HEADER PROTEIN BINDING 22-MAY-01 1J8K TITLE NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRA DOMAIN 2 (RESIDUES 1631-1724); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS EDA, FIBRONECTIN, TYPEIII DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NIIMI,M.OSAWA,N.YAMAJI,K.YASUNAGA,H.SAKASHITA,T.MASE,A.TANAKA, AUTHOR 2 S.FUJITA REVDAT 4 23-FEB-22 1J8K 1 REMARK REVDAT 3 24-FEB-09 1J8K 1 VERSN REVDAT 2 25-DEC-02 1J8K 1 REMARK REVDAT 1 06-FEB-02 1J8K 0 JRNL AUTH T.NIIMI,M.OSAWA,N.YAMAJI,K.YASUNAGA,H.SAKASHITA,T.MASE, JRNL AUTH 2 A.TANAKA,S.FUJITA JRNL TITL NMR STRUCTURE OF HUMAN FIBRONECTIN EDA. JRNL REF J.BIOMOL.NMR V. 21 281 2001 JRNL REFN ISSN 0925-2738 JRNL PMID 11775745 JRNL DOI 10.1023/A:1012947209393 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1998, X-PLOR 3.1 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THESE STRUCTURES CONSIST OF 1289 UPPER REMARK 3 LIMITS ON DISTANCES OBTAINED FROM NOE MEASUREMENTS AND HTDROGEN REMARK 3 EXCHANGE MEASUREMENTS AND 51 TORSION ANGLE CONSTRAINTS OBTAINED REMARK 3 FROM COUPLING CONSTANT AND CHEMICAL SHIFT INDEX REMARK 4 REMARK 4 1J8K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 400MM SODIUM SULFATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM EDA U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER, 400MM SODIUM REMARK 210 SULFATE; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THREE-DIMENSIONAL STRUCTURE IN SOLUTION REPRESENTED BY 20 REMARK 210 CONFORMERS DETERMINED BY NUCLEAR MAGNETIC RESONANCE, TORSION REMARK 210 ANGLE DYNAMICS AND RESTRAINED ENERGY REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 76 H ASP A 78 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 134.99 61.76 REMARK 500 1 PRO A 5 -169.16 -79.77 REMARK 500 1 LYS A 6 -74.96 -132.40 REMARK 500 1 THR A 11 -73.67 -99.40 REMARK 500 1 SER A 17 118.44 167.10 REMARK 500 1 PRO A 25 38.21 -82.83 REMARK 500 1 GLN A 26 27.75 36.44 REMARK 500 1 GLN A 28 92.40 41.24 REMARK 500 1 GLU A 40 -68.55 171.89 REMARK 500 1 ALA A 49 102.12 -41.94 REMARK 500 1 ASP A 51 -34.75 -130.22 REMARK 500 1 LEU A 62 -126.97 -106.19 REMARK 500 1 ARG A 63 -55.21 172.53 REMARK 500 1 HIS A 76 89.62 -177.49 REMARK 500 1 ASP A 77 -58.20 64.63 REMARK 500 1 ASP A 78 66.11 -174.46 REMARK 500 1 THR A 90 105.56 -59.95 REMARK 500 1 ALA A 91 102.29 -44.29 REMARK 500 2 ARG A 4 96.03 2.21 REMARK 500 2 SER A 17 108.82 176.74 REMARK 500 2 PRO A 25 -163.91 -73.89 REMARK 500 2 GLN A 28 105.05 54.35 REMARK 500 2 PRO A 39 36.06 -85.00 REMARK 500 2 GLU A 40 -72.59 -151.89 REMARK 500 2 PRO A 50 -164.07 -74.01 REMARK 500 2 GLU A 53 -32.00 -146.06 REMARK 500 2 SER A 66 135.71 -170.45 REMARK 500 2 HIS A 76 -155.17 -151.39 REMARK 500 2 ASP A 78 63.50 176.49 REMARK 500 2 MET A 79 -169.79 -125.95 REMARK 500 2 GLU A 80 61.26 -152.22 REMARK 500 2 GLN A 88 139.89 179.67 REMARK 500 2 ALA A 91 179.60 -52.36 REMARK 500 3 ARG A 4 119.36 63.40 REMARK 500 3 PRO A 5 -160.06 -72.51 REMARK 500 3 LYS A 6 144.66 -177.40 REMARK 500 3 THR A 11 -77.06 -96.47 REMARK 500 3 SER A 17 115.71 -172.54 REMARK 500 3 SER A 24 161.29 -42.63 REMARK 500 3 GLU A 40 -60.83 -164.12 REMARK 500 3 PRO A 50 -165.75 -74.17 REMARK 500 3 LEU A 62 -162.20 -114.32 REMARK 500 3 GLU A 67 85.84 -56.97 REMARK 500 3 HIS A 76 101.45 -177.73 REMARK 500 3 