYS THR THR ALA LEU VAL VAL ILE ASP SEQRES 3 B 199 LEU GLN GLU GLY ILE LEU PRO PHE ALA GLY GLY PRO HIS SEQRES 4 B 199 THR ALA ASP GLU VAL VAL ASN ARG ALA GLY LYS LEU ALA SEQRES 5 B 199 ALA LYS PHE ARG ALA SER GLY GLN PRO VAL PHE LEU VAL SEQRES 6 B 199 ARG VAL GLY TRP SER ALA ASP TYR ALA GLU ALA LEU LYS SEQRES 7 B 199 GLN PRO VAL ASP ALA PRO SER PRO ALA LYS VAL LEU PRO SEQRES 8 B 199 GLU ASN TRP TRP GLN HIS PRO ALA ALA LEU GLY THR THR SEQRES 9 B 199 ASP SER ASP ILE GLU ILE ILE LYS ARG GLN TRP GLY ALA SEQRES 10 B 199 PHE TYR GLY THR ASP LEU GLU LEU GLN LEU ARG ARG ARG SEQRES 11 B 199 GLY ILE ASP THR ILE VAL LEU CYS GLY ILE SER THR ASN SEQRES 12 B 199 ILE GLY VAL GLU SER THR ALA ARG ASN ALA TRP GLU LEU SEQRES 13 B 199 GLY PHE ASN LEU VAL ILE ALA GLU ASP ALA CYS SER ALA SEQRES 14 B 199 ALA SER ALA GLU GLN HIS ASN ASN SER ILE ASN HIS ILE SEQRES 15 B 199 TYR PRO ARG ILE ALA ARG VAL ARG SER VAL GLU GLU ILE SEQRES 16 B 199 LEU ASN ALA LEU SEQRES 1 C 199 MET ARG HIS ASP PHE VAL PHE SER GLY VAL ILE MET LEU SEQRES 2 C 199 GLU LEU ASN ALA LYS THR THR ALA LEU VAL VAL ILE ASP SEQRES 3 C 199 LEU GLN GLU GLY ILE LEU PRO PHE ALA GLY GLY PRO HIS SEQRES 4 C 199 THR ALA ASP GLU VAL VAL ASN ARG ALA GLY LYS LEU ALA SEQRES 5 C 199 ALA LYS PHE ARG ALA SER GLY GLN PRO VAL PHE LEU VAL SEQRES 6 C 199 ARG VAL GLY TRP SER ALA ASP TYR ALA GLU ALA LEU LYS SEQRES 7 C 199 GLN PRO VAL ASP ALA PRO SER PRO ALA LYS VAL LEU PRO SEQRES 8 C 199 GLU ASN TRP TRP GLN HIS PRO ALA ALA LEU GLY THR THR SEQRES 9 C 199 ASP SER ASP ILE GLU ILE ILE LYS ARG GLN TRP GLY ALA SEQRES 10 C 199 PHE TYR GLY THR ASP LEU GLU LEU GLN LEU ARG ARG ARG SEQRES 11 C 199 GLY ILE ASP THR ILE VAL LEU CYS GLY ILE SER THR ASN SEQRES 12 C 199 ILE GLY VAL GLU SER THR ALA ARG ASN ALA TRP GLU LEU SEQRES 13 C 199 GLY PHE ASN LEU VAL ILE ALA GLU ASP ALA CYS SER ALA SEQRES 14 C 199 ALA SER ALA GLU GLN HIS ASN ASN SER ILE ASN HIS ILE SEQRES 15 C 199 TYR PRO ARG ILE ALA ARG VAL ARG SER VAL GLU GLU ILE SEQRES 16 C 199 LEU ASN ALA LEU SEQRES 1 D 199 MET ARG HIS ASP PHE VAL PHE SER GLY VAL ILE MET LEU SEQRES 2 D 199 GLU LEU ASN ALA LYS THR THR ALA LEU VAL VAL ILE ASP SEQRES 3 D 199 LEU GLN GLU GLY ILE LEU PRO PHE ALA GLY GLY PRO HIS SEQRES 4 D 199 THR ALA ASP GLU VAL VAL ASN ARG ALA GLY LYS LEU ALA SEQRES 5 D 199 ALA LYS PHE ARG ALA SER GLY GLN PRO VAL PHE