data_1J5Y # _entry.id 1J5Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J5Y pdb_00001j5y 10.2210/pdb1j5y/pdb RCSB RCSB001653 ? ? WWPDB D_1000001653 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-07-31 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-01-25 6 'Structure model' 1 5 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_related 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site 9 6 'Structure model' chem_comp_atom 10 6 'Structure model' chem_comp_bond 11 6 'Structure model' pdbx_entry_details 12 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.value' 21 5 'Structure model' '_struct_conn.pdbx_dist_value' 22 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 5 'Structure model' '_struct_ref_seq_dif.details' 36 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1J5Y _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2002-07-05 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 283459 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution.' _citation.journal_abbrev Proteins _citation.journal_volume 67 _citation.page_first 247 _citation.page_last 252 _citation.year 2007 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17256761 _citation.pdbx_database_id_DOI 10.1002/prot.21221 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weekes, D.' 1 ? primary 'Miller, M.D.' 2 ? primary 'Krishna, S.S.' 3 ? primary 'McMullan, D.' 4 ? primary 'McPhillips, T.M.' 5 ? primary 'Acosta, C.' 6 ? primary 'Canaves, J.M.' 7 ? primary 'Elsliger, M.A.' 8 ? primary 'Floyd, R.' 9 ? primary 'Grzechnik, S.K.' 10 ? primary 'Jaroszewski, L.' 11 ? primary 'Klock, H.E.' 12 ? primary 'Koesema, E.' 13 ? primary 'Kovarik, J.S.' 14 ? primary 'Kreusch, A.' 15 ? primary 'Morse, A.T.' 16 ? primary 'Quijano, K.' 17 ? primary 'Spraggon, G.' 18 ? primary 'van den Bedem, H.' 19 ? primary 'Wolf, G.' 20 ? primary 'Hodgson, K.O.' 21 ? primary 'Wooley, J.' 22 ? primary 'Deacon, A.M.' 23 ? primary 'Godzik, A.' 24 ? primary 'Lesley, S.A.' 25 ? primary 'Wilson, I.A.' 26 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY' 21373.705 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)H(MSE)KTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV ATPRGYVLAGGKSGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNL(MSE)E (MSE)AKTEPLLTLSGGVHLHTIEAPDEET(MSE)ERI(MSE)RELKKKGFLIEEG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMHMKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGK SGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGVHLH TIEAPDEETMERIMRELKKKGFLIEEG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 283459 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 HIS n 1 15 MSE n 1 16 LYS n 1 17 THR n 1 18 VAL n 1 19 ARG n 1 20 GLN n 1 21 GLU n 1 22 ARG n 1 23 LEU n 1 24 LYS n 1 25 SER n 1 26 ILE n 1 27 VAL n 1 28 ARG n 1 29 ILE n 1 30 LEU n 1 31 GLU n 1 32 ARG n 1 33 SER n 1 34 LYS n 1 35 GLU n 1 36 PRO n 1 37 VAL n 1 38 SER n 1 39 GLY n 1 40 ALA n 1 41 GLN n 1 42 LEU n 1 43 ALA n 1 44 GLU n 1 45 GLU n 1 46 LEU n 1 47 SER n 1 48 VAL n 1 49 SER n 1 50 ARG n 1 51 GLN n 1 52 VAL n 1 53 ILE n 1 54 VAL n 1 55 GLN n 1 56 ASP n 1 57 ILE n 1 58 ALA n 1 59 TYR n 1 60 LEU n 1 61 ARG n 1 62 SER n 1 63 LEU n 1 64 GLY n 1 65 TYR n 1 66 ASN n 1 67 ILE n 1 68 VAL n 1 69 ALA n 1 70 THR n 1 71 PRO n 1 72 ARG n 1 73 GLY n 1 74 TYR n 1 75 VAL n 1 76 LEU n 1 77 ALA n 1 78 GLY n 1 79 GLY n 1 80 LYS n 1 81 SER n 1 82 GLY n 1 83 VAL n 1 84 SER n 1 85 ARG n 1 86 LEU n 1 87 VAL n 1 88 ALA n 1 89 VAL n 1 90 LYS n 1 91 HIS n 1 92 ALA n 1 93 PRO n 1 94 GLU n 1 95 GLU n 1 96 ILE n 1 97 LYS n 1 98 GLU n 1 99 GLU n 1 100 LEU n 1 101 LEU n 1 102 CYS n 1 103 VAL n 1 104 VAL n 1 105 ARG n 1 106 ASN n 1 107 GLY n 1 108 GLY n 1 109 ARG n 1 110 ILE n 1 111 VAL n 1 112 ASP n 1 113 VAL n 1 114 ILE n 1 115 VAL n 1 116 GLU n 1 117 HIS n 1 118 PRO n 1 119 VAL n 1 120 TYR n 1 121 GLY n 1 122 GLU n 1 123 ILE n 1 124 ARG n 1 125 GLY n 1 126 ILE n 1 127 ILE n 1 128 ASP n 1 129 VAL n 1 130 SER n 1 131 SER n 1 132 GLU n 1 133 GLU n 1 134 GLU n 1 135 VAL n 1 136 LEU n 1 137 LYS n 1 138 PHE n 1 139 VAL n 1 140 ASN n 1 141 LEU n 1 142 MSE n 1 143 GLU n 1 144 MSE n 1 145 ALA n 1 146 LYS n 1 147 THR n 1 148 GLU n 1 149 PRO n 1 150 LEU n 1 151 LEU n 1 152 THR n 1 153 LEU n 1 154 SER n 1 155 GLY n 1 156 GLY n 1 157 VAL n 1 158 HIS n 1 159 