ASP A 77 -74.14 62.32 REMARK 500 3 ASP A 78 58.09 -158.74 REMARK 500 3 ALA A 91 -161.12 -61.47 REMARK 500 4 ILE A 2 -177.68 44.60 REMARK 500 4 ARG A 4 112.53 60.77 REMARK 500 4 LYS A 6 -59.43 -128.87 REMARK 500 REMARK 500 THIS ENTRY HAS 316 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 4 0.27 SIDE CHAIN REMARK 500 1 ARG A 31 0.17 SIDE CHAIN REMARK 500 1 ARG A 33 0.32 SIDE CHAIN REMARK 500 1 ARG A 63 0.25 SIDE CHAIN REMARK 500 2 ARG A 4 0.30 SIDE CHAIN REMARK 500 2 ARG A 31 0.28 SIDE CHAIN REMARK 500 2 ARG A 33 0.31 SIDE CHAIN REMARK 500 2 ARG A 63 0.32 SIDE CHAIN REMARK 500 3 ARG A 4 0.10 SIDE CHAIN REMARK 500 3 ARG A 31 0.26 SIDE CHAIN REMARK 500 3 ARG A 33 0.32 SIDE CHAIN REMARK 500 3 ARG A 63 0.10 SIDE CHAIN REMARK 500 4 ARG A 4 0.29 SIDE CHAIN REMARK 500 4 ARG A 31 0.25 SIDE CHAIN REMARK 500 4 ARG A 33 0.11 SIDE CHAIN REMARK 500 4 ARG A 63 0.24 SIDE CHAIN REMARK 500 5 ARG A 4 0.32 SIDE CHAIN REMARK 500 5 ARG A 31 0.30 SIDE CHAIN REMARK 500 5 ARG A 33 0.31 SIDE CHAIN REMARK 500 5 ARG A 63 0.17 SIDE CHAIN REMARK 500 6 ARG A 4 0.30 SIDE CHAIN REMARK 500 6 ARG A 31 0.29 SIDE CHAIN REMARK 500 6 ARG A 33 0.23 SIDE CHAIN REMARK 500 6 ARG A 63 0.24 SIDE CHAIN REMARK 500 7 ARG A 4 0.32 SIDE CHAIN REMARK 500 7 ARG A 31 0.19 SIDE CHAIN REMARK 500 7 ARG A 33 0.28 SIDE CHAIN REMARK 500 7 ARG A 63 0.24 SIDE CHAIN REMARK 500 8 ARG A 4 0.29 SIDE CHAIN REMARK 500 8 ARG A 31 0.30 SIDE CHAIN REMARK 500 8 ARG A 33 0.30 SIDE CHAIN REMARK 500 8 ARG A 63 0.31 SIDE CHAIN REMARK 500 9 ARG A 4 0.29 SIDE CHAIN REMARK 500 9 ARG A 31 0.22 SIDE CHAIN REMARK 500 9 ARG A 33 0.32 SIDE CHAIN REMARK 500 9 ARG A 63 0.31 SIDE CHAIN REMARK 500 10 ARG A 4 0.30 SIDE CHAIN REMARK 500 10 ARG A 31 0.29 SIDE CHAIN REMARK 500 10 ARG A 33 0.32 SIDE CHAIN REMARK 500 10 ARG A 63 0.32 SIDE CHAIN REMARK 500 11 ARG A 4 0.18 SIDE CHAIN REMARK 500 11 ARG A 31 0.27 SIDE CHAIN REMARK 500 11 ARG A 33 0.27 SIDE CHAIN REMARK 500 11 ARG A 63 0.27 SIDE CHAIN REMARK 500 12 ARG A 4 0.32 SIDE CHAIN REMARK 500 12 ARG A 31 0.21 SIDE CHAIN REMARK 500 12 ARG A 33 0.31 SIDE CHAIN REMARK 500 12 ARG A 63 0.29 SIDE CHAIN REMARK 500 13 ARG A 4 0.24 SIDE CHAIN REMARK 500 13 ARG A 31 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 79 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5027 RELATED DB: BMRB REMARK 900 THE CHEMICAL SHIFT TABLE OF FIBRONECTIN DBREF 1J8K A 1 94 UNP P02751 FINC_HUMAN 1631 1724 SEQRES 1 A 94 ASN ILE ASP ARG PRO LYS GLY LEU ALA PHE THR ASP VAL SEQRES 2 A 94 ASP VAL ASP SER ILE LYS ILE ALA TRP GLU SER PRO GLN SEQRES 3 A 94 GLY GLN VAL SER ARG TYR ARG VAL THR TYR SER SER PRO SEQRES 4 A 94 GLU ASP GLY ILE HIS GLU LEU PHE PRO ALA PRO ASP GLY SEQRES 5 A 94 GLU GLU ASP THR ALA GLU LEU GLN GLY LEU ARG PRO GLY SEQRES 6 A 94 SER GLU TYR THR VAL SER VAL VAL ALA LEU HIS ASP ASP SEQRES 7 A 94 MET GLU SER GLN PRO LEU ILE GLY THR GLN SER THR ALA SEQRES 8 A 94 ILE PRO ALA SHEET 1 A 3 ALA A 9 ASP A 14 0 SHEET 2 A 3 SER A 17 ALA A 21 -1 N SER A 17 O ASP A 14 SHEET 3 A 3 THR A 56 LEU A 59 -1 N ALA A 57 O ILE A 20 SHEET 1 B 4 GLY A 42 LEU A 46 0 SHEET 2 B 4 TYR A 32 SER A 38 -1 O VAL A 34 N LEU A 46 SHEET 3 B 4 GLU A 67 ALA A 74 -1 O THR A 69 N SER A 37 SHEET 4 B 4 LEU A 84 SER A 89 -1 O LEU A 84 N VAL A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1