HEADER OXIDOREDUCTASE 03-JUL-02 1J5R OBSLTE 10-JUN-03 1J5R 1O2D TITLE CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE (TM0920) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: TM0920; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0920, ALCOHOL DEHYDROGENASE, STRUCTURAL GENOMICS, JCSG EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS REVDAT 2 10-JUN-03 1J5R 1 OBSLTE REVDAT 1 31-JUL-02 1J5R 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS JRNL TITL CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE JRNL TITL 2 (TM0920) FROM THERMOTOGA MARITIMA AT 1.4 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 122290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6684 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9478 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 532 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.45 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.680 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.433 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.028 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.844 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 KSOL : 0.78 REMARK 3 BSOL : 250.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFMAC WAS ALSO USED FOR REFINEMENT REMARK 4 REMARK 4 1J5R COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-2002. REMARK 100 THE RCSB ID CODE IS RCSB001646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-2002 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : 11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90496 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : MOSFLM, SCALA, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SNB, MLPHARE, CCP4, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-300, 10% GLYCEROL, 0.1M REMARK 280 TRIS PH 8.5 5% (W/V) PEG-8000, PH 8.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O VAL B 116 O HOH 317 0.88 REMARK 500 NZ LYS B 29 O HOH 303 1.54 REMARK 500 C VAL B 116 O HOH 317 1.54 REMARK 500 OE2 GLU A 80 O HOH 635 1.67 REMARK 500 OE2 GLU B 325 O HOH 206 1.75 REMARK 500 OE1 GLU A 117 O HOH 59 1.76 REMARK 500 O HOH 59 O HOH 437 1.86 REMARK 500 OD1 ASP B 294 O HOH 456 1.93 REMARK 500 OH TYR A 260 O HOH 194 1.95 REMARK 500 O HOH 288 O HOH 528 1.95 REMARK 500 O HOH 82 O HOH 385 1.96 REMARK 500 N MET B 1 O HOH 62 1.97 REMARK 500 O HOH 44 O HOH 369 1.97 REMARK 500 O HOH 206 O HOH 341 1.99 REMARK 500 O HOH 267 O HOH 637 1.99 REMARK 500 O HOH 184 O HOH 583 2.01 REMARK 500 SD MET B 178 O HOH 390 2.02 REMARK 500 O HOH 94 O HOH 499 2.03 REMARK 500 O HOH 36 O HOH 129 2.05 REMARK 500 ND2 ASN B 156 O HOH 667 2.07 REMARK 500 O HOH 399 O HOH 615 2.08 REMARK 500 OE2 GLU A 117 O HOH 579 2.09 REMARK 500 SD MET B 99 O HOH 29 2.10 REMARK 500 O HOH 327 O HOH 535 2.10 REMARK 500 