data_1J5L # _entry.id 1J5L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J5L pdb_00001j5l 10.2210/pdb1j5l/pdb RCSB RCSB001640 ? ? WWPDB D_1000001640 ? ? BMRB 4754 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-22 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-02-05 5 'Structure model' 2 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_oper_list 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.label_atom_id' 7 4 'Structure model' '_pdbx_database_status.status_code_cs' 8 4 'Structure model' '_pdbx_nmr_software.name' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2002-05-22 _pdbx_database_PDB_obs_spr.pdb_id 1J5L _pdbx_database_PDB_obs_spr.replace_pdb_id 1HZQ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J5L _pdbx_database_status.recvd_initial_deposition_date 2002-05-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type BMRB 4754 'contains 1H chemical shifts and 3JHNHA and 3JHAHB coupling constants' unspecified PDB 1J5M 'contains the minimized average structure of the beta_N domain of this protein' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Munoz, A.' 1 'Forsterling, F.H.' 2 'Shaw III, C.F.' 3 'Petering, D.H.' 4 # _citation.id primary _citation.title ;Structure of the (113)Cd(3)beta domains from Homarus americanus metallothionein-1: hydrogen bonding and solvent accessibility of sulfur atoms ; _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 7 _citation.page_first 713 _citation.page_last 724 _citation.year 2002 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12203008 _citation.pdbx_database_id_DOI 10.1007/s00775-002-0345-3 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Munoz, A.' 1 ? primary 'Forsterling, F.H.' 2 ? primary 'Shaw III, C.F.' 3 ? primary 'Petering, D.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn METALLOTHIONEIN-1 3133.726 1 ? ? 'BETA_C DOMAIN (RESIDUES 29-58)' ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CUMT-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PCEKCTSGCKCPSKDECAKTCSKPCSCCPT _entity_poly.pdbx_seq_one_letter_code_can PCEKCTSGCKCPSKDECAKTCSKPCSCCPT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CADMIUM ION' _pdbx_entity_nonpoly.comp_id CD # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 CYS n 1 3 GLU n 1 4 LYS n 1 5 CYS n 1 6 THR n 1 7 SER n 1 8 GLY n 1 9 CYS n 1 10 LYS n 1 11 CYS n 1 12 PRO n 1 13 SER n 1 14 LYS n 1 15 ASP n 1 16 GLU n 1 17 CYS n 1 18 ALA n 1 19 LYS n 1 20 THR n 1 21 CYS n 1 22 SER n 1 23 LYS n 1 24 PRO n 1 25 CYS n 1 26 SER n 1 27 CYS n 1 28 CYS n 1 29 PRO n 1 30 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized. The sequence of the peptide is naturally found in Homarus americanus (American lobster).' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 CYS 2 3 3 CYS CYS A . n A 1 3 GLU 3 4 4 GLU GLU A . n A 1 4 LYS 4 5 5 LYS LYS A . n A 1 5 CYS 5 6 6 CYS CYS A . n A 1 6 THR 6 7 7 THR THR A . n A 1 7 SER 7 8 8 SER SER A . n A 1 8 GLY 8 9 9 GLY GLY A . n A 1 9 CYS 9 10 10 CYS CYS A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 CYS 11 12 12 CYS CYS A . n A 1 12 PRO 12 13 13 PRO PRO A . n A 1 13 SER 13 14 14 SER SER A . n A 1 14 LYS 14 15 15 LYS LYS A . n A 1 15 ASP 15 16 16 ASP ASP A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 CYS 17 18 18 CYS CYS A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 LYS 19 20 20 LYS LYS A . n A 1 20 THR 20 21 21 THR THR A . n A 1 21 CYS 21 22 22 CYS CYS A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 LYS 23 24 24 LYS LYS A . n A 1 24 PRO 24 25 25 PRO PRO A . n A 1 25 CYS 25 26 26 CYS CYS A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 CYS 27 28 28 CYS CYS A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 PRO 29 30 30 PRO PRO A . n A 1 30 THR 30 31 31 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 32 32 CD CD A . C 2 CD 1 33 33 CD CD A . D 2 CD 1 34 34 CD CD A . # _exptl.entry_id 1J5L _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1J5L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1J5L _struct.title 'NMR STRUCTURE OF THE ISOLATED BETA_C DOMAIN OF LOBSTER METALLOTHIONEIN-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J5L _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'beta-domain, Metalloprotein, Cadmium-sulfur-cluster, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MT1_HOMAM _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P29499 _struct_ref.pdbx_seq_one_letter_code PCEKCTSGCKCPSKDECAKTCSKPCSCCPT _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J5L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29499 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 58 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 31 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 2 ? THR A 6 ? CYS A 3 THR A 7 5 ? 5 HELX_P HELX_P2 2 GLU A 16 ? CYS A 21 ? GLU A 17 CYS A 22 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 2 SG ? ? ? 1_555 D CD . CD ? ? A CYS 3 A CD 34 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc2 metalc ? ? A CYS 5 SG ? ? ? 1_555 C CD . CD ? ? A CYS 6 A CD 33 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc3 metalc ? ? A CYS 5 SG ? ? ? 1_555 D CD . CD ? ? A CYS 6 A CD 34 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc4 metalc ? ? A CYS 9 SG ? ? ? 1_555 C CD . CD ? ? A CYS 10 A CD 33 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc5 metalc ? ? A CYS 11 SG ? ? ? 1_555 B CD . CD ? ? A CYS 12 A CD 32 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc6 metalc ? ? A CYS 17 SG ? ? ? 1_555 B CD . CD ? ? A CYS 18 A CD 32 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc7 metalc ? ? A CYS 21 SG ? ? ? 1_555 B CD . CD ? ? A CYS 22 A CD 32 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc8 metalc ? ? A CYS 21 SG ? ? ? 1_555 D CD . CD ? ? A CYS 22 A CD 34 1_555 ? ? ? ? ? ? ? 2.537 ? ? metalc9 metalc ? ? A CYS 25 SG ? ? ? 1_555 D CD . CD ? ? A CYS 26 A CD 34 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc10 metalc ? ? A CYS 27 SG ? ? ? 1_555 C CD . CD ? ? A CYS 28 A CD 33 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc11 metalc ? ? A CYS 28 SG ? ? ? 1_555 B CD . CD ? ? A CYS 29 A CD 32 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc12 metalc ? ? A CYS 28 SG ? ? ? 