HEADER LYASE 03-JUL-02 1J5T TITLE CRYSTAL STRUCTURE OF INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE (TM0140) TITLE 2 FROM THERMOTOGA MARITIMA AT 3.0 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IGPS; COMPND 5 EC: 4.1.1.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0140; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0140, STRUCTURAL GENOMICS, JCSG, INDOLE-3-GLYCEROL PHOSPHATE KEYWDS 2 SYNTHASE, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 1J5T 1 REMARK SEQADV REVDAT 7 18-JUL-18 1J5T 1 REMARK REVDAT 6 13-JUL-11 1J5T 1 VERSN REVDAT 5 24-FEB-09 1J5T 1 VERSN REVDAT 4 28-MAR-06 1J5T 1 JRNL REVDAT 3 18-JAN-05 1J5T 1 AUTHOR KEYWDS REMARK REVDAT 2 08-JUL-03 1J5T 1 REMARK REVDAT 1 31-JUL-02 1J5T 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE JRNL TITL 2 (TM0140) FROM THERMOTOGA MARITIMA AT 3.0 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : STANDARD CNS DICTIONARY/ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 339 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 689 REMARK 3 BIN R VALUE (WORKING SET) : 0.3406 REMARK 3 BIN FREE R VALUE : 0.4452 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 34 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16200 REMARK 3 B22 (A**2) : -3.38200 REMARK 3 B33 (A**2) : 4.54400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.480 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.684 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.028 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.999 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.396 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 36.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE RESIDUES HHH ARE ADDED TO AMINO REMARK 3 TERMINUS OF THE SEQUENCE. DISORDERED AND PARTLY DISORDERED REMARK 3 SIDECHAINS: 12,25,35,36,37,38,51,62,63,66,93, 111,119,120,123, REMARK 3 126,139,142,146,150,164,165,166,173, 181,191,202,213,226 REMARK 4 REMARK 4 1J5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000001648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97591 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6026 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.293 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 200, 0.1M PHOSPHATE-CITRATE PH REMARK 280 4.2, 0.2M NACL, PH 5.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 293K, PH 5.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 58.79830 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.07645 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.53823 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.79830 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.61468 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.61468 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.79830 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.53823 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 58.79830 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.07645 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.79830 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.07645 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.79830 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 61.61468 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 20.53823 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.79830 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 20.53823 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 61.61468 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.79830 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.79830 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 41.07645 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 82.15290 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 82.15290 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 ASP A -9 REMARK 465 LYS A -8 REMARK 465 ILE A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 12 CG CD OE1 OE2 REMARK 480 GLU A 25 CG CD OE1 OE2 REMARK 480 ASP A 35 CB CG OD1 OD2 REMARK 480 ILE A 36 CG1 CG2 CD1 REMARK 480 ASN A 37 CG OD1 ND2 REMARK 480 ALA A 38 CB REMARK 480 GLU A 51 CB CG CD OE1 OE2 REMARK 480 LYS A 62 CB CG CD CE NZ REMARK 480 HIS A 63 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 66 CG CD CE NZ REMARK 480 VAL A 93 CB CG1 CG2 REMARK 480 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 119 CG CD CE NZ REMARK 480 GLU A 120 CG CD OE1 OE2 REMARK 480 GLU A 123 CG CD OE1 OE2 REMARK 480 GLU A 126 CG CD OE1 OE2 REMARK 480 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 142 CG CD1 CD2 REMARK 480 PHE A 146 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 480 PHE A 164 