O HOH 490 O HOH 557 2.11 REMARK 500 SD MET A 99 O HOH 87 2.12 REMARK 500 O HOH 331 O HOH 672 2.14 REMARK 500 CG LYS B 126 O HOH 643 2.16 REMARK 500 O HOH 53 O HOH 430 2.16 REMARK 500 O HOH 450 O HOH 520 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 1 CD1 ILE B 16 2657 1.89 REMARK 500 O HOH 299 O HOH 343 1565 1.98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 6 SD MET A 6 CE 0.129 REMARK 500 MET A 99 CG MET A 99 SD 0.164 REMARK 500 MET A 99 SD MET A 99 CE -0.305 REMARK 500 MET A 178 CG MET A 178 SD 0.134 REMARK 500 MET A 178 SD MET A 178 CE 0.142 REMARK 500 MET A 215 CG MET A 215 SD 0.170 REMARK 500 MET A 236 CG MET A 236 SD 0.127 REMARK 500 MET A 236 SD MET A 236 CE 0.158 REMARK 500 MET A 245 SD MET A 245 CE -0.183 REMARK 500 MET A 276 SD MET A 276 CE -0.369 REMARK 500 MET A 282 CG MET A 282 SD 0.118 REMARK 500 MET A 282 SD MET A 282 CE -0.139 REMARK 500 MET A 285 SD MET A 285 CE -0.326 REMARK 500 MET B 6 CG MET B 6 SD 0.136 REMARK 500 MET B 99 CG MET B 99 SD 0.144 REMARK 500 MET B 99 SD MET B 99 CE -0.681 REMARK 500 MET B 178 CG MET B 178 SD 0.120 REMARK 500 MET B 178 SD MET B 178 CE -0.276 REMARK 500 MET B 236 SD MET B 236 CE 0.154 REMARK 500 MET B 245 CG MET B 245 SD 0.126 REMARK 500 MET B 245 SD MET B 245 CE -0.196 REMARK 500 MET B 276 SD MET B 276 CE -0.253 REMARK 500 MET B 285 SD MET B 285 CE -0.467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 139 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 MET A 276 CG - SD - CE ANGL. DEV. =-11.1 DEGREES REMARK 500 MET A 282 CG - SD - CE ANGL. DEV. =-11.6 DEGREES REMARK 500 VAL A 359 CA - C - O ANGL. DEV. = 13.8 DEGREES REMARK 500 GLY B 139 CA - C - O ANGL. DEV. =-11.2 DEGREES REMARK 500 ALA B 138 CA - C - N ANGL. DEV. = -8.5 DEGREES REMARK 500 GLY B 139 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 GLY B 139 CA - C - N ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 138 GLY A 139 -96.73 REMARK 500 GLY B 139 THR B 140 -146.44 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 176 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH 284 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH 333 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH 343 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH 542 DISTANCE = 6.21 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE METAL FE+2 COULD ALSO BE ZN+2. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: FEA REMARK 800 SITE_DESCRIPTION: ACTIVE SITE WITH ONE NADP+ AND ONE METAL ION REMARK 800 (STRONG PEAK AND ANOMALOUS SIGNAL) REMARK 800 SITE_IDENTIFIER: FEB REMARK 800 SITE_DESCRIPTION: ACTIVE SITE WITH ONE NADP+ AND ONE METAL ION REMARK 800 (STRONG PEAK AND ANOMALOUS SIGNAL) REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TM0920 RELATED DB: TIGR REMARK 900 RELATED ID: 1KQ3 RELATED DB: PDB REMARK 