data_1J7T # _entry.id 1J7T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J7T pdb_00001j7t 10.2210/pdb1j7t/pdb NDB DR0006 ? ? RCSB RCSB013467 ? ? WWPDB D_1000013467 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J7T _pdbx_database_status.recvd_initial_deposition_date 2001-05-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vicens, Q.' 1 'Westhof, E.' 2 # _citation.id primary _citation.title 'Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site.' _citation.journal_abbrev Structure _citation.journal_volume 9 _citation.page_first 647 _citation.page_last 658 _citation.year 2001 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11587639 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(01)00629-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vicens, Q.' 1 ? primary 'Westhof, E.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7048.259 2 ? ? ? 'Escherichia coli 16S rRNA A site' 2 non-polymer syn PAROMOMYCIN 615.628 2 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 PAROMOMYCIN PAR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 C n 1 9 A n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 U n 1 15 G n 1 16 A n 1 17 A n 1 18 G n 1 19 U n 1 20 C n 1 21 G n 1 22 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 PAR non-polymer . PAROMOMYCIN 'PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN; MONOMYCIN A; NEOMYCIN E' 'C23 H45 N5 O14' 615.628 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 ? ? ? A . n A 1 2 G 2 2 1 G G A . n A 1 3 C 3 3 2 C C A . n A 1 4 G 4 4 3 G G A . n A 1 5 U 5 5 4 U U A . n A 1 6 C 6 6 5 C C A . n A 1 7 A 7 7 6 A A A . n A 1 8 C 8 8 7 C C A . n A 1 9 A 9 9 8 A A A . n A 1 10 C 10 10 9 C C A . n A 1 11 C 11 11 10 C C A . n A 1 12 G 12 12 11 G G A . n A 1 13 G 13 13 12 G G A . n A 1 14 U 14 14 13 U U A . n A 1 15 G 15 15 14 G G A . n A 1 16 A 16 16 15 A A A . n A 1 17 A 17 17 16 A A A . n A 1 18 G 18 18 17 G G A . n A 1 19 U 19 19 18 U U A . n A 1 20 C 20 20 19 C C A . n A 1 21 G 21 21 20 G G A . n A 1 22 C 22 22 21 C C A . n B 1 1 C 1 23 ? ? ? B . n B 1 2 G 2 24 22 G G B . n B 1 3 C 3 25 23 C C B . n B 1 4 G 4 26 24 G G B . n B 1 5 U 5 27 25 U U B . n B 1 6 C 6 28 26 C C B . n B 1 7 A 7 29 27 A A B . n B 1 8 C 8 30 28 C C B . n B 1 9 A 9 31 29 A A B . n B 1 10 C 10 32 30 C C B . n B 1 11 C 11 33 31 C C B . n B 1 12 G 12 34 32 G G B . n B 1 13 G 13 35 33 G G B . n B 1 14 U 14 36 34 U U B . n B 1 15 G 15 37 35 G G B . n B 1 16 A 16 38 36 A A B . n B 1 17 A 17 39 37 A A B . n B 1 18 G 18 40 38 G G B . n B 1 19 U 19 41 39 U U B . n B 1 20 C 20 42 40 C C B . n B 1 21 G 21 43 41 G G B . n B 1 22 C 22 44 42 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PAR 1 45 43 PAR PAR A . D 2 PAR 1 46 44 PAR PAR B . E 3 HOH 1 101 101 HOH HOH A . E 3 HOH 2 105 105 HOH HOH A . E 3 HOH 3 106 106 HOH HOH A . E 3 HOH 4 107 107 HOH HOH A . E 3 HOH 5 108 108 HOH HOH A . E 3 HOH 6 