LEU n 1 160 HIS n 1 161 THR n 1 162 ILE n 1 163 GLU n 1 164 ALA n 1 165 PRO n 1 166 ASP n 1 167 GLU n 1 168 GLU n 1 169 THR n 1 170 MSE n 1 171 GLU n 1 172 ARG n 1 173 ILE n 1 174 MSE n 1 175 ARG n 1 176 GLU n 1 177 LEU n 1 178 LYS n 1 179 LYS n 1 180 LYS n 1 181 GLY n 1 182 PHE n 1 183 LEU n 1 184 ILE n 1 185 GLU n 1 186 GLU n 1 187 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1602 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 ? ? ? A . n A 1 14 HIS 14 2 ? ? ? A . n A 1 15 MSE 15 3 3 MSE MSE A . n A 1 16 LYS 16 4 4 LYS LYS A . n A 1 17 THR 17 5 5 THR THR A . n A 1 18 VAL 18 6 6 VAL VAL A . n A 1 19 ARG 19 7 7 ARG ARG A . n A 1 20 GLN 20 8 8 GLN GLN A . n A 1 21 GLU 21 9 9 GLU GLU A . n A 1 22 ARG 22 10 10 ARG ARG A . n A 1 23 LEU 23 11 11 LEU LEU A . n A 1 24 LYS 24 12 12 LYS LYS A . n A 1 25 SER 25 13 13 SER SER A . n A 1 26 ILE 26 14 14 ILE ILE A . n A 1 27 VAL 27 15 15 VAL VAL A . n A 1 28 ARG 28 16 16 ARG ARG A . n A 1 29 ILE 29 17 17 ILE ILE A . n A 1 30 LEU 30 18 18 LEU LEU A . n A 1 31 GLU 31 19 19 GLU GLU A . n A 1 32 ARG 32 20 20 ARG ARG A . n A 1 33 SER 33 21 21 SER SER A . n A 1 34 LYS 34 22 22 LYS LYS A . n A 1 35 GLU 35 23 23 GLU GLU A . n A 1 36 PRO 36 24 24 PRO PRO A . n A 1 37 VAL 37 25 25 VAL VAL A . n A 1 38 SER 38 26 26 SER SER A . n A 1 39 GLY 39 27 27 GLY GLY A . n A 1 40 ALA 40 28 28 ALA ALA A . n A 1 41 GLN 41 29 29 GLN GLN A . n A 1 42 LEU 42 30 30 LEU LEU A . n A 1 43 ALA 43 31 31 ALA ALA A . n A 1 44 GLU 44 32 32 GLU GLU A . n A 1 45 GLU 45 33 33 GLU GLU A . n A 1 46 LEU 46 34 34 LEU LEU A . n A 1 47 SER 47 35 35 SER SER A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 SER 49 37 37 SER SER A . n A 1 50 ARG 50 38 38 ARG ARG A . n A 1 51 GLN 51 39 39 GLN GLN A . n A 1 52 VAL 52 40 40 VAL VAL A . n A 1 53 ILE 53 41 41 ILE ILE A . n A 1 54 VAL 54 42 42 VAL VAL A . n A 1 55 GLN 55 43 43 GLN GLN A . n A 1 56 ASP 56 44 44 ASP ASP A . n A 1 57 ILE 57 45 45 ILE ILE A . n A 1 58 ALA 58 46 46 ALA ALA A . n A 1 59 TYR 59 47 47 TYR TYR A . n A 1 60 LEU 60 48 48 LEU LEU A . n A 1 61 ARG 61 49 49 ARG ARG A . n A 1 62 SER 62 50 50 SER SER A . n A 1 63 LEU 63 51 51 LEU LEU A . n A 1 64 GLY 64 52 52 GLY GLY A . n A 1 65 TYR 65 53 53 TYR TYR A . n A 1 66 ASN 66 54 54 ASN ASN A . n A 1 67 ILE 67 55 55 ILE ILE A . n A 1 68 VAL 68 56 56 VAL VAL A . n A 1 69 ALA 69 57 57 ALA ALA A . n A 1 70 THR 70 58 58 THR THR A . n A 1 71 PRO 71 59 59 PRO PRO A . n A 1 72 ARG 72 60 60 ARG ARG A . n A 1 73 GLY 73 61 61 GLY GLY A . n A 1 74 TYR 74 62 62 TYR TYR A . n A 1 75 VAL 75 63 63 VAL VAL A . n A 1 76 LEU 76 64 64 LEU LEU A . n A 1 77 ALA 77 65 65 ALA ALA A . n A 1 78 GLY 78 66 66 GLY GLY A . n A 1 79 GLY 79 67 67 GLY GLY A . n A 1 80 LYS 80 68 68 LYS LYS A . n A 1 81 SER 81 69 69 SER SER A . n A 1 82 GLY 82 70 70 GLY GLY A . n A 1 83 VAL 83 71 71 VAL VAL A . n A 1 84 SER 84 72 72 SER SER A . n A 1 85 ARG 85 73 73 ARG ARG A . n A 1 86 LEU 86 74 74 LEU LEU A . n A 1 87 VAL 87 75 75 VAL VAL A . n A 1 88 ALA 88 76 76 ALA ALA A . n A 1 89 VAL 89 77 77 VAL VAL A . n A 1 90 LYS 90 78 78 LYS LYS A . n A 1 91 HIS 91 79 79 HIS HIS A . n A 1 92 ALA 92 80 80 ALA ALA A . n A 1 93 PRO 93 81 81 PRO PRO A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 GLU 95 83 83 GLU GLU A . n A 1 96 ILE 96 84 84 ILE ILE A . n A 1 97 LYS 97 85 85 LYS LYS A . n A 1 98 GLU 98 86 86 GLU GLU A . n A 1 99 GLU 99 87 87 GLU GLU A . n A 1 100 LEU 100 88 88 LEU LEU A . n A 1 101 LEU 101 89 89 LEU LEU A . n A 1 102 CYS 102 90 90 CYS CYS A . n A 1 103 VAL 103 91 91 VAL VAL A . n A 1 104 VAL 104 92 92 VAL VAL A . n A 1 105 ARG 105 93 93 ARG ARG A . n A 1 106 ASN 106 94 94 ASN ASN A . n A 1 107 GLY 107 95 95 GLY GLY A . n A 1 108 GLY 108 96 96 GLY GLY A . n A 1 109 ARG 109 97 97 ARG ARG A . n A 1 110 ILE 110 98 98 ILE ILE A . n A 1 111 VAL 111 99 99 VAL VAL A . n A 1 112 ASP 112 100 100 ASP ASP A . n A 1 113 VAL 113 101 101 VAL VAL A . n A 1 114 ILE 114 102 102 ILE ILE A . n A 1 115 VAL 115 103 103 VAL VAL A . n A 1 116 GLU 116 104 104 GLU GLU A . n A 1 117 HIS 117 105 105 HIS HIS A . n A 1 118 PRO 118 106 106 PRO PRO A . n A 1 119 VAL 119 107 107 VAL VAL A . n A 1 120 TYR 120 108 108 TYR TYR A . n A 1 121 GLY 121 109 109 GLY GLY A . n A 1 122 GLU 122 110 110 GLU GLU A . n A 1 123 ILE 123 111 111 ILE ILE A . n A 1 124 ARG 124 112 112 ARG