900 TM0920 IS HOMOLOGOUS TO ENTRY TM0423(1KQ3) AND SHARES 11% REMARK 900 SEQUENCE IDENTITY IN 312 RESIDUES. REMARK 900 RELATED ID: 1JQ5 RELATED DB: PDB REMARK 900 TM0920 IS HOMOLOGOUS TO ENTRY 1JQ5 AND SHARES 20% SEQUENCE REMARK 900 IDENTITY IN 319 RESIDUES. REMARK 900 RELATED ID: 1DQS RELATED DB: PDB REMARK 900 TM0920 IS HOMOLOGOUS TO ENTRY 1DQS AND SHARES 15% SEQUENCE REMARK 900 IDENTITY IN 288 RESIDUES. DBREF 1J5R A 1 359 GB 4981457 AAD36001 1 359 DBREF 1J5R B 1 359 GB 4981457 AAD36001 1 359 SEQADV 1J5R MET A -11 GB 4981457 LEADER SEQUENCE SEQADV 1J5R GLY A -10 GB 4981457 LEADER SEQUENCE SEQADV 1J5R SER A -9 GB 4981457 LEADER SEQUENCE SEQADV 1J5R ASP A -8 GB 4981457 LEADER SEQUENCE SEQADV 1J5R LYS A -7 GB 4981457 LEADER SEQUENCE SEQADV 1J5R ILE A -6 GB 4981457 LEADER SEQUENCE SEQADV 1J5R HIS A -5 GB 4981457 HIS TAG SEQADV 1J5R HIS A -4 GB 4981457 HIS TAG SEQADV 1J5R HIS A -3 GB 4981457 HIS TAG SEQADV 1J5R HIS A -2 GB 4981457 HIS TAG SEQADV 1J5R HIS A -1 GB 4981457 HIS TAG SEQADV 1J5R HIS A 0 GB 4981457 HIS TAG SEQADV 1J5R MET B -11 GB 4981457 LEADER SEQUENCE SEQADV 1J5R GLY B -10 GB 4981457 LEADER SEQUENCE SEQADV 1J5R SER B -9 GB 4981457 LEADER SEQUENCE SEQADV 1J5R ASP B -8 GB 4981457 LEADER SEQUENCE SEQADV 1J5R LYS B -7 GB 4981457 LEADER SEQUENCE SEQADV 1J5R ILE B -6 GB 4981457 LEADER SEQUENCE SEQADV 1J5R HIS B -5 GB 4981457 HIS TAG SEQADV 1J5R HIS B -4 GB 4981457 HIS TAG SEQADV 1J5R HIS B -3 GB 4981457 HIS TAG SEQADV 1J5R HIS B -2 GB 4981457 HIS TAG SEQADV 1J5R HIS B -1 GB 4981457 HIS TAG SEQADV 1J5R HIS B 0 GB 4981457 HIS TAG SEQRES 1 A 371 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 371 TRP GLU PHE TYR MET PRO THR ASP VAL PHE PHE GLY GLU SEQRES 3 A 371 LYS ILE LEU GLU LYS ARG GLY ASN ILE ILE ASP LEU LEU SEQRES 4 A 371 GLY LYS ARG ALA LEU VAL VAL THR GLY LYS SER SER SER SEQRES 5 A 371 LYS LYS ASN GLY SER LEU ASP ASP LEU LYS LYS LEU LEU SEQRES 6 A 371 ASP GLU THR GLU ILE SER TYR GLU ILE PHE ASP GLU VAL SEQRES 7 A 371 GLU GLU ASN PRO SER PHE ASP ASN VAL MET LYS ALA VAL SEQRES 8 A 371 GLU ARG TYR ARG ASN ASP SER PHE ASP PHE VAL VAL GLY SEQRES 9 A 371 LEU GLY GLY GLY SER PRO MET ASP PHE ALA LYS ALA VAL SEQRES 10 A 371 ALA VAL LEU LEU LYS GLU LYS ASP LEU SER VAL GLU ASP SEQRES 11 A 371 LEU TYR ASP ARG GLU LYS VAL LYS HIS TRP LEU PRO VAL SEQRES 12 A 371 VAL GLU ILE PRO THR THR ALA GLY THR GLY SER GLU VAL SEQRES 13 A 371 THR PRO TYR SER ILE LEU THR ASP PRO GLU GLY ASN LYS SEQRES 14 A 371 ARG GLY CYS THR LEU MET PHE PRO VAL TYR ALA PHE LEU SEQRES 15 A 371 ASP PRO ARG TYR THR TYR SER MET SER ASP GLU LEU THR SEQRES 16 A 371 LEU SER THR GLY VAL ASP ALA LEU SER HIS ALA VAL GLU SEQRES 17 A 371 GLY TYR LEU SER ARG LYS SER THR PRO PRO SER ASP ALA SEQRES 18 A 371 LEU ALA ILE GLU ALA MET LYS ILE ILE HIS ARG ASN LEU SEQRES 19 A 371 PRO LYS ALA ILE