109 109 HOH HOH A . E 3 HOH 7 111 111 HOH HOH A . E 3 HOH 8 113 113 HOH HOH A . E 3 HOH 9 116 116 HOH HOH A . E 3 HOH 10 117 117 HOH HOH A . E 3 HOH 11 118 118 HOH HOH A . E 3 HOH 12 119 119 HOH HOH A . E 3 HOH 13 122 122 HOH HOH A . E 3 HOH 14 124 124 HOH HOH A . E 3 HOH 15 135 135 HOH HOH A . E 3 HOH 16 136 136 HOH HOH A . E 3 HOH 17 140 140 HOH HOH A . E 3 HOH 18 142 142 HOH HOH A . E 3 HOH 19 143 143 HOH HOH A . E 3 HOH 20 145 145 HOH HOH A . E 3 HOH 21 150 150 HOH HOH A . E 3 HOH 22 151 151 HOH HOH A . F 3 HOH 1 102 102 HOH HOH B . F 3 HOH 2 103 103 HOH HOH B . F 3 HOH 3 104 104 HOH HOH B . F 3 HOH 4 110 110 HOH HOH B . F 3 HOH 5 112 112 HOH HOH B . F 3 HOH 6 114 114 HOH HOH B . F 3 HOH 7 115 115 HOH HOH B . F 3 HOH 8 120 120 HOH HOH B . F 3 HOH 9 121 121 HOH HOH B . F 3 HOH 10 123 123 HOH HOH B . F 3 HOH 11 125 125 HOH HOH B . F 3 HOH 12 126 126 HOH HOH B . F 3 HOH 13 127 127 HOH HOH B . F 3 HOH 14 128 128 HOH HOH B . F 3 HOH 15 129 129 HOH HOH B . F 3 HOH 16 130 130 HOH HOH B . F 3 HOH 17 131 131 HOH HOH B . F 3 HOH 18 132 132 HOH HOH B . F 3 HOH 19 133 133 HOH HOH B . F 3 HOH 20 134 134 HOH HOH B . F 3 HOH 21 137 137 HOH HOH B . F 3 HOH 22 138 138 HOH HOH B . F 3 HOH 23 139 139 HOH HOH B . F 3 HOH 24 141 141 HOH HOH B . F 3 HOH 25 144 144 HOH HOH B . F 3 HOH 26 146 146 HOH HOH B . F 3 HOH 27 147 147 HOH HOH B . F 3 HOH 28 148 148 HOH HOH B . F 3 HOH 29 149 149 HOH HOH B . F 3 HOH 30 152 152 HOH HOH B . F 3 HOH 31 153 153 HOH HOH B . F 3 HOH 32 154 154 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 1.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1J7T _cell.length_a 33.000 _cell.length_b 45.900 _cell.length_c 95.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J7T _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1J7T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details 'MPD, NaCl, MgSO4, glycerol, Na cacodylate, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MgSO4 ? ? ? 1 4 1 glycerol ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-09-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond (111), Ge(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 1J7T _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 5144 _reflns.number_all 5144 _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0550000 _reflns.pdbx_netI_over_sigmaI 24.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.7 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2300000 _reflns_shell.meanI_over_sigI_obs 6.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1J7T _refine.ls_number_reflns_obs 4772 _refine.ls_number_reflns_all 5278 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.5 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 15 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 90.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2060000 _refine.ls_R_factor_R_free 0.2470000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 395 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 52.