LEU VAL SEQRES 6 D 199 ARG VAL GLY TRP SER ALA ASP TYR ALA GLU ALA LEU LYS SEQRES 7 D 199 GLN PRO VAL ASP ALA PRO SER PRO ALA LYS VAL LEU PRO SEQRES 8 D 199 GLU ASN TRP TRP GLN HIS PRO ALA ALA LEU GLY THR THR SEQRES 9 D 199 ASP SER ASP ILE GLU ILE ILE LYS ARG GLN TRP GLY ALA SEQRES 10 D 199 PHE TYR GLY THR ASP LEU GLU LEU GLN LEU ARG ARG ARG SEQRES 11 D 199 GLY ILE ASP THR ILE VAL LEU CYS GLY ILE SER THR ASN SEQRES 12 D 199 ILE GLY VAL GLU SER THR ALA ARG ASN ALA TRP GLU LEU SEQRES 13 D 199 GLY PHE ASN LEU VAL ILE ALA GLU ASP ALA CYS SER ALA SEQRES 14 D 199 ALA SER ALA GLU GLN HIS ASN ASN SER ILE ASN HIS ILE SEQRES 15 D 199 TYR PRO ARG ILE ALA ARG VAL ARG SER VAL GLU GLU ILE SEQRES 16 D 199 LEU ASN ALA LEU HET MPD A1002 8 HET MPD A1004 8 HET MPD B1001 8 HET MPD B1005 8 HET MPD B1006 8 HET MPD B1009 8 HET MPD C1003 8 HET MPD C1008 8 HET MPD C1010 8 HET MPD D1007 8 HET MPD D1011 8 HET MPD D1012 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 MPD 12(C6 H14 O2) FORMUL 17 HOH *924(H2 O) HELIX 1 1 ASN A 16 LYS A 18 5 3 HELIX 2 2 ILE A 31 ALA A 35 5 5 HELIX 3 3 THR A 40 SER A 58 1 19 HELIX 4 4 PRO A 98 GLY A 102 5 5 HELIX 5 5 ASP A 122 ARG A 130 1 9 HELIX 6 6 ILE A 144 LEU A 156 1 13 HELIX 7 7 SER A 171 ILE A 182 1 12 HELIX 8 8 ILE A 182 ALA A 187 1 6 HELIX 9 9 SER A 191 LEU A 199 1 9 HELIX 10 10 ASN B 16 LYS B 18 5 3 HELIX 11 11 ILE B 31 ALA B 35 5 5 HELIX 12 12 THR B 40 SER B 58 1 19 HELIX 13 13 PRO B 98 GLY B 102 5 5 HELIX 14 14 ASP B 122 ARG B 130 1 9 HELIX 15 15 ILE B 144 LEU B 156 1 13 HELIX 16 16 SER B 171 ILE B 182 1 12 HELIX 17 17 ILE B 182 ALA B 187 1 6 HELIX 18 18 SER B 191 LEU B 199 1 9 HELIX 19 19 ASN C 16 LYS C 18 5 3 HELIX 20 20 ILE C 31 ALA C 35 5 5 HELIX 21 21 THR C 40 GLY C 59 1 20 HELIX 22 22 PRO C 98 GLY C 102 5 5 HELIX 23 23 ASP C 122 ARG C 130 1 9 HELIX 24 24 ILE C 144 LEU C 156 1 13 HELIX 25 25 SER C 171 ILE C 182 1 12 HELIX 26 26 ILE C 182 ALA C 187 1 6 HELIX 27 27 SER C 191 LEU C 199 1 9 HELIX 28 28 ASN D 16 LYS D 18 5 3 HELIX 29 29 ILE D 31 ALA D 35 5 5 HELIX 30 30 THR D 40 SER D 58 1 19 HELIX 31 31 PRO D 98 GLY D 102 5 5 HELIX 32 32 ASP D 122 ARG D 130 1 9 HELIX 33 33 ILE D 144 LEU D 156 1 13 HELIX 34 34 SER D 171 ILE D 182 1 12 HELIX 35 35 ILE D 182 ALA D 187 1 6 HELIX 36 36 SER D 191 LEU D 199 1 9 SHEET 1 A 6 ILE A 108 LYS A 112 0 SHEET 2 A 6 VAL