ARG A . n A 1 125 GLY 125 113 113 GLY GLY A . n A 1 126 ILE 126 114 114 ILE ILE A . n A 1 127 ILE 127 115 115 ILE ILE A . n A 1 128 ASP 128 116 116 ASP ASP A . n A 1 129 VAL 129 117 117 VAL VAL A . n A 1 130 SER 130 118 118 SER SER A . n A 1 131 SER 131 119 119 SER SER A . n A 1 132 GLU 132 120 120 GLU GLU A . n A 1 133 GLU 133 121 121 GLU GLU A . n A 1 134 GLU 134 122 122 GLU GLU A . n A 1 135 VAL 135 123 123 VAL VAL A . n A 1 136 LEU 136 124 124 LEU LEU A . n A 1 137 LYS 137 125 125 LYS LYS A . n A 1 138 PHE 138 126 126 PHE PHE A . n A 1 139 VAL 139 127 127 VAL VAL A . n A 1 140 ASN 140 128 128 ASN ASN A . n A 1 141 LEU 141 129 129 LEU LEU A . n A 1 142 MSE 142 130 130 MSE MSE A . n A 1 143 GLU 143 131 131 GLU GLU A . n A 1 144 MSE 144 132 132 MSE MSE A . n A 1 145 ALA 145 133 133 ALA ALA A . n A 1 146 LYS 146 134 134 LYS LYS A . n A 1 147 THR 147 135 135 THR THR A . n A 1 148 GLU 148 136 136 GLU GLU A . n A 1 149 PRO 149 137 137 PRO PRO A . n A 1 150 LEU 150 138 138 LEU LEU A . n A 1 151 LEU 151 139 139 LEU LEU A . n A 1 152 THR 152 140 140 THR THR A . n A 1 153 LEU 153 141 141 LEU LEU A . n A 1 154 SER 154 142 142 SER SER A . n A 1 155 GLY 155 143 143 GLY GLY A . n A 1 156 GLY 156 144 144 GLY GLY A . n A 1 157 VAL 157 145 145 VAL VAL A . n A 1 158 HIS 158 146 146 HIS HIS A . n A 1 159 LEU 159 147 147 LEU LEU A . n A 1 160 HIS 160 148 148 HIS HIS A . n A 1 161 THR 161 149 149 THR THR A . n A 1 162 ILE 162 150 150 ILE ILE A . n A 1 163 GLU 163 151 151 GLU GLU A . n A 1 164 ALA 164 152 152 ALA ALA A . n A 1 165 PRO 165 153 153 PRO PRO A . n A 1 166 ASP 166 154 154 ASP ASP A . n A 1 167 GLU 167 155 155 GLU GLU A . n A 1 168 GLU 168 156 156 GLU GLU A . n A 1 169 THR 169 157 157 THR THR A . n A 1 170 MSE 170 158 158 MSE MSE A . n A 1 171 GLU 171 159 159 GLU GLU A . n A 1 172 ARG 172 160 160 ARG ARG A . n A 1 173 ILE 173 161 161 ILE ILE A . n A 1 174 MSE 174 162 162 MSE MSE A . n A 1 175 ARG 175 163 163 ARG ARG A . n A 1 176 GLU 176 164 164 GLU GLU A . n A 1 177 LEU 177 165 165 LEU LEU A . n A 1 178 LYS 178 166 166 LYS LYS A . n A 1 179 LYS 179 167 167 LYS LYS A . n A 1 180 LYS 180 168 168 LYS LYS A . n A 1 181 GLY 181 169 169 GLY GLY A . n A 1 182 PHE 182 170 170 PHE PHE A . n A 1 183 LEU 183 171 171 LEU LEU A . n A 1 184 ILE 184 172 172 ILE ILE A . n A 1 185 GLU 185 173 173 GLU GLU A . n A 1 186 GLU 186 174 174 GLU GLU A . n A 1 187 GLY 187 175 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 201 1 NI NI A . C 3 K 1 202 2 K K A . D 4 HOH 1 203 3 HOH HOH A . D 4 HOH 2 204 7 HOH HOH A . D 4 HOH 3 205 8 HOH HOH A . D 4 HOH 4 206 9 HOH HOH A . D 4 HOH 5 207 10 HOH HOH A . D 4 HOH 6 208 12 HOH HOH A . D 4 HOH 7 209 13 HOH HOH A . D 4 HOH 8 210 17 HOH HOH A . D 4 HOH 9 211 19 HOH HOH A . D 4 HOH 10 212 21 HOH HOH A . D 4 HOH 11 213 22 HOH HOH A . D 4 HOH 12 214 24 HOH HOH A . D 4 HOH 13 215 28 HOH HOH A . D 4 HOH 14 216 29 HOH HOH A . D 4 HOH 15 217 34 HOH HOH A . D 4 HOH 16 218 35 HOH HOH A . D 4 HOH 17 219 36 HOH HOH A . D 4 HOH 18 220 37 HOH HOH A . D 4 HOH 19 221 42 HOH HOH A . D 4 HOH 20 222 43 HOH HOH A . D 4 HOH 21 223 45 HOH HOH A . D 4 HOH 22 224 46 HOH HOH A . D 4 HOH 23 225 47 HOH HOH A . D 4 HOH 24 226 49 HOH HOH A . D 4 HOH 25 227 53 HOH HOH A . D 4 HOH 26 228 54 HOH HOH A . D 4 HOH 27 229 56 HOH HOH A . D 4 HOH 28 230 59 HOH HOH A . D 4 HOH 29 231 60 HOH HOH A . D 4 HOH 30 232 64 HOH HOH A . D 4 HOH 31 233 68 HOH HOH A . D 4 HOH 32 234 69 HOH HOH A . D 4 HOH 33 235 105 HOH HOH A . D 4 HOH 34 236 111 HOH HOH A . D 4 HOH 35 237 113 HOH HOH A . D 4 HOH 36 238 114 HOH HOH A . D 4 HOH 37 239 116 HOH HOH A . D 4 HOH 38 240 119 HOH HOH A . D 4 HOH 39 241 121 HOH HOH A . D 4 HOH 40 242 127 HOH HOH A . D 4 HOH 41 243 131 HOH HOH A . D 4 HOH 42 244 133 HOH HOH A . D 4 HOH 43 245 135 HOH HOH A . D 4 HOH 44 246 138 HOH HOH A . D 4 HOH 45 247 142 HOH HOH A . D 4 HOH 46 248 143 HOH HOH A . D 4 HOH 47 249 144 HOH HOH A . D 4 HOH 48 250 145 HOH HOH A . D 4 HOH 49 251 146 HOH HOH A . D 4 HOH 50 252 151 HOH HOH A . D 4 HOH 51 253 153 HOH HOH A . D 4 HOH 52 254 154 HOH HOH A . D 4 HOH 53 255 162 HOH HOH A . D 4 HOH 54 256 163 HOH HOH A . D 4 HOH 55 257 164 HOH HOH A . D 4 HOH 56 258 168 HOH HOH A . D 4 HOH 57 259 173 HOH HOH A . D 4 HOH 58 260 175 HOH HOH A . D 4 HOH 59 261 183 HOH HOH A . D 4 HOH 60 262 186 HOH HOH A . D 4 