HEADER SIGNALING PROTEIN 14-MAY-01 1J6X TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOINDUCER-2 PRODUCTION PROTEIN LUXS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AI-2 SYNTHESIS PROTEIN, CONSERVED HYPOTHETICAL PROTEIN COMPND 5 JHP0097; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA FOLD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.A.LEWIS,E.B.FURLONG,M.G.BERGSEID,W.E.SANDERSON,S.G.BUCHANAN REVDAT 4 04-OCT-17 1J6X 1 REMARK REVDAT 3 24-FEB-09 1J6X 1 VERSN REVDAT 2 30-AUG-05 1J6X 1 JRNL REVDAT 1 08-JUN-01 1J6X 0 JRNL AUTH H.A.LEWIS,E.B.FURLONG,B.LAUBERT,G.A.EROSHKINA,Y.BATIYENKO, JRNL AUTH 2 J.M.ADAMS,M.G.BERGSEID,C.D.MARSH,T.S.PEAT,W.E.SANDERSON, JRNL AUTH 3 J.M.SAUDER,S.G.BUCHANAN JRNL TITL A STRUCTURAL GENOMICS APPROACH TO THE STUDY OF QUORUM JRNL TITL 2 SENSING: CRYSTAL STRUCTURES OF THREE LUXS ORTHOLOGS. JRNL REF STRUCTURE V. 9 527 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11435117 JRNL DOI 10.1016/S0969-2126(01)00613-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BADGER,J.M.SAUDER,J.M.ADAMS,S.ANTONYSAMY,K.BAIN, REMARK 1 AUTH 2 M.G.BERGSEID,S.G.BUCHANAN,M.D.BUCHANAN,Y.BATIYENKO, REMARK 1 AUTH 3 J.A.CHRISTOPHER,S.EMTAGE,A.EROSHKINA,I.FEIL,E.B.FURLONG, REMARK 1 AUTH 4 K.S.GAJIWALA,X.GAO,D.HE,J.HENDLE,A.HUBER,K.HODA,P.KEARINS, REMARK 1 AUTH 5 C.KISSINGER,B.LAUBERT,H.A.LEWIS,J.LIN,K.LOOMIS,D.LORIMER, REMARK 1 AUTH 6 G.LOUIE,M.MALETIC,C.D.MARSH,I.MILLER,J.MOLINARI, REMARK 1 AUTH 7 H.J.MULLER-DIECKMANN,J.M.NEWMAN,B.W.NOLAND,B.PAGARIGAN, REMARK 1 AUTH 8 F.PARK,T.S.PEAT,K.W.POST,S.RADOJICIC,A.RAMOS,R.ROMERO, REMARK 1 AUTH 9 M.E.RUTTER,W.E.SANDERSON,K.D.SCHWINN,J.TRESSER,J.WINHOVEN, REMARK 1 AUTH10 T.A.WRIGHT,L.WU,J.XU,T.J.HARRIS REMARK 1 TITL STRUCTURAL ANALYSIS OF A SET OF PROTEINS RESULTING FROM A REMARK 1 TITL 2 BACTERIAL GENOMICS PROJECT REMARK 1 REF PROTEINS V. 60 787 2005 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 16021622 REMARK 1 DOI 10.1002/PROT.20541 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9641 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, AMMONIUM SULFATE, MES, BME, REMARK 280 NACL, PH 5.75, VAPOR DIFFUSION, HANGING DROP AT 293K, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.07000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.57000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.53500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.57000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.60500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.53500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.60500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 3 CA MSE A 3 CB -0.515 REMARK 500 MSE A 3 CG MSE A 3 SE -0.631 