HEADER LYASE 15-JAN-03 1J2Y TITLE CRYSTAL STRUCTURE OF THE TYPE II 3-DEHYDROQUINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYPE II 3-DEHYDROQUINASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: AROQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LYASE, 3-DEHYDROQUINASE EXPDTA X-RAY DIFFRACTION AUTHOR B.I.LEE,J.E.KWAK,S.W.SUH REVDAT 4 25-OCT-23 1J2Y 1 REMARK REVDAT 3 13-JUL-11 1J2Y 1 VERSN REVDAT 2 24-FEB-09 1J2Y 1 VERSN REVDAT 1 24-JUN-03 1J2Y 0 JRNL AUTH B.I.LEE,J.E.KWAK,S.W.SUH JRNL TITL CRYSTAL STRUCTURE OF THE TYPE II 3-DEHYDROQUINASE FROM JRNL TITL 2 HELICOBACTER PYLORI JRNL REF PROTEINS V. 51 616 2003 JRNL REFN ISSN 0887-3585 JRNL PMID 12784220 JRNL DOI 10.1002/PROT.10415 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 160671.110 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 5133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.900 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 642 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 77 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.510 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.110 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 46.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DHQ.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DHQ.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000005564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2DHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CHOLRIDE, SODIUM REMARK 280 CITRATE, EDTA, 2-MERCAPTOETHANOL, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 49.45500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 49.45500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 49.45500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 49.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS DODECAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Z, X-1, Y+1 AND Y+ REMARK 300 1,Z-1,X AND -X+2, Y, -Z+2 AND -Y+1, Z-1, -X+2 AND -Z+2,X-1,-Y+1 AND REMARK 300 -Z+2, -X+1, Y+1 AND -Y+1,-Z+1,X AND -X+2,-Y,Z AND Y+1, -Z+1, -X+2 REMARK 300 AND X, -Y, -Z+2 AND Z,-X+1, -Y+1 AND REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 31510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 197.82000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 197.82000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 197.82000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 197.82000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 -98.91000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 98.91000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 98.91000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 98.91000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 197.82000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 98.91000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 98.91000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 197.82000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 -98.91000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 98.91000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 98.91000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 -98.91000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 98.91000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 -98.91000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 197.82000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 98.91000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 98.91000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 197.82000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 98.91000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 98.91000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 159 REMARK 465 ASN A 160 REMARK 465 ASN A 161 REMARK 465 PRO A 162 REMARK 465 ILE A 163 REMARK 465 ASN A 164 REMARK 465 ASN A 165 REMARK 465 GLN A 166 REMARK 465 LYS A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 139 CE MET A 139 3757 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 -129.58 -24.96 REMARK 500 ASN A 10 19.08 -49.21 REMARK 500 THR A 36 -6.04 -56.64 REMARK 500 GLN A 40 -73.70 -63.11 REMARK 500 ASN A 42 97.73 -53.11 REMARK 500 ASP A 44 64.27 -63.99 REMARK 500 SER A 68 -36.80 -167.69 REMARK 500 ARG A 109 -155.90 -137.70 REMARK 500 LYS A 156 -36.57 -136.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DQA A 219 DBREF 1J2Y A 1 167 UNP Q48255 AROQ_HELPY 1 167 SEQRES 1 A 167 MET LYS ILE LEU VAL ILE GLN GLY PRO ASN LEU ASN MET SEQRES 2 A 167 LEU GLY HIS ARG ASP PRO ARG LEU TYR GLY MET VAL THR SEQRES 3 A 167 LEU ASP GLN ILE HIS GLU ILE MET GLN THR PHE VAL LYS SEQRES 4 A 167 GLN GLY ASN LEU ASP VAL GLU LEU GLU PHE PHE GLN THR SEQRES 5 A 167 ASN PHE GLU GLY GLU ILE ILE ASP LYS ILE GLN GLU SER SEQRES 6 A 167 VAL GLY SER ASP TYR GLU GLY ILE ILE ILE ASN PRO GLY SEQRES 7 A 167 ALA PHE SER HIS THR SER ILE ALA ILE ALA ASP ALA ILE SEQRES 8 A 167 MET LEU ALA GLY LYS PRO VAL ILE GLU VAL HIS LEU THR SEQRES 9 A 167 ASN ILE GLN ALA ARG GLU GLU PHE ARG LYS ASN SER TYR SEQRES 10 A 167 THR GLY ALA ALA CYS GLY GLY VAL ILE MET GLY PHE GLY SEQRES 11 A 167 PRO LEU GLY TYR ASN MET ALA LEU MET ALA MET VAL ASN SEQRES 12 A 167 ILE LEU ALA GLU MET LYS ALA PHE GLN GLU ALA GLN LYS SEQRES 13 A 167 ASN ASN PRO ASN ASN PRO ILE ASN ASN GLN LYS HET DQA A 219 13 HETNAM DQA 1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID HETSYN DQA 3-DEHYDROQUINIC ACID FORMUL 2 DQA C7 H10 O6 FORMUL 3 HOH *19(H2 O) HELIX 1 1 PRO A 9 LEU A 14 5 6 HELIX 2 2 ASP A 28 GLY A 41 1 14 HELIX 3 3 PHE A 54 SER A 65 1 12 HELIX 4 4 PRO A 77 THR A 83 5 7 HELIX 5 5 SER A 84 ALA A 94 1 11 HELIX 6 6 ASN A 105 ARG A 109 5 5 HELIX 7 7 GLU A 110 LYS A 114 5 5 HELIX 8 8 PRO A 131 GLU A 153 1 23 SHEET 1 A 5 GLU A 46 GLN A 51 0 SHEET 2 A 5 LYS A 2 GLN A 7 1 N GLN A 7 O PHE A 50 SHEET 3 A 5 TYR A 70 ASN A 76 1 O GLU A 71 N LYS A 2 SHEET 4 A 5 VAL A 98 HIS A 102 1 O VAL A 101 N ILE A 75 SHEET 5 A 5 GLY A 124 MET A 127 1 O ILE A 126 N GLU A 100 SITE 1 AC1 11 ARG A 17 TYR A 22 ASN A 76 GLY A 78 SITE 2 AC1 11 HIS A 82 ASP A 89 HIS A 102 LEU A 103 SITE 3 AC1 11 THR A 104 ILE A 106 ARG A 113 CRYST1 98.910 98.910 98.910 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010110 0.00000