HOH 61 263 193 HOH HOH A . D 4 HOH 62 264 201 HOH HOH A . D 4 HOH 63 265 212 HOH HOH A . D 4 HOH 64 266 213 HOH HOH A . D 4 HOH 65 267 218 HOH HOH A . D 4 HOH 66 268 226 HOH HOH A . D 4 HOH 67 269 234 HOH HOH A . D 4 HOH 68 270 241 HOH HOH A . D 4 HOH 69 271 242 HOH HOH A . D 4 HOH 70 272 254 HOH HOH A . D 4 HOH 71 273 268 HOH HOH A . D 4 HOH 72 274 271 HOH HOH A . D 4 HOH 73 275 325 HOH HOH A . D 4 HOH 74 276 328 HOH HOH A . D 4 HOH 75 277 331 HOH HOH A . D 4 HOH 76 278 332 HOH HOH A . D 4 HOH 77 279 340 HOH HOH A . D 4 HOH 78 280 346 HOH HOH A . D 4 HOH 79 281 351 HOH HOH A . D 4 HOH 80 282 352 HOH HOH A . D 4 HOH 81 283 356 HOH HOH A . D 4 HOH 82 284 365 HOH HOH A . D 4 HOH 83 285 380 HOH HOH A . D 4 HOH 84 286 392 HOH HOH A . D 4 HOH 85 287 396 HOH HOH A . D 4 HOH 86 288 399 HOH HOH A . D 4 HOH 87 289 416 HOH HOH A . D 4 HOH 88 290 423 HOH HOH A . D 4 HOH 89 291 424 HOH HOH A . D 4 HOH 90 292 438 HOH HOH A . D 4 HOH 91 293 443 HOH HOH A . D 4 HOH 92 294 450 HOH HOH A . D 4 HOH 93 295 456 HOH HOH A . D 4 HOH 94 296 462 HOH HOH A . D 4 HOH 95 297 482 HOH HOH A . D 4 HOH 96 298 506 HOH HOH A . D 4 HOH 97 299 540 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 134 ? CG ? A LYS 146 CG 2 1 Y 0 A LYS 134 ? CD ? A LYS 146 CD 3 1 Y 0 A LYS 134 ? CE ? A LYS 146 CE 4 1 Y 0 A LYS 134 ? NZ ? A LYS 146 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 CCP4 'data reduction' . ? 3 SOLVE phasing . ? 4 RESOLVE 'model building' . ? 5 CNS refinement 1.0 ? 6 CCP4 'data scaling' '(SCALA)' ? 7 RESOLVE phasing . ? 8 # _cell.length_a 90.9566 _cell.length_b 90.9566 _cell.length_c 90.9566 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J5Y _cell.pdbx_unique_axis ? _cell.Z_PDB 12 # _symmetry.space_group_name_H-M 'P 2 3' _symmetry.entry_id 1J5Y _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 195 _symmetry.cell_setting ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1J5Y # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.2 _exptl_crystal.density_percent_sol 61.25 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details '0.8 M NaH2PO4/0.8 M KH2PO4, 0.1 M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K, pH 7.50' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2002-04-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.979105 1.0 3 0.979445 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.91162, 0.979105, 0.979445' # _reflns.entry_id 1J5Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.677 _reflns.d_resolution_high 2.300 _reflns.number_obs 11360 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.095 _reflns.pdbx_netI_over_sigmaI 18.6 _reflns.B_iso_Wilson_estimate 39.10 _reflns.pdbx_redundancy 9.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.324 _reflns_shell.meanI_over_sigI_obs 3.70000 _reflns_shell.pdbx_redundancy 3.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1J5Y _refine.ls_number_reflns_obs 11136 _refine.ls_number_reflns_all 11409 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.19 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 574 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.5 _refine.aniso_B[1][1] 0.00000 _refine.aniso_B[2][2] 0.00000 _refine.aniso_B[3][3] 0.00000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BULK SOLVENT CORRECTION' _refine.solvent_model_param_ksol 0.38 _refine.solvent_model_param_bsol 34.42 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;POOR ELECTRON DENSITY (BROKEN 2FO-FC DENSITY AT THE 1 SIGMA LEVEL AND SOME NEGATIVE FO-FC DENSITY AT THE 3 SIGMA LEVEL) INDICATE THAT THE SIDECHAINS OF THE FOLLOWING RESIDUES MAY BE MORE DISORDERED THAN INDICATED BY THEIR B-FACTORS: GLN-8, GLU-9, ARG-20, GLU-23, ARG-112, GLU- 136, GLU-156, AND GLU-173. NO ELECTRON DENSITY WAS OBSERVED FOR SIDECHAIN ATOMS BEYOND CB FOR LYS-134. THESE ATOMS WERE GIVEN AN OCCUPANCY OF ZERO. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'STANDARD CNS DICTIONARY/ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1J5Y _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 6.00 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1347 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1446 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.47 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.360 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.208 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.710 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.980 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.37 _refine_ls_shell.number_reflns_R_work 928 _refine_ls_shell.R_factor_R_work 0.2175 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2693 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1J5Y _struct.title 'Crystal structure of transcriptional regulator (TM1602) from Thermotoga maritima at 2.3 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;STRUCTURAL GENOMICS, TM1602, TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY, JCSG, CONSERVED HYPOTHETICAL PROTEIN, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, TRANSCRIPTION ; _struct_keywords.entry_id 1J5Y _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_code Q9X1T8_THEMA _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q9X1T8 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MHMKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGKSGVSRLVAVKHA PEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGVHLHTIEAPDEETMER IMRELKKKGFLIEEG ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J5Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 187 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X1T8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J5Y MSE A 1 ? UNP Q9X1T8 ? ? 'expression tag' -11 1 1 1J5Y GLY A 2 ? UNP Q9X1T8 ? ? 'expression tag' -10 2 1 1J5Y SER A 3 ? UNP Q9X1T8 ? ? 'expression tag' -9 3 1 1J5Y ASP A 4 ? UNP Q9X1T8 ? ? 'expression tag' -8 4 1 1J5Y LYS A 5 ? UNP Q9X1T8 ? ? 'expression tag' -7 5 1 1J5Y ILE A 6 ? UNP Q9X1T8 ? ? 'expression tag' -6 6 1 1J5Y HIS A 7 ? UNP Q9X1T8 ? ? 'expression tag' -5 7 1 1J5Y HIS A 8 ? UNP Q9X1T8 ? ? 'expression tag' -4 8 1 1J5Y HIS A 9 ? UNP Q9X1T8 ? ? 'expression tag' -3 9 1 1J5Y HIS A 10 ? UNP Q9X1T8 ? ? 'expression tag' -2 10 1 1J5Y HIS A 11 ? UNP Q9X1T8 ? ? 'expression tag' -1 11 1 1J5Y HIS A 12 ? UNP Q9X1T8 ? ? 'expression tag' 0 12 1 1J5Y MSE A 13 ? UNP Q9X1T8 MET 1 'modified residue' 1 13 1 1J5Y MSE A 15 ? UNP Q9X1T8 MET 3 'modified residue' 3 14 1 1J5Y MSE A 142 ? UNP Q9X1T8 MET 130 'modified residue' 130 15 1 1J5Y MSE A 144 ? UNP Q9X1T8 MET 132 'modified residue' 132 16 1 1J5Y MSE A 170 ? UNP Q9X1T8 MET 158 'modified residue' 158 17 1 1J5Y MSE A 174 ? UNP Q9X1T8 MET 162 'modified residue' 162 18 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 13050 ? 2 MORE -105 ? 2 'SSA (A^2)' 30020 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 90.9566000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 90.9566000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 15 ? SER A 33 ? MSE A 3 SER A 21 1 ? 19 HELX_P HELX_P2 2 SER A 38 ? SER A 47 ? SER A 26 SER A 35 1 ? 10 HELX_P HELX_P3 3 SER A 49 ? GLY A 64 ? SER A 37 GLY A 52 1 ? 16 HELX_P HELX_P4 4 ALA A 92 ? GLU A 94 ? ALA A 80 GLU A 82 5 ? 3 HELX_P HELX_P5 5 GLU A 95 ? ASN A 106 ? GLU A 83 ASN A 94 1 ? 12 HELX_P HELX_P6 6 SER A 131 ? ALA A 145 ? SER A 119 ALA A 133 1 ? 15 HELX_P HELX_P7 7 THR A 152 ? GLY A 155 ? THR A 140 GLY A 143 5 ? 4 HELX_P HELX_P8 8 ASP A 166 ? LYS A 180 ? ASP A 154 LYS A 168 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 15 C ? ? ? 1_555 A LYS 16 N ? ? A MSE 3 A LYS 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A LEU 141 C ? ? ? 1_555 A MSE 142 N ? ? A LEU 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A MSE 142 C ? ? ? 1_555 A GLU 143 N ? ? A MSE 130 A GLU 131 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A GLU 143 C ? ? ? 1_555 A MSE 144 N ? ? A GLU 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A MSE 144 C ? ? ? 1_555 A ALA 145 N ? ? A MSE 132 A ALA 133 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A THR 169 C ? ? ? 1_555 A MSE 170 N ? ? A THR 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A MSE 170 C ? ? ? 1_555 A GLU 171 N ? ? A MSE 158 A GLU 159 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ILE 173 C ? ? ? 1_555 A MSE 174 N ? ? A ILE 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale9 covale both ? A MSE 174 C ? ? ? 1_555 A ARG 175 N ? ? A MSE 162 A ARG 163 1_555 ? ? ? ? ? ? ? 1.321 ? ? metalc1 metalc ? ? A LEU 30 O ? ? ? 1_555 C K . K ? ? A LEU 18 A K 202 1_555 ? ? ? ? ? ? ? 2.904 ? ? metalc2 metalc ? ? A GLU 31 O ? ? ? 1_555 C K . K ? ? A GLU 19 A K 202 1_555 ? ? ? ? ? ? ? 