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 3 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 MSE A 3 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 MSE A 3 CG - SE - CE ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 17.99 -151.94 REMARK 500 SER A 117 54.35 -90.49 REMARK 500 THR A 129 112.70 -167.17 REMARK 500 ASP B 24 146.12 -171.33 REMARK 500 ARG B 66 3.35 -68.74 REMARK 500 GLN B 81 18.62 57.76 REMARK 500 ASP B 92 40.41 -148.03 REMARK 500 SER B 117 64.82 -101.17 REMARK 500 TRP B 124 64.72 -155.69 REMARK 500 THR B 129 116.13 -167.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 122 SG REMARK 620 2 HIS A 59 NE2 108.6 REMARK 620 3 HIS A 55 NE2 102.2 104.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 CYS B 122 SG 117.3 REMARK 620 3 HOH B 504 O 95.2 124.6 REMARK 620 4 HIS B 55 NE2 93.7 102.0 120.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 601 DBREF 1J6X A 1 152 UNP Q9ZMW8 LUXS_HELPJ 1 152 DBREF 1J6X B 1 152 UNP Q9ZMW8 LUXS_HELPJ 1 152 SEQADV 1J6X MSE A 1 UNP Q9ZMW8 MET 1 CLONING ARTIFACT SEQADV 1J6X MSE A 3 UNP Q9ZMW8 MET 3 CLONING ARTIFACT SEQADV 1J6X MSE A 49 UNP Q9ZMW8 MET 49 CLONING ARTIFACT SEQADV 1J6X MSE A 51 UNP Q9ZMW8 MET 51 CLONING ARTIFACT SEQADV 1J6X MSE A 78 UNP Q9ZMW8 MET 78 CLONING ARTIFACT SEQADV 1J6X MSE A 105 UNP Q9ZMW8 MET 105 CLONING ARTIFACT SEQADV 1J6X GLY A 153 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X SER A 154 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 155 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 156 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 157 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 158 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 159 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS A 160 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X MSE B 1 UNP Q9ZMW8 MET 1 CLONING ARTIFACT SEQADV 1J6X MSE B 3 UNP Q9ZMW8 MET 3 CLONING ARTIFACT SEQADV 1J6X MSE B 49 UNP Q9ZMW8 MET 49 CLONING ARTIFACT SEQADV 1J6X MSE B 51 UNP Q9ZMW8 MET 51 CLONING ARTIFACT SEQADV 1J6X MSE B 78 UNP Q9ZMW8 MET 78 CLONING ARTIFACT SEQADV 1J6X MSE B 105 UNP Q9ZMW8 MET 105 CLONING ARTIFACT SEQADV 1J6X GLY B 153 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X SER B 154 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 155 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 156 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 157 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 158 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 159 UNP Q9ZMW8 EXPRESSION TAG SEQADV 1J6X HIS B 160 UNP Q9ZMW8 EXPRESSION TAG SEQRES 1 A 160 MSE LYS MSE ASN VAL GLU SER PHE ASN LEU ASP HIS THR SEQRES 2 A 160 LYS