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ;Model containing the 16S rRNA A site as solved in the crystallographic structure of the 30S ribosomal particle complexed to paromomycin ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values ;G. Parkinson, J. Vojtechovsky, L. Clowney, A.T. Brunger, H.M. Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996) ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 898 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1036 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011222 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.64474 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 10.12787 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.57160 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1J7T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1J7T _struct.title 'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J7T _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA-aminoglycoside interactions, A site, UoU pairs, AA bulges, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1J7T _struct_ref.pdbx_db_accession 1J7T _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1J7T A 1 ? 22 ? 1J7T 1 ? 22 ? 1 22 2 1 1J7T B 1 ? 22 ? 1J7T 23 ? 44 ? 23 44 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 21 N1 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 21 O6 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 21 N2 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 B U 19 N3 ? ? A U 5 B U 41 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 14 N3 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 14 O4 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 19 N3 ? ? ? 1_555 B U 5 O4 ? ? A U 19 B U 27 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 21 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 21 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PAR 45 ? 12 'BINDING SITE FOR RESIDUE PAR A 45' AC2 Software B PAR 46 ? 14 'BINDING SITE FOR RESIDUE PAR B 46' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 U A 14 ? U A 14 . ? 1_555 ? 2 AC1 12 G A 15 ? G A 15 . ? 1_555 ? 3 AC1 12 A A 16 ? A A 16 . ? 1_555 ? 4 AC1 12 A A 17 ? A A 17 . ? 1_555 ? 5 AC1 12 G A 18 ? G A 18 . ? 1_555 ? 6 AC1 12 U A 19 ? U A 19 . ? 1_555 ? 7 AC1 12 G B 4 ? G B 26 . ? 1_555 ? 8 AC1 12 U B 5 ? U B 27 . ? 1_555 ? 9 AC1 12 C B 6 ? C B 28 . ? 1_555 ? 10 AC1 12 A B 7 ? A B 29 . ? 1_555 ? 11 AC1 12 C B 8 ? C B 30 . ? 1_555 ? 12 AC1 12 HOH F . ? HOH B 154 . ? 1_555 ? 13 AC2 14 G A 4 ? G A 4 . ? 1_555 ? 14 AC2 14 U A 5 ? U A 5 . ? 1_555 ? 15 AC2 14 C A 6 ? C A 6 . ? 1_555 ? 16 AC2 14 A A 7 ? A A 7 . ? 1_555 ? 17 AC2 14 HOH E . ? HOH A 108 . ? 1_555 ? 18 AC2 14 HOH E . ? HOH A 113 . ? 1_555 ? 19 AC2 14 U B 14 ? U B 36 . ? 1_555 ? 20 AC2 14 G B 15 ? G B 37 . ? 