3.176 ? ? metalc3 metalc ? ? A SER 33 O ? ? ? 1_555 C K . K ? ? A SER 21 A K 202 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc4 metalc ? ? A LEU 76 O ? ? ? 1_555 C K . K ? ? A LEU 64 A K 202 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc5 metalc ? ? A GLY 78 N ? ? ? 1_555 C K . K ? ? A GLY 66 A K 202 1_555 ? ? ? ? ? ? ? 3.295 ? ? metalc6 metalc ? ? A HIS 91 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 79 A NI 201 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc7 metalc ? ? A GLU 99 OE2 ? ? ? 1_555 B NI . NI ? ? A GLU 87 A NI 201 1_555 ? ? ? ? ? ? ? 2.532 ? ? metalc8 metalc ? ? A GLU 99 OE1 ? ? ? 1_555 B NI . NI ? ? A GLU 87 A NI 201 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc9 metalc ? ? A HIS 158 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 146 A NI 201 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc10 metalc ? ? A HIS 160 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 148 A NI 201 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc11 metalc ? ? B NI . NI ? ? ? 1_555 D HOH . O ? ? A NI 201 A HOH 241 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 D HOH . O ? ? A K 202 A HOH 223 1_555 ? ? ? ? ? ? ? 3.066 ? ? metalc13 metalc ? ? C K . K ? ? ? 1_555 D HOH . O ? ? A K 202 A HOH 255 1_555 ? ? ? ? ? ? ? 3.454 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A GLU 31 ? A GLU 19 ? 1_555 72.9 ? 2 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A SER 33 ? A SER 21 ? 1_555 81.7 ? 3 O ? A GLU 31 ? A GLU 19 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A SER 33 ? A SER 21 ? 1_555 88.8 ? 4 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A LEU 76 ? A LEU 64 ? 1_555 69.6 ? 5 O ? A GLU 31 ? A GLU 19 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A LEU 76 ? A LEU 64 ? 1_555 101.0 ? 6 O ? A SER 33 ? A SER 21 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? A LEU 76 ? A LEU 64 ? 1_555 145.0 ? 7 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 N ? A GLY 78 ? A GLY 66 ? 1_555 116.3 ? 8 O ? A GLU 31 ? A GLU 19 ? 1_555 K ? C K . ? A K 202 ? 1_555 N ? A GLY 78 ? A GLY 66 ? 1_555 74.7 ? 9 O ? A SER 33 ? A SER 21 ? 1_555 K ? C K . ? A K 202 ? 1_555 N ? A GLY 78 ? A GLY 66 ? 1_555 149.4 ? 10 O ? A LEU 76 ? A LEU 64 ? 1_555 K ? C K . ? A K 202 ? 1_555 N ? A GLY 78 ? A GLY 66 ? 1_555 64.9 ? 11 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 132.6 ? 12 O ? A GLU 31 ? A GLU 19 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 154.2 ? 13 O ? A SER 33 ? A SER 21 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 98.3 ? 14 O ? A LEU 76 ? A LEU 64 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 87.4 ? 15 N ? A GLY 78 ? A GLY 66 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 87.3 ? 16 O ? A LEU 30 ? A LEU 18 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 53.2 ? 17 O ? A GLU 31 ? A GLU 19 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 124.3 ? 18 O ? A SER 33 ? A SER 21 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 72.1 ? 19 O ? A LEU 76 ? A LEU 64 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 74.7 ? 20 N ? A GLY 78 ? A GLY 66 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 138.4 ? 21 O ? D HOH . ? A HOH 223 ? 1_555 K ? C K . ? A K 202 ? 1_555 O ? D HOH . ? A HOH 255 ? 1_555 81.4 ? 22 NE2 ? A HIS 91 ? A HIS 79 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 OE2 ? A GLU 99 ? A GLU 87 ? 1_555 82.0 ? 23 NE2 ? A HIS 91 ? A HIS 79 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 OE1 ? A GLU 99 ? A GLU 87 ? 1_555 86.7 ? 24 OE2 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 OE1 ? A GLU 99 ? A GLU 87 ? 1_555 55.1 ? 25 NE2 ? A HIS 91 ? A HIS 79 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 158 ? A HIS 146 ? 1_555 83.3 ? 26 OE2 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 158 ? A HIS 146 ? 1_555 107.8 ? 27 OE1 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 158 ? A HIS 146 ? 1_555 161.4 ? 28 NE2 ? A HIS 91 ? A HIS 79 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 160 ? A HIS 148 ? 1_555 171.6 ? 29 OE2 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 160 ? A HIS 148 ? 1_555 89.8 ? 30 OE1 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 160 ? A HIS 148 ? 1_555 90.0 ? 