HEADER HYDROLASE 10-JAN-03 1J2S OBSLTE 18-FEB-03 1J2S 1J3G TITLE NMR STRUCTURE OF CITROBACTER FREUNDII AMPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPD; COMPND 5 EC: 3.5.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: AMPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-9A KEYWDS HYDROLASE, CELL WALL EXPDTA NMR, 20 STRUCTURES AUTHOR E.LIEPINSH,C.GENEREUX,D.DEHARENG,B.JORIS,G.OTTING REVDAT 2 18-FEB-03 1J2S 1 OBSLTE REVDAT 1 28-JAN-03 1J2S 0 JRNL AUTH E.LIEPINSH,C.GENEREUX,D.DEHARENG,B.JORIS,G.OTTING JRNL TITL NMR STRUCTURE OF CITROBACTER FREUNDII AMPD, JRNL TITL 2 COMPARISON WITH T7 LYSOZYME AND HOMOLOGY WITH PGRP JRNL TITL 3 DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL 2.6 REMARK 3 AUTHORS : LUGINBUHL, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J2S COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-2003. REMARK 100 THE RCSB ID CODE IS RCSB005558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 SER A 37 N - CA - C ANGL. DEV. =-17.2 DEGREES REMARK 500 3 SER A 37 N - CA - C ANGL. DEV. =-16.2 DEGREES REMARK 500 4 SER A 37 N - CA - C ANGL. DEV. =-15.5 DEGREES REMARK 500 7 SER A 37 N - CA - C ANGL. DEV. =-16.8 DEGREES REMARK 500 9 SER A 37 N - CA - C ANGL. DEV. =-15.7 DEGREES REMARK 500 11 SER A 37 N - CA - C ANGL. DEV. =-16.4 DEGREES REMARK 500 15 SER A 37 N - CA - C ANGL. DEV. =-17.5 DEGREES REMARK 500 16 SER A 37 N - CA - C ANGL. DEV. =-16.5 DEGREES REMARK 500 17 SER A 37 N - CA - C ANGL. DEV. =-15.4 DEGREES REMARK 500 18 SER A 37 N - CA - C ANGL. DEV. =-15.9 DEGREES REMARK 500 19 SER A 37 N - CA - C ANGL. DEV. =-15.8 DEGREES REMARK 500 20 SER A 37 N - CA - C ANGL. DEV. =-17.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 186 -95.43 57.50 REMARK 500 6 MET A 186 -86.02 34.11 REMARK 500 11 MET A 186 -107.93 74.96 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IYA RELATED DB: PDB REMARK 900 1IYA CONTAINS THE SAME PROTEIN STRUCTURE, BUT LESS WELL REMARK 900 REFINED DBREF 1J2S A 1 187 UNP P82974 AMPD_CITFR 1 187 SEQRES 1 A 187 MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG SEQRES 2 A 187 VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU SEQRES 3 A 187 ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO SEQRES 4 A 187 PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE SEQRES 5 A 187 THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA SEQRES 6 A 187 GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE SEQRES 7 A 187 ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP SEQRES 8 A 187 LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY SEQRES 9 A 187 ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU SEQRES 10 A 187 GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR SEQRES 11 A 187 GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG SEQRES 12 A 187 TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN SEQRES 13 A 187 ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE SEQRES 14 A 187 ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER SEQRES 15 A 187 HIS LYS GLU MET THR HET ZN A 210 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLY A 45 GLY A 54 1 10 HELIX 2 2 HIS A 61 ALA A 68 1 8 HELIX 3 3 ASP A 127 TYR A 144 1 18 HELIX 4 4 ALA A 146 ASN A 149 5 4 HELIX 5 5 ASP A 170 VAL A 178 1 9 SHEET 1 A 2 LEU A 3 ASP A 4 0 SHEET 2 A 2 TRP A 7 LEU A 8 -1 O TRP A 7 N ASP A 4 SHEET 1 B 5 ARG A 12 ARG A 13 0 SHEET 2 B 5 GLU A 83 GLN A 86 1 O GLN A 86 N ARG A 12 SHEET 3 B 5 CYS A 76 ARG A 79 -1 N LEU A 77 O VAL A 85 SHEET 4 B 5 GLU A 116 GLU A 118 1 O GLU A 118 N ILE A 78 SHEET 5 B 5 ASN A 35 ILE A 36 1 N ILE A 36 O LEU A 117 SHEET 1 C 2 LEU A 31 VAL A 32 0 SHEET 2 C 2 MET A 151 THR A 152 1 O THR A 152 N LEU A 31 SHEET 1 D 2 SER A 100 TYR A 102 0 SHEET 2 D 2 ARG A 105 ARG A 107 -1 O ARG A 107 N SER A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1