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU A 165 CG CD OE1 OE2 REMARK 480 GLU A 173 CG CD OE1 OE2 REMARK 480 LYS A 191 CG CD CE NZ REMARK 480 LYS A 202 CG CD CE NZ REMARK 480 MET A 213 CG SD CE REMARK 480 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 169 ND2 ASN A 169 6555 1.94 REMARK 500 CD2 HIS A -2 O ARG A 5 8556 2.02 REMARK 500 O VAL A 3 NH2 ARG A 73 8556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 161 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 -177.20 78.33 REMARK 500 SER A 32 -78.35 -75.33 REMARK 500 ALA A 33 23.20 -71.78 REMARK 500 ASP A 35 104.91 -58.95 REMARK 500 ASN A 37 126.85 177.73 REMARK 500 PRO A 82 130.77 -39.73 REMARK 500 THR A 92 4.85 -67.40 REMARK 500 ALA A 103 140.70 -34.60 REMARK 500 LEU A 113 -163.45 -111.93 REMARK 500 ALA A 115 -10.60 -48.79 REMARK 500 GLU A 127 6.63 -63.05 REMARK 500 ASP A 160 76.47 -44.89 REMARK 500 ASP A 162 4.05 -50.78 REMARK 500 THR A 163 92.36 -68.88 REMARK 500 GLU A 173 -70.58 -71.24 REMARK 500 PRO A 176 1.70 -66.15 REMARK 500 ASP A 180 13.25 -60.35 REMARK 500 SER A 188 98.11 56.73 REMARK 500 ILE A 190 79.63 71.56 REMARK 500 ARG A 194 -7.09 -54.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 5 13.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I4N RELATED DB: PDB REMARK 900 TM0140 IS IDENTICAL/SIMILAR TO PDB ENTRY 1I4N AT SEQUENCE IDENTITY REMARK 900 99% OVER RESIDUE 22-251 REMARK 900 RELATED ID: 282020 RELATED DB: TARGETDB DBREF 1J5T A 2 230 UNP Q56319 TRPC_THEMA 24 252 SEQADV 1J5T MET A -12 UNP Q56319 EXPRESSION TAG SEQADV 1J5T GLY A -11 UNP Q56319 EXPRESSION TAG SEQADV 1J5T SER A -10 UNP Q56319 EXPRESSION TAG SEQADV 1J5T ASP A -9 UNP Q56319 EXPRESSION TAG SEQADV 1J5T LYS A -8 UNP Q56319 EXPRESSION TAG SEQADV 1J5T ILE A -7 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -6 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -5 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -4 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -3 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -2 UNP Q56319 EXPRESSION TAG SEQADV 1J5T HIS A -1 UNP Q56319 EXPRESSION TAG SEQADV 1J5T MET A 1 UNP Q56319 EXPRESSION TAG SEQRES 1 A 242 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 242 ILE VAL GLN ARG ARG ASN HIS ARG PHE LEU GLU VAL LEU SEQRES 3 A 242 SER GLY LYS GLU ARG VAL LYS ILE ILE ALA GLU PHE LYS SEQRES 4 A 242 LYS ALA SER PRO SER ALA GLY ASP ILE ASN ALA ASP ALA SEQRES 5 A 242 SER LEU GLU ASP PHE ILE ARG MET TYR ASP GLU LEU ALA SEQRES 6 A 242 ASP ALA ILE SER ILE LEU THR GLU LYS HIS TYR PHE LYS SEQRES 7 A 242 GLY ASP PRO ALA PHE VAL ARG ALA ALA ARG ASN LEU THR SEQRES 8 A 242 CYS ARG PRO ILE LEU ALA LYS ASP PHE TYR ILE ASP THR SEQRES 9 A 242 VAL GLN VAL LYS LEU ALA SER SER VAL GLY ALA ASP ALA SEQRES 10 A 242 ILE LEU ILE ILE ALA ARG ILE LEU THR ALA GLU GLN ILE SEQRES 11 A 242 LYS GLU ILE TYR GLU ALA ALA GLU GLU LEU GLY MET ASP SEQRES 12 A 242 SER LEU VAL GLU VAL HIS SER ARG GLU ASP LEU GLU LYS SEQRES 13 A 242 VAL PHE SER VAL ILE ARG PRO LYS ILE ILE GLY ILE ASN SEQRES 14 A 242 THR ARG ASP LEU ASP THR PHE GLU ILE LYS LYS ASN VAL SEQRES 15 A 242 LEU TRP GLU LEU LEU PRO LEU VAL PRO ASP ASP THR VAL SEQRES 16 A 242 VAL VAL ALA GLU SER GLY ILE LYS ASP PRO ARG GLU LEU SEQRES 17 A 242 LYS ASP LEU ARG GLY LYS VAL ASN ALA VAL LEU VAL GLY SEQRES 18 A 242 THR SER ILE MET LYS ALA GLU ASN PRO ARG ARG PHE LEU SEQRES 19 A 242 GLU GLU MET ARG ALA TRP SER GLU HET CL A 501 1 HET CL A 502 1 HETNAM CL CHLORIDE ION FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *6(H2 O) HELIX 1 1 HIS A 8 LEU A 14 1 7 HELIX 2 2 SER A 41 ASP A 50 1 10 HELIX 3 3 ASP A 68 THR A 79 1 12 HELIX 4 4 ASP A 91 VAL A 101 1 11 HELIX 5 5 ARG A 111 LEU A 113 5 3 HELIX 6 6 THR A 114 GLU A 127 1 14 HELIX 7 7 SER A 138 ILE A 149 1 12 HELIX 8 8 THR A 163 LEU A 175 1 13 HELIX 9 9 PRO A 176 VAL A 178 5 3 HELIX 10 10 ASP A 192 ARG A 194 5 3 HELIX 11 11 GLU A 195 ARG A 200 1 6 HELIX 12 12 GLY A 209 LYS A 214 1 6 HELIX 13 13 ASN A 217 TRP A 228 1 12 SHEET 1 A 9 LYS A 21 PHE A 26 0 SHEET 2 A 9 ALA A 55 LEU A 59 1 O SER A 57 N ALA A 24 SHEET 3 A 9 ILE A 83 LYS A 86 1 O LYS A 86 N ILE A 58 SHEET 4 A 9 ALA A 105 ILE A 109 1 O ALA A 105 N ALA A 85 SHEET 5 A 9 ASP A 131 VAL A 136 1 O LEU A 133 N ILE A 106 SHEET 6 A 9 ILE A 153 ILE A 156 1 O GLY A 155 N VAL A 136 SHEET 7 A 9 VAL A 183 GLU A 187 1 O VAL A 185 N ILE A 154 SHEET 8 A 9 ALA A 205 VAL A 208 1 O LEU A 207 N ALA A 186 SHEET 9 A 9 LYS A 21 PHE A 26 1 N ILE A 23 O VAL A 206 SSBOND 1 CYS A 80 CYS A 80 1555 15556 2.75 SITE 1 AC1 4 GLN A 4 ARG A 73 ARG A 76 ASN A 77 SITE 1 AC2 3 ARG A 6 THR A 79 CYS A 80 CRYST1 117.597 117.597 82.153 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012172 0.00000