31 NE2 ? A HIS 158 ? A HIS 146 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 160 ? A HIS 148 ? 1_555 97.6 ? 32 NE2 ? A HIS 91 ? A HIS 79 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 241 ? 1_555 94.7 ? 33 OE2 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 241 ? 1_555 154.3 ? 34 OE1 ? A GLU 99 ? A GLU 87 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 241 ? 1_555 99.4 ? 35 NE2 ? A HIS 158 ? A HIS 146 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 241 ? 1_555 97.0 ? 36 NE2 ? A HIS 160 ? A HIS 148 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 241 ? 1_555 93.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 15 ? . . . . MSE A 3 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 142 ? . . . . MSE A 130 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 144 ? . . . . MSE A 132 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 170 ? . . . . MSE A 158 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 174 ? . . . . MSE A 162 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 68 ? THR A 70 ? VAL A 56 THR A 58 A 2 GLY A 73 ? VAL A 75 ? GLY A 61 VAL A 63 B 1 VAL A 83 ? LYS A 90 ? VAL A 71 LYS A 78 B 2 VAL A 157 ? ALA A 164 ? VAL A 145 ALA A 152 B 3 ARG A 109 ? HIS A 117 ? ARG A 97 HIS A 105 B 4 GLY A 121 ? VAL A 129 ? GLY A 109 VAL A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 68 ? N VAL A 56 O VAL A 75 ? O VAL A 63 B 1 2 N ARG A 85 ? N ARG A 73 O ILE A 162 ? O ILE A 150 B 2 3 O LEU A 159 ? O LEU A 147 N ILE A 114 ? N ILE A 102 B 3 4 N VAL A 113 ? N VAL A 101 O GLY A 125 ? O GLY A 113 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 201 ? 5 'BINDING SITE FOR RESIDUE NI A 201' AC2 Software A K 202 ? 6 'BINDING SITE FOR RESIDUE K A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 91 ? HIS A 79 . ? 1_555 ? 2 AC1 5 GLU A 99 ? GLU A 87 . ? 1_555 ? 3 AC1 5 HIS A 158 ? HIS A 146 . ? 1_555 ? 4 AC1 5 HIS A 160 ? HIS A 148 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 241 . ? 1_555 ? 6 AC2 6 LEU A 30 ? LEU A 18 . ? 1_555 ? 7 AC2 6 GLU A 31 ? GLU A 19 . ? 1_555 ? 8 AC2 6 SER A 33 ? SER A 21 . ? 1_555 ? 9 AC2 6 LEU A 76 ? LEU A 64 . ? 1_555 ? 10 AC2 6 GLY A 78 ? GLY A 66 . ? 1_555 ? 11 AC2 6 HOH D . ? HOH A 223 . ? 1_555 ? # _pdbx_entry_details.entry_id 1J5Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 15 A MSE 3 ? MET SELENOMETHIONINE 2 A MSE 142 A MSE 130 ? MET SELENOMETHIONINE 3 A MSE 144 A MSE 132 ? MET SELENOMETHIONINE 4 A MSE 170 A MSE 158 ? MET SELENOMETHIONINE 5 A MSE 174 A MSE 162 ? MET SELENOMETHIONINE # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN NI assigned based on electron density and coordination, potassium ion based on electron density and environment. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A MSE 1 ? A MSE 13 14 1 Y 1 A HIS 2 ? A HIS 14 15 1 Y 1 A GLY 175 ? A GLY 187 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 K K K N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 MSE N N N N 251 MSE CA C N S 252 MSE C C N N 253 MSE O O N N 254 MSE OXT O N N 255 MSE CB C N N 256 MSE CG C N N 257 MSE SE SE N N 258 MSE CE C N N 259 MSE H H N N 260 MSE H2 H N N 261 MSE HA H N N 262 MSE HXT H N N 263 MSE HB2 H N N 264 MSE HB3 H N N 265 MSE HG2 H N N 266 MSE HG3 H N N 267 MSE HE1 H N N 268 MSE HE2 H N N 269 MSE HE3 H N N 270 NI NI NI N N 271 PHE N N N N 272 PHE CA C N S 273 PHE C C N N 274 PHE O O N N 275 PHE CB C N N 276 PHE CG C Y N 277 PHE CD1 C Y N 278 PHE CD2 C Y N 279 PHE CE1 C Y N 280 PHE CE2 C Y N 281 PHE CZ C Y N 282 PHE OXT O N N 283 PHE H H N N 284 PHE H2 H N N 285 PHE HA H N N 286 PHE HB2 H N N 287 PHE HB3 H N N 288 PHE HD1 H N N 289 PHE HD2 H N N 290 PHE HE1 H N N 291 PHE HE2 H N N 292 PHE HZ H N N 293 PHE HXT H N N 294 PRO N N N N 295 PRO CA C N S 296 PRO C C N N 297 PRO O O N N 298 PRO CB C N N 299 PRO CG C N N 300 PRO CD C N N 301 PRO OXT O N N 302 PRO H H N N 303 PRO HA H N N 304 PRO HB2 H N N 305 PRO HB3 H N N 306 PRO HG2 H N N 307 PRO HG3 H N N 308 PRO HD2 H N N 309 PRO HD3 H N N 310 PRO HXT H N N 311 SER N N N N 312 SER CA C N S 313 SER C C N N 314 SER O O N N 315 SER CB C N N 316 SER OG O N N 317 SER OXT O N N 318 SER H H N N 319 SER H2 H N N 320 SER HA H N N 321 SER HB2 H N N 322 SER HB3 H N N 323 SER HG H N N 324 SER HXT H N N 325 THR N N N N 326 THR CA C N S 327 THR C C N N 328 THR O O N N 329 THR CB C N R 330 THR OG1 O N N 331 THR CG2 