1_555 C CD . CD ? ? A CYS 29 A CD 33 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc13 metalc ? ? A CYS 28 N ? ? ? 1_555 C CD . CD ? ? A CYS 29 A CD 33 1_555 ? ? ? ? ? ? ? 2.888 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 2 ? A CYS 3 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 5 ? A CYS 6 ? 1_555 108.4 ? 2 SG ? A CYS 2 ? A CYS 3 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 21 ? A CYS 22 ? 1_555 110.2 ? 3 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 21 ? A CYS 22 ? 1_555 104.9 ? 4 SG ? A CYS 2 ? A CYS 3 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 25 ? A CYS 26 ? 1_555 108.2 ? 5 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 25 ? A CYS 26 ? 1_555 114.6 ? 6 SG ? A CYS 21 ? A CYS 22 ? 1_555 CD ? D CD . ? A CD 34 ? 1_555 SG ? A CYS 25 ? A CYS 26 ? 1_555 110.5 ? 7 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 9 ? A CYS 10 ? 1_555 107.6 ? 8 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 27 ? A CYS 28 ? 1_555 106.7 ? 9 SG ? A CYS 9 ? A CYS 10 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 27 ? A CYS 28 ? 1_555 111.5 ? 10 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 108.7 ? 11 SG ? A CYS 9 ? A CYS 10 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 112.7 ? 12 SG ? A CYS 27 ? A CYS 28 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 109.5 ? 13 SG ? A CYS 5 ? A CYS 6 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 N ? A CYS 28 ? A CYS 29 ? 1_555 169.8 ? 14 SG ? A CYS 9 ? A CYS 10 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 N ? A CYS 28 ? A CYS 29 ? 1_555 73.6 ? 15 SG ? A CYS 27 ? A CYS 28 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 N ? A CYS 28 ? A CYS 29 ? 1_555 81.8 ? 16 SG ? A CYS 28 ? A CYS 29 ? 1_555 CD ? C CD . ? A CD 33 ? 1_555 N ? A CYS 28 ? A CYS 29 ? 1_555 62.3 ? 17 SG ? A CYS 11 ? A CYS 12 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 17 ? A CYS 18 ? 1_555 110.4 ? 18 SG ? A CYS 11 ? A CYS 12 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 21 ? A CYS 22 ? 1_555 108.4 ? 19 SG ? A CYS 17 ? A CYS 18 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 21 ? A CYS 22 ? 1_555 109.0 ? 20 SG ? A CYS 11 ? A CYS 12 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 107.7 ? 21 SG ? A CYS 17 ? A CYS 18 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 109.4 ? 22 SG ? A CYS 21 ? A CYS 22 ? 1_555 CD ? B CD . ? A CD 32 ? 1_555 SG ? A CYS 28 ? A CYS 29 ? 1_555 111.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 32 ? 4 'BINDING SITE FOR RESIDUE CD A 32' AC2 Software A CD 33 ? 5 'BINDING SITE FOR RESIDUE CD A 33' AC3 Software A CD 34 ? 4 'BINDING SITE FOR RESIDUE CD A 34' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 11 ? CYS A 12 . ? 1_555 ? 2 AC1 4 CYS A 17 ? CYS A 18 . ? 1_555 ? 3 AC1 4 CYS A 21 ? CYS A 22 . ? 1_555 ? 4 AC1 4 CYS A 28 ? CYS A 29 . ? 1_555 ? 5 AC2 5 CYS A 5 ? CYS A 6 . ? 1_555 ? 6 AC2 5 CYS A 9 ? CYS A 10 . ? 1_555 ? 7 AC2 5 CYS A 25 ? CYS A 26 . ? 1_555 ? 8 AC2 5 CYS A 27 ? CYS A 28 . ? 1_555 ? 9 AC2 5 CYS A 28 ? CYS A 29 . ? 1_555 ? 10 AC3 4 CYS A 2 ? CYS A 3 . ? 1_555 ? 11 AC3 4 CYS A 5 ? CYS A 6 . ? 1_555 ? 12 AC3 4 CYS A 21 ? CYS A 22 . ? 