VAL LYS ALA PRO TYR VAL ARG ILE ALA ASP ARG LYS SEQRES 3 A 160 LYS GLY VAL ASN GLY ASP LEU ILE VAL LYS TYR ASP VAL SEQRES 4 A 160 ARG PHE LYS GLN PRO ASN ARG ASP HIS MSE ASP MSE PRO SEQRES 5 A 160 SER LEU HIS SER LEU GLU HIS LEU VAL ALA GLU ILE ILE SEQRES 6 A 160 ARG ASN HIS ALA ASN TYR VAL VAL ASP TRP SER PRO MSE SEQRES 7 A 160 GLY CYS GLN THR GLY PHE TYR LEU THR VAL LEU ASN HIS SEQRES 8 A 160 ASP ASN TYR THR GLU ILE LEU GLU VAL LEU GLU LYS THR SEQRES 9 A 160 MSE GLN ASP VAL LEU LYS ALA LYS GLU VAL PRO ALA SER SEQRES 10 A 160 ASN GLU LYS GLN CYS GLY TRP ALA ALA ASN HIS THR LEU SEQRES 11 A 160 GLU GLY ALA GLN ASN LEU ALA ARG ALA PHE LEU ASP LYS SEQRES 12 A 160 ARG ALA GLU TRP SER GLU VAL GLY VAL GLY SER HIS HIS SEQRES 13 A 160 HIS HIS HIS HIS SEQRES 1 B 160 MSE LYS MSE ASN VAL GLU SER PHE ASN LEU ASP HIS THR SEQRES 2 B 160 LYS VAL LYS ALA PRO TYR VAL ARG ILE ALA ASP ARG LYS SEQRES 3 B 160 LYS GLY VAL ASN GLY ASP LEU ILE VAL LYS TYR ASP VAL SEQRES 4 B 160 ARG PHE LYS GLN PRO ASN ARG ASP HIS MSE ASP MSE PRO SEQRES 5 B 160 SER LEU HIS SER LEU GLU HIS LEU VAL ALA GLU ILE ILE SEQRES 6 B 160 ARG ASN HIS ALA ASN TYR VAL VAL ASP TRP SER PRO MSE SEQRES 7 B 160 GLY CYS GLN THR GLY PHE TYR LEU THR VAL LEU ASN HIS SEQRES 8 B 160 ASP ASN TYR THR GLU ILE LEU GLU VAL LEU GLU LYS THR SEQRES 9 B 160 MSE GLN ASP VAL LEU LYS ALA LYS GLU VAL PRO ALA SER SEQRES 10 B 160 ASN GLU LYS GLN CYS GLY TRP ALA ALA ASN HIS THR LEU SEQRES 11 B 160 GLU GLY ALA GLN ASN LEU ALA ARG ALA PHE LEU ASP LYS SEQRES 12 B 160 ARG ALA GLU TRP SER GLU VAL GLY VAL GLY SER HIS HIS SEQRES 13 B 160 HIS HIS HIS HIS MODRES 1J6X MSE A 1 MET SELENOMETHIONINE MODRES 1J6X MSE A 3 MET SELENOMETHIONINE MODRES 1J6X MSE A 49 MET SELENOMETHIONINE MODRES 1J6X MSE A 51 MET SELENOMETHIONINE MODRES 1J6X MSE A 78 MET SELENOMETHIONINE MODRES 1J6X MSE A 105 MET SELENOMETHIONINE MODRES 1J6X MSE B 1 MET SELENOMETHIONINE MODRES 1J6X MSE B 3 MET SELENOMETHIONINE MODRES 1J6X MSE B 49 MET SELENOMETHIONINE MODRES 1J6X MSE B 51 MET SELENOMETHIONINE MODRES 1J6X MSE B 78 MET SELENOMETHIONINE MODRES 1J6X MSE B 105 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 3 8 HET MSE A 49 8 HET MSE A 51 8 HET MSE A 78 8 HET MSE A 105 8 HET MSE B 1 8 HET MSE B 3 8 HET MSE B 49 8 HET MSE B 51 8 HET MSE B 78 8 HET MSE B 105 8 HET ZN A 161 1 HET MET A 601 9 HET ZN B 161 1 HET MET B 501 9 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM MET METHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MET 2(C5 H11 N O2 S) FORMUL 7 HOH *21(H2 O) HELIX 1 1 VAL A 5 LEU A 10 5 6 HELIX 2 2 ASP A 50 ALA A 69 1 20 HELIX 3 3 ASN A 93 LEU A 109 1 17 HELIX 4 4 THR A 129 LYS A 143 1 15 HELIX 5 5 ARG A 144 TRP A 147 5 4 HELIX 6 6 VAL B 