C N N 332 THR OXT O N N 333 THR H H N N 334 THR H2 H N N 335 THR HA H N N 336 THR HB H N N 337 THR HG1 H N N 338 THR HG21 H N N 339 THR HG22 H N N 340 THR HG23 H N N 341 THR HXT H N N 342 TYR N N N N 343 TYR CA C N S 344 TYR C C N N 345 TYR O O N N 346 TYR CB C N N 347 TYR CG C Y N 348 TYR CD1 C Y N 349 TYR CD2 C Y N 350 TYR CE1 C Y N 351 TYR CE2 C Y N 352 TYR CZ C Y N 353 TYR OH O N N 354 TYR OXT O N N 355 TYR H H N N 356 TYR H2 H N N 357 TYR HA H N N 358 TYR HB2 H N N 359 TYR HB3 H N N 360 TYR HD1 H N N 361 TYR HD2 H N N 362 TYR HE1 H N N 363 TYR HE2 H N N 364 TYR HH H N N 365 TYR HXT H N N 366 VAL N N N N 367 VAL CA C N S 368 VAL C C N N 369 VAL O O N N 370 VAL CB C N N 371 VAL CG1 C N N 372 VAL CG2 C N N 373 VAL OXT O N N 374 VAL H H N N 375 VAL H2 H N N 376 VAL HA H N N 377 VAL HB H N N 378 VAL HG11 H N N 379 VAL HG12 H N N 380 VAL HG13 H N N 381 VAL HG21 H N N 382 VAL HG22 H N N 383 VAL HG23 H N N 384 VAL HXT H N N 385 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MSE N CA sing N N 237 MSE N H sing N N 238 MSE N H2 sing N N 239 MSE CA C sing N N 240 MSE CA CB sing N N 241 MSE CA HA sing N N 242 MSE C O doub N N 243 MSE C OXT sing N N 244 MSE OXT HXT sing N N 245 MSE CB CG sing N N 246 MSE CB HB2 sing N N 247 MSE CB HB3 sing N N 248 MSE CG SE sing N N 249 MSE CG HG2 sing N N 250 MSE CG HG3 sing N N 251 MSE SE CE sing N N 252 MSE CE HE1 sing N N 253 MSE CE HE2 sing N N 254 MSE CE HE3 sing N N 255 PHE N CA sing N N 256 PHE N H sing N N 257 PHE N H2 sing N N 258 PHE CA C sing N N 259 PHE CA CB sing N N 260 PHE CA HA sing N N 261 PHE C O doub N N 262 PHE C OXT sing N N 263 PHE CB CG sing N N 264 PHE CB HB2 sing N N 265 PHE CB HB3 sing N N 266 PHE CG CD1 doub Y N 267 PHE CG CD2 sing Y N 268 PHE CD1 CE1 sing Y N 269 PHE CD1 HD1 sing N N 270 PHE CD2 CE2 doub Y N 271 PHE CD2 HD2 sing N N 272 PHE CE1 CZ doub Y N 273 PHE CE1 HE1 sing N N 274 PHE CE2 CZ sing Y N 275 PHE CE2 HE2 sing N N 276 PHE CZ HZ sing N N 277 PHE OXT HXT sing N N 278 PRO N CA sing N N 279 PRO N CD sing N N 280 PRO N H sing N N 281 PRO CA C sing N N 282 PRO CA CB sing N N 283 PRO CA HA sing N N 284 PRO C O doub N N 285 PRO C OXT sing N N 286 PRO CB CG sing N N 287 PRO CB HB2 sing N N 288 PRO CB HB3 sing N N 289 PRO CG CD sing N N 290 PRO CG HG2 sing N N 291 PRO CG HG3 sing N N 292 PRO CD HD2 sing N N 293 PRO CD HD3 sing N N 294 PRO OXT HXT sing N N 295 SER N CA sing N N 296 SER N H sing N N 297 SER N H2 sing N N 298 SER CA C sing N N 299 SER CA CB sing N N 300 SER CA HA sing N N 301 SER C O doub N N 302 SER C OXT sing N N 303 SER CB OG sing N N 304 SER CB HB2 sing N N 305 SER CB HB3 sing N N 306 SER OG HG sing N N 307 SER OXT HXT sing N N 308 THR N CA sing N N 309 THR N H sing N N 310 THR N H2 sing N N 311 THR CA C sing N N 312 THR CA CB sing N N 313 THR CA HA sing N N 314 THR C O doub N N 315 THR C OXT sing N N 316 THR CB OG1 sing N N 317 THR CB CG2 sing N N 318 THR CB HB sing N N 319 THR OG1 HG1 sing N N 320 THR CG2 HG21 sing N N 321 THR CG2 HG22 sing N N 322 THR CG2 HG23 sing N N 323 THR OXT HXT sing N N 324 TYR N CA sing N N 325 TYR N H sing N N 326 TYR N H2 sing N N 327 TYR CA C sing N N 328 TYR CA CB sing N N 329 TYR CA HA sing N N 330 TYR C O doub N N 331 TYR C OXT sing N N 332 TYR CB CG sing N N 333 TYR CB HB2 sing N N 334 TYR CB HB3 sing N N 335 TYR CG CD1 doub Y N 336 TYR CG CD2 sing Y N 337 TYR CD1 CE1 sing Y N 338 TYR CD1 HD1 sing N N 339 TYR CD2 CE2 doub Y N 340 TYR CD2 HD2 sing N N 341 TYR CE1 CZ doub Y N 342 TYR CE1 HE1 sing N N 343 TYR CE2 CZ sing Y N 344 TYR CE2 HE2 sing N N 345 TYR CZ OH sing N N 346 TYR OH HH sing N N 347 TYR OXT HXT sing N N 348 VAL N CA sing N N 349 VAL N H sing N N 350 VAL N H2 sing N N 351 VAL CA C sing N N 352 VAL CA CB sing N N 353 VAL CA HA sing N N 354 VAL C O doub N N 355 VAL C OXT sing N N 356 VAL CB CG1 sing N N 357 VAL CB CG2 sing N N 358 VAL CB HB sing N N 359 VAL CG1 HG11 sing N N 360 VAL CG1 HG12 sing N N 361 VAL CG1 HG13 sing N N 362 VAL CG2 HG21 sing N N 363 VAL CG2 HG22 sing N N 364 VAL CG2 HG23 sing N N 365 VAL OXT HXT sing N N 366 # _atom_sites.entry_id 1J5Y _atom_sites.fract_transf_matrix[1][1] 0.010994 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010994 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010994 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N NI O S SE # loop_