1_555 ? 13 AC3 4 CYS A 25 ? CYS A 26 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 3 ? ? -80.59 -146.15 2 1 LYS A 5 ? ? -94.76 42.72 3 1 SER A 8 ? ? 173.39 -86.23 4 1 CYS A 12 ? ? 32.33 93.27 5 1 SER A 14 ? ? -153.94 -58.57 6 1 LYS A 15 ? ? -164.01 -44.02 7 1 CYS A 18 ? ? -90.21 -74.42 8 1 SER A 23 ? ? -78.46 49.85 9 1 LYS A 24 ? ? 176.18 179.93 10 1 CYS A 26 ? ? -42.15 107.46 11 1 SER A 27 ? ? -60.20 72.50 12 1 CYS A 28 ? ? 178.55 -24.95 13 1 CYS A 29 ? ? -72.95 -160.66 # _pdbx_nmr_ensemble.entry_id 1J5L _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2-3mM 113Cd3-MT-beta_C, 5mM d-Tris buffer' '90% H2O/10% D2O' 2 '2-3mM 113Cd3-MT-beta_C, 5mM d-Tris buffer' '100% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '5mM Tris' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D NOESY' 3 1 1 '2D TOCSY' 4 1 1 '2D 113Cd HSQC-TOCSY' 5 2 1 '2D NOESY' 6 2 1 DQF-COSY # _pdbx_nmr_details.entry_id 1J5L _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_refine.entry_id 1J5L _pdbx_nmr_refine.method 'ab initio simulated annealing' _pdbx_nmr_refine.details ;The structure is based on 228 NOE based distance restraints, 20 dihedral angle restraints and 33 metal cluster restraints derived from 113Cd-HSQC-TOCSY experiments. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.5 collection 'Bruker Instruments' 1 XwinNMR 2.5 processing 'Bruker Instruments' 2 Felix 2000 'data analysis' MSI 3 X-PLOR 3.851 'structure solution' 'Axel Brunger' 4 MOLMOL 2k.1 'data analysis' 'Reto Koradi' 5 X-PLOR 3.851 refinement 'Axel Brunger' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 CD CD CD N N 30 CYS N N N N 31 CYS CA C N R 32 CYS C C N N 33 CYS O O N N 34 CYS CB C N N 35 CYS SG S N N 36 CYS OXT O N N 37 CYS H H N N 38 CYS H2 H N N 39 CYS HA H N N 40 CYS HB2 H N N 41 CYS HB3 H N N 42 CYS HG H N N 43 CYS HXT H N N 44 GLU N N N N 45 GLU CA C N S 46 GLU C C N N 47 GLU O O N N 48 GLU CB C N N 49 GLU CG C N N 50 GLU CD C N N 51 GLU OE1 O N N 52 GLU OE2 O N N 53 GLU OXT O N N 54 GLU H H N N 55 GLU H2 H N N 56 GLU HA H N N 57 GLU HB2 H N N 58 GLU HB3 H N N 59 GLU HG2 H N N 60 GLU HG3 H N N 61 GLU HE2 H N N 62 GLU HXT H N N 63 GLY N N N N 64 GLY CA C N N 65 GLY C C N N 66 GLY O O N N 67 GLY OXT O N N 68 GLY H H N N 69 GLY H2 H N N 70 GLY HA2 H N N 71 GLY HA3 H N N 72 GLY HXT H N N 73 LYS N N N N 74 LYS CA C N S 75 LYS C C N N 76 LYS O O N N 77 LYS CB C N N 78 LYS CG C N N 79 LYS CD C N N 80 LYS CE C N N 81 LYS NZ N N N 82 LYS OXT O N N 83 LYS H H N N 84 LYS H2 H N N 85 LYS HA H N N 86 LYS HB2 H N N 87 LYS HB3 H N N 88 LYS HG2 H N N 89 LYS HG3 H N N 90 LYS HD2 H N N 91 LYS HD3 H N N 92 LYS HE2 H N N 93 LYS HE3 H N N 94 LYS HZ1 H N N 95 LYS HZ2 H N N 96 LYS HZ3 H N N 97 LYS HXT H N N 98 PRO N N N N 99 PRO CA C N S 100 PRO C C N N 101 PRO O O N N 102 PRO CB C N N 103 PRO CG C N N 104 PRO CD C N N 105 PRO OXT O N N 106 PRO H H N N 107 PRO HA H N N 108 PRO HB2 H N N 109 PRO HB3 H N N 110 PRO HG2 H N N 111 PRO HG3 H N N 112 PRO HD2 H N N 113 PRO HD3 H N N 114 PRO HXT H N N 115 SER N N N N 116 SER CA C N S 117 SER C C N N 118 SER O O N N 119 SER CB C N N 120 SER OG O N N 