5 LEU B 10 5 6 HELIX 7 7 ASP B 50 ALA B 69 1 20 HELIX 8 8 ASN B 93 LYS B 110 1 18 HELIX 9 9 THR B 129 LYS B 143 1 15 HELIX 10 10 ARG B 144 TRP B 147 5 4 SHEET 1 A 4 TYR A 19 LYS A 27 0 SHEET 2 A 4 LEU A 33 ARG A 40 -1 O ILE A 34 N LYS A 26 SHEET 3 A 4 GLY A 83 LEU A 89 -1 N PHE A 84 O VAL A 39 SHEET 4 A 4 VAL A 72 PRO A 77 -1 N VAL A 73 O THR A 87 SHEET 1 B 4 TYR B 19 LYS B 27 0 SHEET 2 B 4 LEU B 33 ARG B 40 -1 N ILE B 34 O LYS B 26 SHEET 3 B 4 GLY B 83 LEU B 89 -1 O PHE B 84 N VAL B 39 SHEET 4 B 4 VAL B 72 PRO B 77 -1 N VAL B 73 O THR B 87 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LYS A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N ASN A 4 1555 1555 1.33 LINK C HIS A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N ASP A 50 1555 1555 1.33 LINK C ASP A 50 N MSE A 51 1555 1555 1.32 LINK C MSE A 51 N PRO A 52 1555 1555 1.34 LINK C PRO A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N GLY A 79 1555 1555 1.33 LINK C THR A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLN A 106 1555 1555 1.33 LINK ZN ZN A 161 SG CYS A 122 1555 1555 2.44 LINK ZN ZN A 161 NE2 HIS A 59 1555 1555 2.23 LINK ZN ZN A 161 NE2 HIS A 55 1555 1555 2.08 LINK C MSE B 1 N LYS B 2 1555 1555 1.32 LINK C LYS B 2 N MSE B 3 1555 1555 1.32 LINK C MSE B 3 N ASN B 4 1555 1555 1.32 LINK C HIS B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N ASP B 50 1555 1555 1.34 LINK C ASP B 50 N MSE B 51 1555 1555 1.33 LINK C MSE B 51 N PRO B 52 1555 1555 1.35 LINK C PRO B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N GLY B 79 1555 1555 1.32 LINK C THR B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N GLN B 106 1555 1555 1.33 LINK ZN ZN B 161 NE2 HIS B 59 1555 1555 2.12 LINK ZN ZN B 161 SG CYS B 122 1555 1555 2.53 LINK ZN ZN B 161 O HOH B 504 1555 1555 2.33 LINK ZN ZN B 161 NE2 HIS B 55 1555 1555 2.21 CISPEP 1 ALA A 17 PRO A 18 0 -0.66 CISPEP 2 ALA B 17 PRO B 18 0 0.49 SITE 1 AC1 3 HIS A 55 HIS A 59 CYS A 122 SITE 1 AC2 4 HIS B 55 HIS B 59 CYS B 122 HOH B 504 SITE 1 AC3 8 VAL A 5 SER A 7 ARG B 66 ASP B 74 SITE 2 AC3 8 TRP B 75 SER B 76 HOH B 502 HOH B 504 SITE 1 AC4 6 ARG A 66 ASP A 74 TRP A 75 SER A 76 SITE 2 AC4 6 VAL B 5 PHE B 8 CRYST1 71.140 71.140 130.140 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007684 0.00000 HETATM 1 N MSE A 1 -4.416 4.013 13.809 1.00 71.89 N HETATM 2 CA MSE A 1 -5.730 3.655 14.419 1.00 71.91 C HETATM 3 C MSE A 1 -6.889 4.068 13.514 1.00 69.33 C HETATM 4 O MSE A 1 -6.949 5.209 13.061 1.00 69.03 O HETATM 5 CB MSE A 1 -5.891 4.334 15.781 1.00 75.33 C HETATM 6 CG MSE A 1 -7.269 4.116 16.390 1.00 81.31 C HETATM 7 SE MSE A 1 -7.699 5.214 17.937 1.00 90.81 SE HETATM 8 CE MSE A 1 -7.881 3.804 19.269 1.00 86.93 C