A 62 VAL A 67 1 N ARG A 66 O LYS A 112 SHEET 3 A 6 THR A 20 ILE A 25 1 N LEU A 22 O PHE A 63 SHEET 4 A 6 THR A 134 ILE A 140 1 O CYS A 138 N ILE A 25 SHEET 5 A 6 ASN A 159 SER A 168 1 O VAL A 161 N LEU A 137 SHEET 6 A 6 ARG A 188 ARG A 190 1 O ARG A 190 N ILE A 162 SHEET 1 B 6 ILE B 108 LYS B 112 0 SHEET 2 B 6 VAL B 62 VAL B 67 1 N ARG B 66 O LYS B 112 SHEET 3 B 6 THR B 20 ILE B 25 1 N LEU B 22 O PHE B 63 SHEET 4 B 6 THR B 134 ILE B 140 1 O VAL B 136 N VAL B 23 SHEET 5 B 6 ASN B 159 SER B 168 1 O VAL B 161 N LEU B 137 SHEET 6 B 6 ARG B 188 ARG B 190 1 O ARG B 190 N ILE B 162 SHEET 1 C 6 ILE C 108 LYS C 112 0 SHEET 2 C 6 VAL C 62 VAL C 67 1 N ARG C 66 O LYS C 112 SHEET 3 C 6 THR C 20 ILE C 25 1 N LEU C 22 O PHE C 63 SHEET 4 C 6 THR C 134 ILE C 140 1 O VAL C 136 N VAL C 23 SHEET 5 C 6 ASN C 159 SER C 168 1 O VAL C 161 N LEU C 137 SHEET 6 C 6 ARG C 188 ARG C 190 1 O ARG C 190 N ILE C 162 SHEET 1 D 6 ILE D 108 LYS D 112 0 SHEET 2 D 6 VAL D 62 VAL D 67 1 N ARG D 66 O LYS D 112 SHEET 3 D 6 THR D 20 ILE D 25 1 N LEU D 22 O PHE D 63 SHEET 4 D 6 THR D 134 ILE D 140 1 O VAL D 136 N VAL D 23 SHEET 5 D 6 ASN D 159 SER D 168 1 O ASN D 159 N ILE D 135 SHEET 6 D 6 ARG D 188 ARG D 190 1 O ARG D 190 N ILE D 162 CISPEP 1 GLY A 37 PRO A 38 0 1.96 CISPEP 2 ILE A 140 SER A 141 0 2.85 CISPEP 3 GLY B 37 PRO B 38 0 4.07 CISPEP 4 ILE B 140 SER B 141 0 5.96 CISPEP 5 GLY C 37 PRO C 38 0 -0.42 CISPEP 6 ILE C 140 SER C 141 0 1.27 CISPEP 7 GLY D 37 PRO D 38 0 4.58 CISPEP 8 ILE D 140 SER D 141 0 2.60 SITE 1 AC1 6 ILE A 31 PHE A 34 ILE A 144 HOH A1006 SITE 2 AC1 6 ARG B 185 HOH B1233 SITE 1 AC2 3 PHE A 34 SER A 85 PRO A 86 SITE 1 AC3 1 ARG C 66 SITE 1 AC4 7 ARG A 185 HOH A1005 HOH A1101 HOH A1161 SITE 2 AC4 7 ILE B 31 ILE B 144 MPD B1005 SITE 1 AC5 3 MPD A1004 PRO B 86 MPD B1006 SITE 1 AC6 7 TRP B 69 ALA B 76 LEU B 77 SER B 85 SITE 2 AC6 7 ALA B 87 MPD B1005 HOH B1140 SITE 1 AC7 4 PHE C 34 HOH C1013 ARG D 185 HOH D1072 SITE 1 AC8 2 SER C 85 PRO C 86 SITE 1 AC9 3 ARG B 66 TRP B 95 HOH B1165 SITE 1 BC1 4 ARG C 185 HOH C1098 PHE D 34 ILE D 144 SITE 1 BC2 5 TYR D 73 SER D 85 PRO D 86 LYS D 88 SITE 2 BC2 5 LEU D 90 SITE 1 BC3 8 MET D 12 TRP D 69 ALA D 76 LEU D 77 SITE 2 BC3 8 SER D 85 ALA D 87 HOH D1110 HOH D1167 CRYST1 140.502 108.886 50.419 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019834 0.00000