1_555 ? 21 AC2 14 A B 16 ? A B 38 . ? 1_555 ? 22 AC2 14 A B 17 ? A B 39 . ? 1_555 ? 23 AC2 14 G B 18 ? G B 40 . ? 1_555 ? 24 AC2 14 U B 19 ? U B 41 . ? 1_555 ? 25 AC2 14 HOH F . ? HOH B 120 . ? 1_555 ? 26 AC2 14 HOH F . ? HOH B 132 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 38 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 38 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 38 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.57 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.13 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 5 ? ? 0.065 'SIDE CHAIN' 2 1 U B 36 ? ? 0.071 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 1 ? A C 1 2 1 Y 1 B C 23 ? B C 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 PAR C11 C N S 114 PAR O11 O N N 115 PAR C21 C N R 116 PAR N21 N N N 117 PAR C31 C N R 118 PAR O31 O N N 119 PAR C41 C N S 120 PAR O41 O N N 121 PAR C51 C N R 122 PAR O51 O N N 123 PAR C61 C N N 124 PAR O61 O N N 125 PAR C12 C N R 126 PAR N12 N N N 127 PAR C22 C N N 128 PAR C32 C N S 129 PAR N32 N N N 130 PAR C42 C N R 131 PAR C52 C N R 132 PAR O52 O N N 133 PAR C62 C N S 134 PAR O62 O N N 135 PAR C13 C N S 136 PAR C23 C N R 137 PAR O23 O N N 138 PAR C33 C N S 139 PAR O33 O N N 140 PAR C43 C N R 141 PAR O43 O N N 142 PAR C53 C N N 143 PAR O53 O N N 144 PAR C14 C N R 145 PAR C24 C N R 146 PAR N24 N N N 147 PAR C34 C N R 148 PAR O34 O N N 149 PAR C44 C N S 150 PAR O44 O N N 151 PAR C54 C N S 152 PAR O54 O N N 153 PAR C64 C N N 154 PAR N64 N N N 155 PAR H11 H N N 156 PAR H21 H N N 157 PAR HN21 H N N 158 PAR HN22 H N N 159 PAR H31 H N N 160 PAR HO31 H N N 161 PAR H41 H N N 162 PAR HO41 H N N 163 PAR H51 H N N 164 PAR H611 H N N 165 PAR H612 H N N 166 PAR HO61 H N N 167 PAR H12 H N N 168 PAR H121 H N N 169 PAR H122 H N N 170 PAR H221 H N N 171 PAR H222 H N N 172 PAR H32 H N N 173 PAR H321 H N N 174 PAR H322 H N N 175 PAR H42 H N N 176 PAR H52 H N N 177 PAR H62 H N N 178 PAR HO62 H N N 179 PAR H13 H N N 180 PAR H23 H N N 181 PAR HO23 H N N 182 PAR H33 H N N 183 PAR H43 H N N 184 PAR H531 H N N 185 PAR H532 H N N 186 PAR HO53 H N N 187 PAR H14 H N N 188 PAR H24 H N N 189 PAR H241 H N N 190 PAR H242 H N N 191 PAR H34 H N N 192 PAR HO34 H N N 193 PAR H44 H N N 194 PAR HO44 H N N 195 PAR H54 H N N 196 PAR H641 H N N 197 PAR H642 H N N 198 PAR HN61 H N N 199 PAR HN62 H N N 200 U OP3 O N N 201 U P P N N 202 U OP1 O N N 203 U OP2 O N N 204 U "O5'" O N N 205 U "C5'" C N N 206 U "C4'" C N R 207 U "O4'" O N N 208 U "C3'" C N S 209 U "O3'" O N N 210 U "C2'" C N R 211 U "O2'" O N N 212 U "C1'" C N R 213 U N1 N N N 214 U C2 C N N 215 U O2 O N N 216 U N3 N N N 217 U C4 C N N 218 U O4 O N N 219 U C5 C N N 220 U C6 C N N 221 U HOP3 H N N 222 U HOP2 H N N 223 U "H5'" H N N 224 U "H5''" H N N 225 U "H4'" H N N 226 U "H3'" H N N 227 U "HO3'" H N N 228 U "H2'" H N N 229 U "HO2'" H N N 230 U "H1'" H N N 231 U H3 H N