GLU GLY ASN ARG GLU ALA ARG LYS LYS SEQRES 20 A 371 MET PHE VAL ALA SER CYS LEU ALA GLY MET VAL ILE ALA SEQRES 21 A 371 GLN THR GLY THR THR LEU ALA HIS ALA LEU GLY TYR PRO SEQRES 22 A 371 LEU THR THR GLU LYS GLY ILE LYS HIS GLY LYS ALA THR SEQRES 23 A 371 GLY MET VAL LEU PRO PHE VAL MET GLU VAL MET LYS GLU SEQRES 24 A 371 GLU ILE PRO GLU LYS VAL ASP THR VAL ASN HIS ILE PHE SEQRES 25 A 371 GLY GLY SER LEU LEU LYS PHE LEU LYS GLU LEU GLY LEU SEQRES 26 A 371 TYR GLU LYS VAL ALA VAL SER SER GLU GLU LEU GLU LYS SEQRES 27 A 371 TRP VAL GLU LYS GLY SER ARG ALA LYS HIS LEU LYS ASN SEQRES 28 A 371 THR PRO GLY THR PHE THR PRO GLU LYS ILE ARG ASN ILE SEQRES 29 A 371 TYR ARG GLU ALA LEU GLY VAL SEQRES 1 B 371 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 371 TRP GLU PHE TYR MET PRO THR ASP VAL PHE PHE GLY GLU SEQRES 3 B 371 LYS ILE LEU GLU LYS ARG GLY ASN ILE ILE ASP LEU LEU SEQRES 4 B 371 GLY LYS ARG ALA LEU VAL VAL THR GLY LYS SER SER SER SEQRES 5 B 371 LYS LYS ASN GLY SER LEU ASP ASP LEU LYS LYS LEU LEU SEQRES 6 B 371 ASP GLU THR GLU ILE SER TYR GLU ILE PHE ASP GLU VAL SEQRES 7 B 371 GLU GLU ASN PRO SER PHE ASP ASN VAL MET LYS ALA VAL SEQRES 8 B 371 GLU ARG TYR ARG ASN ASP SER PHE ASP PHE VAL VAL GLY SEQRES 9 B 371 LEU GLY GLY GLY SER PRO MET ASP PHE ALA LYS ALA VAL SEQRES 10 B 371 ALA VAL LEU LEU LYS GLU LYS ASP LEU SER VAL GLU ASP SEQRES 11 B 371 LEU TYR ASP ARG GLU LYS VAL LYS HIS TRP LEU PRO VAL SEQRES 12 B 371 VAL GLU ILE PRO THR THR ALA GLY THR GLY SER GLU VAL SEQRES 13 B 371 THR PRO TYR SER ILE LEU THR ASP PRO GLU GLY ASN LYS SEQRES 14 B 371 ARG GLY CYS THR LEU MET PHE PRO VAL TYR ALA PHE LEU SEQRES 15 B 371 ASP PRO ARG TYR THR TYR SER MET SER ASP GLU LEU THR SEQRES 16 B 371 LEU SER THR GLY VAL ASP ALA LEU SER HIS ALA VAL GLU SEQRES 17 B 371 GLY TYR LEU SER ARG LYS SER THR PRO PRO SER ASP ALA SEQRES 18 B 371 LEU ALA ILE GLU ALA MET LYS ILE ILE HIS ARG ASN LEU SEQRES 19 B 371 PRO LYS ALA ILE GLU GLY ASN ARG GLU ALA ARG LYS LYS SEQRES 20 B 371 MET PHE VAL ALA SER CYS LEU ALA GLY MET VAL ILE ALA SEQRES 21 B 371 GLN THR GLY THR THR LEU ALA HIS ALA LEU GLY TYR PRO SEQRES 22 B 371 LEU THR THR GLU LYS GLY ILE LYS HIS GLY LYS ALA THR SEQRES 23 B 371 GLY MET VAL LEU PRO PHE VAL MET GLU VAL MET LYS GLU SEQRES 24 B 371 GLU ILE PRO GLU LYS VAL ASP THR VAL ASN HIS ILE PHE SEQRES 25 B 371 GLY GLY SER LEU LEU LYS PHE LEU LYS GLU LEU GLY LEU SEQRES 26 B 371 TYR GLU LYS VAL ALA VAL SER SER GLU GLU LEU GLU LYS SEQRES 27 B 371 TRP VAL GLU LYS GLY SER ARG ALA LYS HIS LEU LYS ASN SEQRES 28 B 371 THR PRO GLY THR PHE THR PRO GLU LYS ILE ARG ASN ILE SEQRES 29 B 371 TYR ARG GLU ALA LEU GLY VAL HET FE A 901 1 HET FE B 902 1 HET NAP 800 48 HET NAP 801 48 HETNAM FE FE (III) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FE 2(FE 3+) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 