121 SER OXT O N N 122 SER H H N N 123 SER H2 H N N 124 SER HA H N N 125 SER HB2 H N N 126 SER HB3 H N N 127 SER HG H N N 128 SER HXT H N N 129 THR N N N N 130 THR CA C N S 131 THR C C N N 132 THR O O N N 133 THR CB C N R 134 THR OG1 O N N 135 THR CG2 C N N 136 THR OXT O N N 137 THR H H N N 138 THR H2 H N N 139 THR HA H N N 140 THR HB H N N 141 THR HG1 H N N 142 THR HG21 H N N 143 THR HG22 H N N 144 THR HG23 H N N 145 THR HXT H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 CYS N CA sing N N 28 CYS N H sing N N 29 CYS N H2 sing N N 30 CYS CA C sing N N 31 CYS CA CB sing N N 32 CYS CA HA sing N N 33 CYS C O doub N N 34 CYS C OXT sing N N 35 CYS CB SG sing N N 36 CYS CB HB2 sing N N 37 CYS CB HB3 sing N N 38 CYS SG HG sing N N 39 CYS OXT HXT sing N N 40 GLU N CA sing N N 41 GLU N H sing N N 42 GLU N H2 sing N N 43 GLU CA C sing N N 44 GLU CA CB sing N N 45 GLU CA HA sing N N 46 GLU C O doub N N 47 GLU C OXT sing N N 48 GLU CB CG sing N N 49 GLU CB HB2 sing N N 50 GLU CB HB3 sing N N 51 GLU CG CD sing N N 52 GLU CG HG2 sing N N 53 GLU CG HG3 sing N N 54 GLU CD OE1 doub N N 55 GLU CD OE2 sing N N 56 GLU OE2 HE2 sing N N 57 GLU OXT HXT sing N N 58 GLY N CA sing N N 59 GLY N H sing N N 60 GLY N H2 sing N N 61 GLY CA C sing N N 62 GLY CA HA2 sing N N 63 GLY CA HA3 sing N N 64 GLY C O doub N N 65 GLY C OXT sing N N 66 GLY OXT HXT sing N N 67 LYS N CA sing N N 68 LYS N H sing N N 69 LYS N H2 sing N N 70 LYS CA C sing N N 71 LYS CA CB sing N N 72 LYS CA HA sing N N 73 LYS C O doub N N 74 LYS C OXT sing N N 75 LYS CB CG sing N N 76 LYS CB HB2 sing N N 77 LYS CB HB3 sing N N 78 LYS CG CD sing N N 79 LYS CG HG2 sing N N 80 LYS CG HG3 sing N N 81 LYS CD CE sing N N 82 LYS CD HD2 sing N N 83 LYS CD HD3 sing N N 84 LYS CE NZ sing N N 85 LYS CE HE2 sing N N 86 LYS CE HE3 sing N N 87 LYS NZ HZ1 sing N N 88 LYS NZ HZ2 sing N N 89 LYS NZ HZ3 sing N N 90 LYS OXT HXT sing N N 91 PRO N CA sing N N 92 PRO N CD sing N N 93 PRO N H sing N N 94 PRO CA C sing N N 95 PRO CA CB sing N N 96 PRO CA HA sing N N 97 PRO C O doub N N 98 PRO C OXT sing N N 99 PRO CB CG sing N N 100 PRO CB HB2 sing N N 101 PRO CB HB3 sing N N 102 PRO CG CD sing N N 103 PRO CG HG2 sing N N 104 PRO CG HG3 sing N N 105 PRO CD HD2 sing N N 106 PRO CD HD3 sing N N 107 PRO OXT HXT sing N N 108 SER N CA sing N N 109 SER N H sing N N 110 SER N H2 sing N N 111 SER CA C sing N N 112 SER CA CB sing N N 113 SER CA HA sing N N 114 SER C O doub N N 115 SER C OXT sing N N 116 SER CB OG sing N N 117 SER CB HB2 sing N N 118 SER CB HB3 sing N N 119 SER OG HG sing N N 120 SER OXT HXT sing N N 121 THR N CA sing N N 122 THR N H sing N N 123 THR N H2 sing N N 124 THR CA C sing N N 125 THR CA CB sing N N 126 THR CA HA sing N N 127 THR C O doub N N 128 THR C OXT sing N N 129 THR CB OG1 sing N N 130 THR CB CG2 sing N N 131 THR CB HB sing N N 132 THR OG1 HG1 sing N N 133 THR CG2 HG21 sing N N 134 THR CG2 HG22 sing N N 135 THR CG2 HG23 sing N N 136 THR OXT HXT sing N N 137 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Bruker DPX 300 # _atom_sites.entry_id 1J5L _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD H N O S # loop_