N 232 U H5 H N N 233 U H6 H N N 234 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PAR C11 O11 sing N N 118 PAR C11 C21 sing N N 119 PAR C11 O51 sing N N 120 PAR C11 H11 sing N N 121 PAR O11 C42 sing N N 122 PAR C21 N21 sing N N 123 PAR C21 C31 sing N N 124 PAR C21 H21 sing N N 125 PAR N21 HN21 sing N N 126 PAR N21 HN22 sing N N 127 PAR C31 O31 sing N N 128 PAR C31 C41 sing N N 129 PAR C31 H31 sing N N 130 PAR O31 HO31 sing N N 131 PAR C41 O41 sing N N 132 PAR C41 C51 sing N N 133 PAR C41 H41 sing N N 134 PAR O41 HO41 sing N N 135 PAR C51 O51 sing N N 136 PAR C51 C61 sing N N 137 PAR C51 H51 sing N N 138 PAR C61 O61 sing N N 139 PAR C61 H611 sing N N 140 PAR C61 H612 sing N N 141 PAR O61 HO61 sing N N 142 PAR C12 N12 sing N N 143 PAR C12 C22 sing N N 144 PAR C12 C62 sing N N 145 PAR C12 H12 sing N N 146 PAR N12 H121 sing N N 147 PAR N12 H122 sing N N 148 PAR C22 C32 sing N N 149 PAR C22 H221 sing N N 150 PAR C22 H222 sing N N 151 PAR C32 N32 sing N N 152 PAR C32 C42 sing N N 153 PAR C32 H32 sing N N 154 PAR N32 H321 sing N N 155 PAR N32 H322 sing N N 156 PAR C42 C52 sing N N 157 PAR C42 H42 sing N N 158 PAR C52 O52 sing N N 159 PAR C52 C62 sing N N 160 PAR C52 H52 sing N N 161 PAR O52 C13 sing N N 162 PAR C62 O62 sing N N 163 PAR C62 H62 sing N N 164 PAR O62 HO62 sing N N 165 PAR C13 C23 sing N N 166 PAR C13 O43 sing N N 167 PAR C13 H13 sing N N 168 PAR C23 O23 sing N N 169 PAR C23 C33 sing N N 170 PAR C23 H23 sing N N 171 PAR O23 HO23 sing N N 172 PAR C33 O33 sing N N 173 PAR C33 C43 sing N N 174 PAR C33 H33 sing N N 175 PAR O33 C14 sing N N 176 PAR C43 O43 sing N N 177 PAR C43 C53 sing N N 178 PAR C43 H43 sing N N 179 PAR C53 O53 sing N N 180 PAR C53 H531 sing N N 181 PAR C53 H532 sing N N 182 PAR O53 HO53 sing N N 183 PAR C14 C24 sing N N 184 PAR C14 O54 sing N N 185 PAR C14 H14 sing N N 186 PAR C24 N24 sing N N 187 PAR C24 C34 sing N N 188 PAR C24 H24 sing N N 189 PAR N24 H241 sing N N 190 PAR N24 H242 sing N N 191 PAR C34 O34 sing N N 192 PAR C34 C44 sing N N 193 PAR C34 H34 sing N N 194 PAR O34 HO34 sing N N 195 PAR C44 O44 sing N N 196 PAR C44 C54 sing N N 197 PAR C44 H44 sing N N 198 PAR O44 HO44 sing N N 199 PAR C54 O54 sing N N 200 PAR C54 C64 sing N N 201 PAR C54 H54 sing N N 202 PAR C64 N64 sing N N 203 PAR C64 H641 sing N N 204 PAR C64 H642 sing N N 205 PAR N64 HN61 sing N N 206 PAR N64 HN62 sing N N 207 U OP3 P sing N N 208 U OP3 HOP3 sing N N 209 U P OP1 doub N N 210 U P OP2 sing N N 211 U P "O5'" sing N N 212 U OP2 HOP2 sing N N 213 U "O5'" "C5'" sing N N 214 U "C5'" "C4'" sing N N 215 U "C5'" "H5'" sing N N 216 U "C5'" "H5''" sing N N 217 U "C4'" "O4'" sing N N 218 U "C4'" "C3'" sing N N 219 U "C4'" "H4'" sing N N 220 U "O4'" "C1'" sing N N 221 U "C3'" "O3'" sing N N 222 U "C3'" "C2'" sing N N 223 U "C3'" "H3'" sing N N 224 U "O3'" "HO3'" sing N N 225 U "C2'" "O2'" sing N N 226 U "C2'" "C1'" sing N N 227 U "C2'" "H2'" sing N N 228 U "O2'" "HO2'" sing N N 229 U "C1'" N1 sing N N 230 U "C1'" "H1'" sing N N 231 U N1 C2 sing N N 232 U N1 C6 sing N N 233 U C2 O2 doub N N 234 U C2 N3 sing N N 235 U N3 C4 sing N N 236 U N3 H3 sing N N 237 U C4 O4 doub N N 238 U C4 C5 sing N N 239 U C5 C6 doub N N 240 U C5 H5 sing N N 241 U C6 H6 sing N N 242 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1J7T 'double helix' 1J7T 'a-form double helix' 1J7T 'mismatched base pair' 1J7T 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 22 1_555 -0.588 0.057 -0.336 -1.748 1.038 6.585 1 A_G2:C44_B A 2 ? B 44 ? 19 1 1 A C 3 1_555 B G 21 1_555 0.151 -0.215 0.395 -0.581 -0.222 -0.885 2 A_C3:G43_B A 3 ? B 43 ? 19 1 1 A G 4 1_555 B C 20 1_555 0.404 -0.031 -0.119 -1.749 -4.453 8.874 3 A_G4:C42_B A 4 ? B 42 ? 19 1 1 A U 5 1_555 B U 19 1_555 -2.091 -1.282 -0.274 -0.660 -4.899 -22.862 4 A_U5:U41_B A 5 ? B 41 ? ? ? 1 A C 6 1_555 B G 18 1_555 0.537 -0.505 -0.409 3.071 -4.755 5.745 5 A_C6:G40_B A 6 ? B 40 ? 19 1 1 A C 8 1_555 B G 15 1_555 0.262 -0.091 0.551 1.071 -20.942 0.600 6 A_C8:G37_B A 8 ? B 37 ? 19 1 1 A A 9 1_555 B U 14 1_555 -0.096 -0.213 0.066 -1.594 -16.721 0.425 7 A_A9:U36_B A 9 ? B 36 ? 20 1 1 A C 10 1_555 B G 13 1_555 0.164 -0.219 0.248 8.054 -17.354 0.839 8 A_C10:G35_B A 10 ? B 35 ? 19 1 1 A C 11 1_555 B G 12 1_555 -0.104 -0.301 0.100 -0.053 -9.867 -5.015 9 A_C11:G34_B A 11 ? B 34 ? 19 1 1 A G 12 1_555 B C 11 1_555 -0.061 -0.325 0.225 0.970 -11.209 -1.110 10 A_G12:C33_B A 12 ? B 33 ? 19 1 1 A G 13 1_555 B C 10 1_555 -0.598 -0.460 0.014 -2.635 -20.316 0.107 11 A_G13:C32_B A 13 ? B 32 ? 19 1 1 A U 14 1_555 B A 9 1_555 0.040 -0.238 0.159 -0.457 -18.813 -0.024 12 A_U14:A31_B A 14 ? B 31 ? 20 1 1 A G 15 1_555 B C 8 1_555 -0.287 -0.383 -0.305 -12.064 -23.876 2.079 13 A_G15:C30_B A 15 ? B 30 ? 19 1 1 A G 18 1_555 B C 6 1_555 -0.044 -0.362 0.434 1.175 -4.897 -1.031 14 A_G18:C28_B A 18 ? B 28 ? 19 1 1 A U 19 1_555 B U 5 1_555 1.538 -1.151 -0.151 -2.476 -5.115 -26.574 15 A_U19:U27_B A 19 ? B 27 ? ? ? 1 A C 20 1_555 B G 4 1_555 0.606 -0.429 0.751 -7.638 -6.225 -4.437 16 A_C20:G26_B A 20 ? B 26 ? 19 1 1 A G 21 1_555 B C 3 1_555 -0.027 -0.117 0.144 -8.868 -2.324 0.222 17 A_G21:C25_B A 21 ? B 25 ? 19 1 1 A C 22 1_555 B G 2 1_555 -0.076 0.095 -0.360 8.755 5.121 6.068 18 A_C22:G24_B A 22 ? B 24 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 22 1_555 A C 3 1_555 B G 21 1_555 -0.831 -1.925 3.327 -8.278 1.246 32.197 -3.582 0.015 3.357 2.200 14.619 33.240 1 AA_G2C3:G43C44_BB A 2 ? B 44 ? A 3 ? B 43 ? 1 A C 3 1_555 B G 21 1_555 A G 4 1_555 B C 20 1_555 -0.019 -1.883 3.093 4.371 8.560 32.280 -4.475 0.657 2.503 14.985 -7.653 33.644 2 AA_C3G4:C42G43_BB A 3 ? B 43 ? A 4 ? B 42 ? 1 A G 4 1_555 B C 20 1_555 A U 5 1_555 B U 19 1_555 -1.376 -1.980 3.220 -3.009 3.779 21.104 -6.718 2.513 2.988 10.147 8.080 21.644 3 AA_G4U5:U41C42_BB A 4 ? B 42 ? A 5 ? B 41 ? 