7 HOH *696(H2 O1) HELIX 1 1 LYS A 15 GLY A 21 1 7 HELIX 2 2 ASN A 22 LEU A 27 5 6 HELIX 3 3 SER A 38 LYS A 42 5 5 HELIX 4 4 GLY A 44 THR A 56 1 13 HELIX 5 5 SER A 71 ARG A 83 1 13 HELIX 6 6 GLY A 95 GLU A 111 1 17 HELIX 7 7 VAL A 116 ASP A 121 5 6 HELIX 8 8 GLY A 141 THR A 145 5 5 HELIX 9 9 ASP A 171 MET A 178 5 8 HELIX 10 10 SER A 179 SER A 200 1 22 HELIX 11 11 THR A 204 GLU A 227 1 24 HELIX 12 12 ASN A 229 GLY A 251 1 23 HELIX 13 13 THR A 253 GLY A 267 1 15 HELIX 14 14 LYS A 269 LYS A 286 1 18 HELIX 15 15 ILE A 289 PHE A 300 1 12 HELIX 16 16 SER A 303 LEU A 311 1 9 HELIX 17 17 SER A 320 ARG A 333 1 14 HELIX 18 18 ALA A 334 THR A 340 5 7 HELIX 19 19 THR A 345 GLY A 358 1 14 HELIX 20 20 LYS B 15 GLY B 21 1 7 HELIX 21 21 ASN B 22 GLY B 28 5 7 HELIX 22 22 SER B 38 LYS B 42 5 5 HELIX 23 23 GLY B 44 THR B 56 1 13 HELIX 24 24 SER B 71 TYR B 82 1 12 HELIX 25 25 GLY B 95 LEU B 109 1 15 HELIX 26 26 GLU B 117 ASP B 121 5 5 HELIX 27 27 GLY B 141 THR B 145 5 5 HELIX 28 28 ASP B 171 MET B 178 5 8 HELIX 29 29 SER B 179 SER B 200 1 22 HELIX 30 30 THR B 204 GLY B 228 1 25 HELIX 31 31 ASN B 229 GLY B 251 1 23 HELIX 32 32 THR B 253 GLY B 267 1 15 HELIX 33 33 LYS B 269 LYS B 286 1 18 HELIX 34 34 ILE B 289 PHE B 300 1 12 HELIX 35 35 SER B 303 LEU B 311 1 9 HELIX 36 36 SER B 320 ARG B 333 1 14 HELIX 37 37 ALA B 334 THR B 340 5 7 HELIX 38 38 THR B 345 GLY B 358 1 14 SHEET 1 A 6 ASP A 9 PHE A 12 0 SHEET 2 A 6 TYR A 167 LEU A 170 1 O LEU A 170 N PHE A 11 SHEET 3 A 6 VAL A 131 PRO A 135 1 N GLU A 133 O TYR A 167 SHEET 4 A 6 PHE A 89 GLY A 94 1 N GLY A 92 O VAL A 132 SHEET 5 A 6 ARG A 30 GLY A 36 1 N LEU A 32 O VAL A 91 SHEET 6 A 6 SER A 59 VAL A 66 1 O PHE A 63 N VAL A 33 SHEET 1 B 2 TYR A 147 THR A 151 0 SHEET 2 B 2 LYS A 157 THR A 161 -1 O ARG A 158 N LEU A 150 SHEET 1 C 6 ASP B 9 PHE B 12 0 SHEET 2 C 6 TYR B 167 LEU B 170 1 O LEU B 170 N PHE B 11 SHEET 3 C 6 VAL B 131 PRO B 135 1 N GLU B 133 O PHE B 169 SHEET 4 C 6 PHE B 89 GLY B 94 1 N GLY B 92 O VAL B 132 SHEET 5 C 6 ARG B 30 GLY B 36 1 N LEU B 32 O VAL B 91 SHEET 6 C 6 SER B 59 VAL B 66 1 O GLU B 61 N VAL B 33 SHEET 1 D 2 TYR B 147 THR B 151 0 SHEET 2 D 2 LYS B 157 THR B 161 -1 O ARG B 158 N LEU B 150 LINK FE FE A 901 OD1 ASP A 189 LINK FE FE A 901 NE2 HIS A 193 LINK FE FE A 901 NE2 HIS A 256 LINK FE FE A 901 NE2 HIS A 270 LINK FE FE B 902 OD1 ASP B 189 LINK FE FE B 902 NE2 HIS B 193 LINK FE FE B 902 NE2 HIS B 256 LINK FE FE B 902 NE2 HIS B 270 SITE 1 FEA 5 ASP A 189 HIS A 193 HIS A 256 HIS A 270 SITE 2 FEA 5 FE A 901 SITE 1 FEB 5 ASP B 189 HIS B 193 HIS B 256 HIS B 270 SITE 2 FEB 5 FE B 902 CRYST1 58.100 85.400 72.200 90.00 96.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017212 0.000000 0.001870 0.00000 SCALE2 0.000000 0.011710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013932 0.00000