1 A U 5 1_555 B U 19 1_555 A C 6 1_555 B G 18 1_555 1.976 -2.538 3.357 2.216 -1.946 44.679 -3.145 -2.381 3.548 -2.556 -2.911 44.771 4 AA_U5C6:G40U41_BB A 5 ? B 41 ? A 6 ? B 40 ? 1 A C 8 1_555 B G 15 1_555 A A 9 1_555 B U 14 1_555 -0.073 -1.707 3.086 2.598 10.927 30.607 -4.678 0.518 2.341 19.879 -4.726 32.556 5 AA_C8A9:U36G37_BB A 8 ? B 37 ? A 9 ? B 36 ? 1 A A 9 1_555 B U 14 1_555 A C 10 1_555 B G 13 1_555 0.548 -1.637 3.018 -1.326 0.638 29.842 -3.295 -1.315 2.957 1.237 2.572 29.878 6 AA_A9C10:G35U36_BB A 9 ? B 36 ? A 10 ? B 35 ? 1 A C 10 1_555 B G 13 1_555 A C 11 1_555 B G 12 1_555 -0.613 -1.933 3.314 -0.924 6.586 34.969 -4.087 0.874 2.928 10.839 1.520 35.577 7 AA_C10C11:G34G35_BB A 10 ? B 35 ? A 11 ? B 34 ? 1 A C 11 1_555 B G 12 1_555 A G 12 1_555 B C 11 1_555 -0.379 -1.824 3.143 -1.980 8.292 27.274 -5.368 0.370 2.511 17.064 4.076 28.551 8 AA_C11G12:C33G34_BB A 11 ? B 34 ? A 12 ? B 33 ? 1 A G 12 1_555 B C 11 1_555 A G 13 1_555 B C 10 1_555 0.041 -1.591 3.372 1.148 7.834 30.402 -4.371 0.134 2.882 14.629 -2.144 31.392 9 AA_G12G13:C32C33_BB A 12 ? B 33 ? A 13 ? B 32 ? 1 A G 13 1_555 B C 10 1_555 A U 14 1_555 B A 9 1_555 0.404 -1.124 3.146 -1.131 5.229 34.216 -2.641 -0.842 2.933 8.821 1.907 34.619 10 AA_G13U14:A31C32_BB A 13 ? B 32 ? A 14 ? B 31 ? 1 A U 14 1_555 B A 9 1_555 A G 15 1_555 B C 8 1_555 0.038 -1.467 3.507 4.102 11.406 31.478 -4.390 0.602 2.804 20.114 -7.233 33.676 11 AA_U14G15:C30A31_BB A 14 ? B 31 ? A 15 ? B 30 ? 1 A G 15 1_555 B C 8 1_555 A G 18 1_555 B C 6 1_555 -1.054 -3.782 6.187 7.166 16.520 80.039 -3.640 1.131 5.370 12.699 -5.509 81.706 12 AA_G15G18:C28C30_BB A 15 ? B 30 ? A 18 ? B 28 ? 1 A G 18 1_555 B C 6 1_555 A U 19 1_555 B U 5 1_555 -1.900 -2.739 3.298 3.024 1.451 37.185 -4.465 3.356 3.035 2.270 -4.730 37.331 13 AA_G18U19:U27C28_BB A 18 ? B 28 ? A 19 ? B 27 ? 1 A U 19 1_555 B U 5 1_555 A C 20 1_555 B G 4 1_555 1.107 -2.284 3.219 -4.389 4.931 31.487 -4.925 -2.713 2.665 8.962 7.979 32.155 14 AA_U19C20:G26U27_BB A 19 ? B 27 ? A 20 ? B 26 ? 1 A C 20 1_555 B G 4 1_555 A G 21 1_555 B C 3 1_555 -0.013 -2.187 3.041 2.547 3.936 24.846 -6.004 0.681 2.653 9.044 -5.853 25.277 15 AA_C20G21:C25G26_BB A 20 ? B 26 ? A 21 ? B 25 ? 1 A G 21 1_555 B C 3 1_555 A C 22 1_555 B G 2 1_555 0.880 -2.413 2.923 6.966 -1.160 29.250 -4.427 -0.355 3.135 -2.256 -13.546 30.073 16 AA_G21C22:G24C25_BB A 21 ? B 25 ? A 22 ? B 24 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details ;Model containing the 16S rRNA A site as solved in the crystallographic structure of the 30S ribosomal particle complexed to paromomycin ; # _atom_sites.entry_id 1J7T _atom_sites.fract_transf_matrix[1][1] 0.030303 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] -0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021786 _atom_sites.fract_transf_matrix[2][3] -0.000001 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010493 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_